Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C025747.2 Cucumis melo HOM05D002419 ORTHO05D005441 3.0e-125 451.8 221 100.0
CsaV3_6G021640 Cucumis sativus L. HOM05D002419 ORTHO05D005441 8.4e-96 354.0 177 96.6
ClCG02G020950 Citrullus lanatus HOM05D002419 ORTHO05D005441 1.1e-95 353.6 177 97.2
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 2.1e-91 339.3 181 88.4
Ciclev10029381m.g Citrus clementina HOM05D002419 ORTHO05D005441 2.4e-82 309.3 177 79.1
Atru.chr3.3690 Acer truncatum HOM05D002419 ORTHO05D005441 4.1e-82 308.5 174 79.9
Manes.04G024900 Manihot esculenta HOM05D002419 ORTHO05D005441 1.9e-79 299.7 178 78.1
Thecc.01G220900 Theobroma cacao HOM05D002419 ORTHO05D005441 1.9e-79 299.7 178 76.4
Eucgr.J00952 Eucalyptus grandis HOM05D002419 ORTHO05D005441 4.2e-79 298.5 177 77.4
Nitab4.5_0002129g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 5.5e-79 298.1 178 77.5
Gorai.004G058900 Gossypium raimondii HOM05D002419 ORTHO05D005441 9.4e-79 297.4 176 77.3
Cpa.g.sc8.318 Carica papaya HOM05D002419 ORTHO05D005441 1.2e-78 297.0 171 78.9
QL01p037218 Quercus lobata HOM05D002419 ORTHO05D005441 1.2e-78 297.0 171 78.4
Gohir.D08G057700 Gossypium hirsutum HOM05D002419 ORTHO05D005441 1.6e-78 296.6 176 76.7
Cfa010014 Carpinus fangiana HOM05D002419 ORTHO05D005441 3.6e-78 295.4 180 75.6
Gohir.A08G047300 Gossypium hirsutum HOM05D002419 ORTHO05D005441 3.6e-78 295.4 176 76.1
Hma1.2p1_0958F.1_g241480 Hydrangea macrophylla HOM05D002419 ORTHO05D005441 3.6e-78 295.4 168 79.8
Migut.D02183 Erythranthe guttata HOM05D002419 ORTHO05D005441 1.0e-77 293.9 168 79.2
Peaxi162Scf00389g00950 Petunia axillaris HOM05D002419 ORTHO05D005441 1.0e-77 293.9 177 76.8
MSTRG.21143 Avicennia marina HOM05D002419 ORTHO05D005441 1.8e-77 293.1 175 74.9
Dinv32788 Davidia involucrata HOM05D002419 ORTHO05D005441 1.8e-77 293.1 177 74.6
Sopen11g030060 Solanum pennellii HOM05D002419 ORTHO05D005441 3.0e-77 292.4 169 76.9
Ah.13g070120 Amaranthus hybridus HOM05D002419 ORTHO05D005441 3.9e-77 292.0 166 80.1
Duzib211G0640 Durio zibethinus HOM05D002419 ORTHO05D005441 3.9e-77 292.0 178 74.7
COL.COLO4_15624 Corchorus olitorius HOM05D002419 ORTHO05D005441 5.1e-77 291.6 178 75.3
Solyc11g072410.2 Solanum lycopersicum HOM05D002419 ORTHO05D005441 5.1e-77 291.6 169 76.9
SalBow3G4510 Salvia bowleyana HOM05D002419 ORTHO05D005441 6.7e-77 291.2 167 78.4
PGSC0003DMG400027404 Solanum tuberosum HOM05D002419 ORTHO05D005441 8.8e-77 290.8 169 77.5
BcaB08g36334 Brassica carinata HOM05D002419 ORTHO05D005441 1.1e-76 290.4 169 75.1
MD10G1078500 Malus domestica HOM05D002419 ORTHO05D005441 1.1e-76 290.4 170 77.1
GSVIVG01025135001 Vitis vinifera HOM05D002419 ORTHO05D005441 1.1e-76 290.4 174 75.9
Potri.012G109400 Populus trichocarpa HOM05D002419 ORTHO05D005441 1.5e-76 290.0 182 71.4
Duzib211G0283 Durio zibethinus HOM05D002419 ORTHO05D005441 2.0e-76 289.7 178 74.7
Duzib138G1011 Durio zibethinus HOM05D002419 ORTHO05D005441 2.6e-76 289.3 171 75.4
Prupe.8G100300 Prunus persica HOM05D002419 ORTHO05D005441 2.6e-76 289.3 168 77.4
Aqoxy5G03165 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 4.3e-76 288.5 177 73.4
CANSAT54G0974 Cannabis sativa HOM05D002419 ORTHO05D005441 4.3e-76 288.5 173 76.9
Rhsim08G0250900 Rhododendron simsii HOM05D002419 ORTHO05D005441 4.3e-76 288.5 175 75.4
arahy.Tifrunner.gnm1.ann1.LS5S44 Arachis hypogaea HOM05D002419 ORTHO05D005441 5.7e-76 288.1 172 74.4
Cc04_g16270 Coffea canephora HOM05D002419 ORTHO05D005441 5.7e-76 288.1 166 77.7
Potri.006G228500 Populus trichocarpa HOM05D002419 ORTHO05D005441 5.7e-76 288.1 176 73.3
PGR119G1746 Punica granatum HOM05D002419 ORTHO05D005441 5.7e-76 288.1 172 75.6
THA.LOC104814839 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 7.4e-76 287.7 171 76.6
Os07g0412400 Oryza sativa ssp. japonica HOM05D002419 ORTHO05D005441 9.7e-76 287.3 169 75.1
TWI31G0524 Tripterygium wilfordii HOM05D002419 ORTHO05D005441 9.7e-76 287.3 179 74.9
CiPaw.13G107100 Carya illinoinensis HOM05D002419 ORTHO05D005441 1.3e-75 287.0 180 73.3
Prupe.1G205700 Prunus persica HOM05D002419 ORTHO05D005441 1.3e-75 287.0 168 75.6
arahy.Tifrunner.gnm1.ann1.0PI3PU Arachis hypogaea HOM05D002419 ORTHO05D005441 1.7e-75 286.6 172 74.4
HanXRQChr13g0401511 Helianthus annuus HOM05D002419 ORTHO05D005441 2.8e-75 285.8 171 75.4
TAR623G1637 Trochodendron aralioides HOM05D002419 ORTHO05D005441 2.8e-75 285.8 176 74.4
Sc06g0010580 Simmondsia chinensis HOM05D002419 ORTHO05D005441 3.7e-75 285.4 170 75.9
AUR62019559 Chenopodium quinoa HOM05D002419 ORTHO05D005441 4.8e-75 285.0 166 77.7
Aqoxy5G00056 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 6.3e-75 284.6 177 74.0
CSS0025233 Camellia sinensis var. sinensis HOM05D002419 ORTHO05D005441 6.3e-75 284.6 174 73.6
LjContig00564g0008442 Lotus japonicus HOM05D002419 ORTHO05D005441 6.3e-75 284.6 167 76.0
EL10Ac5g12738 Beta vulgaris HOM05D002419 ORTHO05D005441 8.2e-75 284.3 166 78.9
Zm00001eb305840 Zea mays HOM05D002419 ORTHO05D005441 8.2e-75 284.3 169 75.7
DCAR_006045 Daucus carota HOM05D002419 ORTHO05D005441 1.1e-74 283.9 176 71.6
RcHm_v2.0_Chr7g0223211 Rosa chinensis HOM05D002419 ORTHO05D005441 1.1e-74 283.9 168 75.6
PSO339G1519 Papaver somniferum HOM05D002419 ORTHO05D005441 1.4e-74 283.5 171 73.1
Haze_23372 Corylus avellana HOM05D002419 ORTHO05D005441 1.8e-74 283.1 191 70.2
Medtr5g087910 Medicago truncatula HOM05D002419 ORTHO05D005441 1.8e-74 283.1 167 75.4
FvH4_5g29720 Fragaria vesca HOM05D002419 ORTHO05D005441 2.4e-74 282.7 168 75.0
FAN18G2638 Fragaria x ananassa HOM05D002419 ORTHO05D005441 2.4e-74 282.7 168 75.0
arahy.Tifrunner.gnm1.ann1.P2RDRN Arachis hypogaea HOM05D002419 ORTHO05D005441 3.1e-74 282.3 172 73.3
Lsat_1_v5_gn_6_26220 Lactuca sativa HOM05D002419 ORTHO05D005441 3.1e-74 282.3 225 61.3
Hund28200 Selenicereus undatus HOM05D002419 ORTHO05D005441 3.1e-74 282.3 166 78.3
Hund28212 Selenicereus undatus HOM05D002419 ORTHO05D005441 3.1e-74 282.3 166 78.3
BcaC04g19694 Brassica carinata HOM05D002419 ORTHO05D005441 4.1e-74 282.0 167 74.3
Sp6g21950 Schrenkiella parvula HOM05D002419 ORTHO05D005441 4.1e-74 282.0 169 72.8
TPR.G1260 Trifolium pratense HOM05D002419 ORTHO05D005441 4.1e-74 282.0 173 74.6
BcaC02g12517 Brassica carinata HOM05D002419 ORTHO05D005441 9.1e-74 280.8 170 71.2
PSO541G3116 Papaver somniferum HOM05D002419 ORTHO05D005441 9.1e-74 280.8 171 73.7
PSO675G4527 Papaver somniferum HOM05D002419 ORTHO05D005441 9.1e-74 280.8 171 73.7
HPP92_005091 Vanilla planifolia HOM05D002419 ORTHO05D005441 2.0e-73 279.6 170 72.9
Carub.0003s2777 Capsella rubella HOM05D002419 ORTHO05D005441 2.6e-73 279.3 169 71.6
CDE02G0876 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 2.6e-73 279.3 172 72.1
THA.LOC104799485 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 2.6e-73 279.3 173 75.7
FAN13G2429 Fragaria x ananassa HOM05D002419 ORTHO05D005441 3.4e-73 278.9 168 73.8
Glyma.02G076000 Glycine max HOM05D002419 ORTHO05D005441 3.4e-73 278.9 170 71.8
Glyma.16G158000 Glycine max HOM05D002419 ORTHO05D005441 3.4e-73 278.9 170 72.9
Phvul.004G086200 Phaseolus vulgaris HOM05D002419 ORTHO05D005441 3.4e-73 278.9 170 73.5
SGA_v2.0_scaffold61G21167 Striga asiatica HOM05D002419 ORTHO05D005441 4.5e-73 278.5 168 75.6
ECA233G1138 Erigeron canadensis HOM05D002419 ORTHO05D005441 7.7e-73 277.7 171 73.1
Thhalv10014819m.g Eutrema salsugineum HOM05D002419 ORTHO05D005441 1.0e-72 277.3 169 72.2
Oeu037230.1 Olea europaea HOM05D002419 ORTHO05D005441 1.0e-72 277.3 164 78.7
Lalb_Chr10g0105941 Lupinus albus HOM05D002419 ORTHO05D005441 1.7e-72 276.6 167 71.9
FAN04G1346 Fragaria x ananassa HOM05D002419 ORTHO05D005441 2.2e-72 276.2 168 73.2
TPR.G11323 Trifolium pratense HOM05D002419 ORTHO05D005441 2.2e-72 276.2 173 72.8
VMungo0245G0001 Vigna mungo HOM05D002419 ORTHO05D005441 2.2e-72 276.2 170 72.9
BcaB01g04654 Brassica carinata HOM05D002419 ORTHO05D005441 2.9e-72 275.8 169 72.2
BolC4t26562H Brassica oleracea HOM05D002419 ORTHO05D005441 5.0e-72 275.0 169 71.0
Lj1g0007529 Lotus japonicus HOM05D002419 ORTHO05D005441 6.5e-72 274.6 170 72.9
C09p52960 Brassica napus HOM05D002419 ORTHO05D005441 1.1e-71 273.9 169 72.8
BolC9t58170H Brassica oleracea HOM05D002419 ORTHO05D005441 1.1e-71 273.9 169 72.8
Ca_11594_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 1.1e-71 273.9 184 66.8
CDE06G2731 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 1.4e-71 273.5 166 73.5
ATR0564G250 Amborella trichopoda HOM05D002419 ORTHO05D005441 2.5e-71 272.7 170 71.8
AL8G36960 Arabidopsis lyrata HOM05D002419 ORTHO05D005441 2.5e-71 272.7 169 71.0
A03p11170 Brassica napus HOM05D002419 ORTHO05D005441 2.5e-71 272.7 169 71.6
BraA03t10433Z Brassica rapa HOM05D002419 ORTHO05D005441 2.5e-71 272.7 169 71.6
Ca_01433_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 2.5e-71 272.7 167 73.1
Rhsim01G0220200 Rhododendron simsii HOM05D002419 ORTHO05D005441 2.5e-71 272.7 201 64.7
A10p17550 Brassica napus HOM05D002419 ORTHO05D005441 3.2e-71 272.3 161 75.8
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 9.4e-71 270.8 216 62.0
BraA10t43836Z Brassica rapa HOM05D002419 ORTHO05D005441 9.4e-71 270.8 161 75.2
Psat2g022600 Pisum sativum HOM05D002419 ORTHO05D005441 1.2e-70 270.4 164 74.4
VMungo1080G0265 Vigna mungo HOM05D002419 ORTHO05D005441 1.6e-70 270.0 170 70.6
C03p12900 Brassica napus HOM05D002419 ORTHO05D005441 2.1e-70 269.6 169 70.4
CARHR274010 Cardamine hirsuta HOM05D002419 ORTHO05D005441 3.6e-70 268.9 169 71.6
MBI18_g31602_MAGBIO Magnolia biondii HOM05D002419 ORTHO05D005441 3.6e-70 268.9 171 69.6
SEGI_39229 Sequoiadendron giganteum HOM05D002419 ORTHO05D005441 4.7e-70 268.5 176 69.3
BcaC08g46529 Brassica carinata HOM05D002419 ORTHO05D005441 6.1e-70 268.1 169 69.8
BolC3t13754H Brassica oleracea HOM05D002419 ORTHO05D005441 6.1e-70 268.1 167 70.7
AUR62037871 Chenopodium quinoa HOM05D002419 ORTHO05D005441 6.1e-70 268.1 152 80.9
FAN08G2817 Fragaria x ananassa HOM05D002419 ORTHO05D005441 7.9e-70 267.7 162 74.1
CAN.G1839.8 Capsicum annuum HOM05D002419 ORTHO05D005441 3.0e-69 265.8 171 69.6
Oeu005909.2 Olea europaea HOM05D002419 ORTHO05D005441 8.8e-69 264.2 158 79.1
Nitab4.5_0000106g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 2.6e-68 262.7 176 68.2
AT5G60340 Arabidopsis thaliana HOM05D002419 ORTHO05D005441 1.3e-67 260.4 169 67.5
vmacro14463 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 1.4e-66 256.9 236 55.1
Pp3c13_9300 Physcomitrium patens HOM05D002419 ORTHO05D005441 2.4e-66 256.1 174 64.4
Aa31LG1G12400 Aethionema arabicum HOM05D002419 ORTHO05D005441 2.6e-65 252.7 151 77.5
Peaxi162Scf00101g01011 Petunia axillaris HOM05D002419 ORTHO05D005441 3.5e-65 252.3 175 65.1
PGSC0003DMG400007496 Solanum tuberosum HOM05D002419 ORTHO05D005441 2.5e-63 246.1 182 63.7
AagrBONN_evm.TU.Sc2ySwM_344.3388 Anthoceros agrestis HOM05D002419 ORTHO05D005441 1.2e-62 243.8 164 66.5
TAR369G1020 Trochodendron aralioides HOM05D002419 ORTHO05D005441 3.0e-61 239.2 179 65.4
Sopen06g031710 Solanum pennellii HOM05D002419 ORTHO05D005441 3.3e-60 235.7 168 63.1
CBR_g24285 Chara braunii HOM05D002419 ORTHO05D005441 5.7e-60 235.0 173 62.4
SMO367G1131 Selaginella moellendorffii HOM05D002419 ORTHO05D005441 2.2e-59 233.0 167 62.3
Mapoly0012s0053 Marchantia polymorpha HOM05D002419 ORTHO05D005441 8.2e-59 231.1 165 63.0
Haze_23913 Corylus avellana HOM05D002419 ORTHO05D005441 1.2e-57 227.3 168 63.1
SHI24546 Sapria himalayana HOM05D002419 ORTHO05D005441 1.6e-54 216.9 173 57.8
Cre02.g081550 Chlamydomonas reinhardtii HOM05D002419 ORTHO05D005441 5.2e-53 211.8 169 56.2
PRCOL_00000283 Prasinoderma coloniale HOM05D002419 ORTHO05D005441 6.8e-53 211.5 172 53.5
Nn1g08940 Nelumbo nucifera HOM05D002419 ORTHO05D005441 1.7e-48 196.8 113 79.6
Nitab4.5_0001802g0070 Nicotiana tabacum HOM05D006502 ORTHO05D007704 2.3e-45 186.4 114 71.9
Aqoxy6G01924 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 5.2e-45 185.3 115 74.8
Glyma.10G187200 Glycine max HOM05D002419 ORTHO05D005441 5.7e-44 181.8 122 67.2
MCO01G137 Micromonas commoda HOM05D002419 ORTHO05D005441 1.4e-42 177.2 171 48.0
CAN.G553.11 Capsicum annuum HOM05D002419 ORTHO05D005441 9.2e-42 174.5 104 75.0
Nn5g28456 Nelumbo nucifera HOM05D002419 ORTHO05D005441 6.6e-40 168.3 111 69.4
unitig_736.g22419 Utricularia gibba HOM05D002419 ORTHO05D005441 8.6e-40 167.9 167 51.5
Dinv24670 Davidia involucrata HOM05D002419 ORTHO05D005441 1.5e-39 167.2 104 73.1
CAN.G6400.1 Capsicum annuum HOM05D002419 ORTHO05D005441 1.9e-39 166.8 103 72.8
Solyc06g075310.4 Solanum lycopersicum HOM05D002419 ORTHO05D005441 2.8e-38 162.9 108 68.5
CAN.G1001.14 Capsicum annuum HOM05D002419 ORTHO05D005441 8.0e-38 161.4 109 66.1
CAN.G1001.18 Capsicum annuum HOM05D002419 ORTHO05D005441 8.0e-38 161.4 109 66.1
AagrBONN_evm.TU.Sc2ySwM_228.4581 Anthoceros agrestis HOM05D002419 ORTHO05D005441 1.2e-36 157.5 103 68.9
Aa31LG4G12680 Aethionema arabicum HOM05D002419 ORTHO05D005441 1.3e-35 154.1 85 83.5
QL08p054546 Quercus lobata HOM05D002419 ORTHO05D005441 1.7e-35 153.7 171 48.5
CAN.G352.38 Capsicum annuum HOM05D002419 ORTHO05D005441 7.0e-34 148.3 170 48.8
arahy.Tifrunner.gnm1.ann1.VN8392 Arachis hypogaea HOM05D002419 ORTHO05D005441 2.9e-27 126.3 73 74.0
Peaxi162Scf00101g00114 Petunia axillaris HOM05D002419 ORTHO05D005441 5.4e-26 122.1 123 53.7
Haze_26704 Corylus avellana HOM05D002419 ORTHO05D164840 2.0e-25 120.2 165 37.0
arahy.Tifrunner.gnm1.ann1.9EY0GB Arachis hypogaea HOM05D002419 ORTHO05D005441 3.9e-24 115.9 137 48.9
HPP92_005089 Vanilla planifolia HOM05D002419 ORTHO05D005441 1.4e-18 97.4 63 69.8
Cfa024491 Carpinus fangiana HOM05D002419 ORTHO05D126234 1.9e-18 97.1 180 30.0
vmacro14073 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 6.0e-17 92.0 63 60.3
SHI24547 Sapria himalayana HOM05D002419 ORTHO05D005441 9.5e-15 84.7 79 50.6
PGSC0003DMG400008253 Solanum tuberosum HOM05D002419 ORTHO05D030681 2.1e-14 83.6 60 58.3
PGSC0003DMG400035128 Solanum tuberosum HOM05D002419 ORTHO05D030681 4.0e-13 79.3 67 55.2
PGSC0003DMG400039134 Solanum tuberosum HOM05D002419 ORTHO05D030681 7.6e-12 75.1 61 59.0
Actinidia21172 Actinidia chinensis HOM05D002419 ORTHO05D055483 7.1e-10 68.6 35 85.7
vmacro14074 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 6.0e-09 65.5 62 61.3


User provided reference genes

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