Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C025746.2 Cucumis melo HOM05D002419 ORTHO05D008128 1.4e-78 296.2 148 100.0
CsaV3_6G021630 Cucumis sativus L. HOM05D002419 ORTHO05D008128 5.2e-41 171.4 90 93.3
ClCG02G020940 Citrullus lanatus HOM05D002419 ORTHO05D008128 2.0e-32 142.9 80 86.2
Cfa011364 Carpinus fangiana HOM05D005177 ORTHO05D006175 2.8e-26 122.5 128 52.3
Haze_23915 Corylus avellana HOM05D002419 ORTHO05D008128 2.3e-25 119.4 90 65.6
Ca_06160_v3 Cicer arietinum L. HOM05D002419 ORTHO05D008128 3.1e-25 119.0 91 65.9
CiPaw.13G107000 Carya illinoinensis HOM05D002419 ORTHO05D008128 5.2e-25 118.2 76 72.4
QL01p037215 Quercus lobata HOM05D002419 ORTHO05D008128 1.5e-24 116.7 90 66.7
Duzib170G1173 Durio zibethinus HOM05D002419 ORTHO05D008128 2.0e-24 116.3 94 62.8
Aa31LG1G12400 Aethionema arabicum HOM05D002419 ORTHO05D005441 5.8e-24 114.8 90 57.8
BolC3t13754H Brassica oleracea HOM05D002419 ORTHO05D005441 4.9e-23 111.7 119 52.9
Prupe.6G094800 Prunus persica HOM05D002419 ORTHO05D008128 6.4e-23 111.3 90 63.3
A03p11220 Brassica napus HOM05D002419 ORTHO05D008128 1.4e-22 110.2 75 66.7
Lalb_Chr25g0283021 Lupinus albus HOM05D002419 ORTHO05D008128 1.4e-22 110.2 92 64.1
Psat2g021880 Pisum sativum HOM05D002419 ORTHO05D008128 1.9e-22 109.8 93 63.4
TWI75G1733 Tripterygium wilfordii HOM05D002419 ORTHO05D008128 1.9e-22 109.8 90 58.9
A10p17550 Brassica napus HOM05D002419 ORTHO05D005441 3.2e-22 109.0 120 53.3
BolC9t58170H Brassica oleracea HOM05D002419 ORTHO05D005441 3.2e-22 109.0 122 50.8
Glyma.14G041000 Glycine max HOM05D002419 ORTHO05D008128 3.2e-22 109.0 91 61.5
Medtr5g087960 Medicago truncatula HOM05D002419 ORTHO05D008128 3.2e-22 109.0 92 63.0
MD11G1129900 Malus domestica HOM05D002419 ORTHO05D008128 4.1e-22 108.6 90 61.1
TPR.G11328 Trifolium pratense HOM05D002419 ORTHO05D008128 4.1e-22 108.6 92 62.0
Carub.0008s2104 Capsella rubella HOM05D002419 ORTHO05D008128 5.4e-22 108.2 91 60.4
CARHR274000 Cardamine hirsuta HOM05D002419 ORTHO05D008128 5.4e-22 108.2 90 60.0
C09p52960 Brassica napus HOM05D002419 ORTHO05D005441 9.2e-22 107.5 122 50.0
BraA10t43836Z Brassica rapa HOM05D002419 ORTHO05D005441 1.2e-21 107.1 122 48.4
Thhalv10014838m.g Eutrema salsugineum HOM05D002419 ORTHO05D008128 1.2e-21 107.1 90 58.9
RcHm_v2.0_Chr5g0060661 Rosa chinensis HOM05D002419 ORTHO05D008128 1.2e-21 107.1 77 68.8
BcaC04g19693 Brassica carinata HOM05D002419 ORTHO05D008128 1.6e-21 106.7 75 68.0
Cpa.g.sc139.69 Carica papaya HOM05D002419 ORTHO05D008128 1.6e-21 106.7 79 68.4
LjContig00564g0025850 Lotus japonicus HOM05D002419 ORTHO05D008128 1.6e-21 106.7 92 62.0
TPR.G11332 Trifolium pratense HOM05D002419 ORTHO05D008128 1.6e-21 106.7 92 60.9
BcaB08g36333 Brassica carinata HOM05D002419 ORTHO05D008128 2.1e-21 106.3 75 66.7
FvH4_3g33270 Fragaria vesca HOM05D002273 ORTHO05D008128 2.1e-21 106.3 90 61.1
FAN11G3570 Fragaria x ananassa HOM05D002273 ORTHO05D008128 2.1e-21 106.3 90 61.1
Psat2g022480 Pisum sativum HOM05D002419 ORTHO05D008128 6.0e-21 104.8 78 66.7
arahy.Tifrunner.gnm1.ann1.AUHN72 Arachis hypogaea HOM05D002419 ORTHO05D008128 7.8e-21 104.4 87 60.9
BcaB01g04653 Brassica carinata HOM05D002419 ORTHO05D008128 7.8e-21 104.4 90 57.8
BraA03t10435Z Brassica rapa HOM05D002419 ORTHO05D008128 7.8e-21 104.4 75 65.3
FAN25G2109 Fragaria x ananassa HOM05D002419 ORTHO05D008128 7.8e-21 104.4 90 60.0
Glyma.02G275000 Glycine max HOM05D002419 ORTHO05D008128 1.3e-20 103.6 77 63.6
FAN21G3525 Fragaria x ananassa HOM05D002419 ORTHO05D008128 1.7e-20 103.2 90 60.0
FAN16G1578 Fragaria x ananassa HOM05D002419 ORTHO05D008128 2.3e-20 102.8 90 60.0
Gorai.001G129900 Gossypium raimondii HOM05D002419 ORTHO05D008128 3.9e-20 102.1 79 65.8
Potri.006G133800 Populus trichocarpa HOM05D002419 ORTHO05D008128 3.9e-20 102.1 97 58.8
Sopen06g031430 Solanum pennellii HOM05D002419 ORTHO05D008128 3.9e-20 102.1 91 56.0
COL.COLO4_25247 Corchorus olitorius HOM05D002419 ORTHO05D008128 8.6e-20 100.9 95 52.6
Eucgr.B02468 Eucalyptus grandis HOM05D002419 ORTHO05D008128 1.5e-19 100.1 81 55.6
Solyc06g075000.3 Solanum lycopersicum HOM05D002419 ORTHO05D008128 1.5e-19 100.1 91 54.9
TAR636G3373 Trochodendron aralioides HOM05D002419 ORTHO05D008128 1.5e-19 100.1 90 54.4
AT5G60335 Arabidopsis thaliana HOM05D002419 ORTHO05D008128 1.9e-19 99.8 77 61.0
Gohir.A07G116300 Gossypium hirsutum HOM05D002419 ORTHO05D008128 1.9e-19 99.8 72 66.7
Gohir.D07G120700 Gossypium hirsutum HOM05D002419 ORTHO05D008128 1.9e-19 99.8 79 64.6
THA.LOC104814842 Tarenaya hassleriana HOM05D002419 ORTHO05D008128 1.9e-19 99.8 90 55.6
Dinv29347 Davidia involucrata HOM05D002419 ORTHO05D008128 2.5e-19 99.4 90 57.8
CANSAT54G1052 Cannabis sativa HOM05D002419 ORTHO05D008128 3.3e-19 99.0 90 54.4
COL.COLO4_32908 Corchorus olitorius HOM05D002419 ORTHO05D008128 3.3e-19 99.0 84 57.1
Manes.11G141200 Manihot esculenta HOM05D002419 ORTHO05D008128 4.3e-19 98.6 90 53.3
Hund27375 Selenicereus undatus HOM05D002419 ORTHO05D008128 4.3e-19 98.6 91 56.0
ATR0680G185 Amborella trichopoda HOM05D002419 ORTHO05D008128 5.6e-19 98.2 66 65.2
AL8G36950 Arabidopsis lyrata HOM05D002419 ORTHO05D008128 5.6e-19 98.2 91 56.0
MSTRG.17782 Avicennia marina HOM05D002419 ORTHO05D008128 5.6e-19 98.2 84 57.1
PGSC0003DMG400012002 Solanum tuberosum HOM05D002419 ORTHO05D008128 5.6e-19 98.2 91 54.9
Thecc.09G260200 Theobroma cacao HOM05D002419 ORTHO05D008128 7.3e-19 97.8 72 63.9
TAR636G2038 Trochodendron aralioides HOM05D002419 ORTHO05D008128 7.3e-19 97.8 90 53.3
Atru.chr3.3691 Acer truncatum HOM05D002419 ORTHO05D008128 9.5e-19 97.4 97 51.5
Actinidia03711 Actinidia chinensis HOM05D002419 ORTHO05D008128 9.5e-19 97.4 91 56.0
arahy.Tifrunner.gnm1.ann1.2RF374 Arachis hypogaea HOM05D002419 ORTHO05D008128 9.5e-19 97.4 72 61.1
CSS0035547 Camellia sinensis var. sinensis HOM05D002419 ORTHO05D008128 1.6e-18 96.7 90 55.6
EL10Ac8g19852 Beta vulgaris HOM05D002419 ORTHO05D008128 2.8e-18 95.9 90 55.6
AUR62027574 Chenopodium quinoa HOM05D002419 ORTHO05D008128 2.8e-18 95.9 94 56.4
PSO801G0184 Papaver somniferum HOM05D002419 ORTHO05D008128 2.8e-18 95.9 90 53.3
Ah.01g024490 Amaranthus hybridus HOM05D002419 ORTHO05D008128 3.6e-18 95.5 90 54.4
Sabra06G0105100 Salix brachista HOM05D002419 ORTHO05D008128 3.6e-18 95.5 98 55.1
SalBow7G0817 Salvia bowleyana HOM05D002419 ORTHO05D008128 4.7e-18 95.1 87 55.2
Sp6g21940 Schrenkiella parvula HOM05D002419 ORTHO05D008128 4.7e-18 95.1 75 58.7
Aqoxy6G01314 Aquilegia oxysepala HOM05D002419 ORTHO05D008128 6.2e-18 94.7 72 56.9
PSO339G2915 Papaver somniferum HOM05D002419 ORTHO05D008128 6.2e-18 94.7 90 52.2
GSVIVG01025134001 Vitis vinifera HOM05D002419 ORTHO05D008128 8.1e-18 94.4 91 57.1
Nitab4.5_0000106g0340 Nicotiana tabacum HOM05D002419 ORTHO05D008128 1.1e-17 94.0 91 53.8
PGR102G0399 Punica granatum HOM05D002419 ORTHO05D008128 1.4e-17 93.6 77 61.0
Lj2A1017T34 Lonicera japonica HOM05D002419 ORTHO05D008128 2.3e-17 92.8 90 54.4
Phvul.008G206400 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 2.3e-17 92.8 96 53.1
Sabra03G0090700 Salix brachista HOM05D002419 ORTHO05D008128 2.3e-17 92.8 97 56.7
Sc15g0001550 Simmondsia chinensis HOM05D002419 ORTHO05D008128 2.3e-17 92.8 90 53.3
TAR633G0359 Trochodendron aralioides HOM05D002419 ORTHO05D008128 2.3e-17 92.8 90 52.2
Lj2A891T18 Lonicera japonica HOM05D002419 ORTHO05D008128 3.1e-17 92.4 90 54.4
CAN.G2109.1 Capsicum annuum HOM05D002419 ORTHO05D008128 6.8e-17 91.3 90 51.1
vmacro14413 Vaccinium macrocarpon HOM05D002419 ORTHO05D008128 8.9e-17 90.9 92 57.6
Aqoxy2G01471 Aquilegia oxysepala HOM05D002419 ORTHO05D008128 1.2e-16 90.5 73 52.1
Phvul.008G172000 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 2.0e-16 89.7 96 51.0
DCAR_006043 Daucus carota HOM05D002419 ORTHO05D008128 3.4e-16 89.0 72 61.1
VMungo0647G2488 Vigna mungo HOM05D002419 ORTHO05D008128 3.4e-16 89.0 92 52.2
Cc01_g10710 Coffea canephora HOM05D002419 ORTHO05D008128 7.5e-16 87.8 83 55.4
ECA248G1487 Erigeron canadensis HOM05D002419 ORTHO05D008128 7.5e-16 87.8 70 55.7
HanXRQChr01g0019131 Helianthus annuus HOM05D002419 ORTHO05D008128 9.9e-16 87.4 70 55.7
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 9.9e-16 87.4 85 52.9
Migut.N02582 Erythranthe guttata HOM05D002419 ORTHO05D008128 1.3e-15 87.0 80 55.0
Oeu049265.1 Olea europaea HOM05D002419 ORTHO05D008128 1.3e-15 87.0 77 53.2
CDE09G0261 Ceratophyllum demersum HOM05D007330 ORTHO05D008128 1.7e-15 86.7 88 48.9
Rhsim01G0213400 Rhododendron simsii HOM05D002419 ORTHO05D008128 3.7e-15 85.5 94 48.9
SHI33804 Sapria himalayana HOM05D002419 ORTHO05D008128 4.9e-15 85.1 75 52.0
Oeu009377.1 Olea europaea HOM05D002419 ORTHO05D008128 6.4e-15 84.7 78 50.0
Rhsim01G0213200 Rhododendron simsii HOM05D002419 ORTHO05D008128 8.3e-15 84.3 91 51.6
MBI04_g27072_MAGBIO Magnolia biondii HOM05D002419 ORTHO05D008128 1.9e-14 83.2 85 49.4
Peaxi162Scf00029g01714 Petunia axillaris HOM05D002419 ORTHO05D008128 1.9e-14 83.2 90 48.9
Lsat_1_v5_gn_1_63680 Lactuca sativa HOM05D002419 ORTHO05D008128 2.4e-14 82.8 71 53.5
MD11G1130200 Malus domestica HOM05D005177 ORTHO05D008128 3.5e-13 79.0 100 46.0
SGA_v2.0_scaffold25G11093 Striga asiatica HOM05D002419 ORTHO05D008128 7.8e-13 77.8 77 46.8
Sed0027804 Sechium edule HOM05D002419 ORTHO05D008128 1.0e-12 77.4 45 93.3
Oeu049264.1 Olea europaea HOM05D002419 ORTHO05D008128 3.0e-12 75.9 65 55.4
SEGI_36576 Sequoiadendron giganteum HOM05D002419 ORTHO05D008128 6.6e-12 74.7 73 50.7
CBR_g17117 Chara braunii HOM05D002419 ORTHO05D008128 4.7e-10 68.6 65 41.5
Zm00001eb211510 Zea mays HOM05D002419 ORTHO05D008128 1.4e-09 67.0 94 40.4
Zm00001eb088630 Zea mays HOM05D002419 ORTHO05D008128 1.2e-08 63.9 97 43.3
SMO356G0194 Selaginella moellendorffii HOM05D002419 ORTHO05D008128 1.5e-08 63.5 72 43.1
HPP92_005092 Vanilla planifolia HOM05D002419 ORTHO05D008128 2.0e-08 63.2 87 39.1
AagrBONN_evm.TU.Sc2ySwM_228.5888 Anthoceros agrestis HOM05D002419 ORTHO05D008128 7.6e-08 61.2 85 38.8
MCO16G180 Micromonas commoda HOM05D002419 ORTHO05D008128 7.6e-08 61.2 66 42.4
Nitab4.5_0000511g0130 Nicotiana tabacum HOM05D002419 ORTHO05D008128 7.6e-08 61.2 42 59.5
Mapoly0013s0067 Marchantia polymorpha HOM05D002419 ORTHO05D008128 1.7e-07 60.1 72 38.9
AagrBONN_evm.TU.Sc2ySwM_228.5883 Anthoceros agrestis HOM05D002419 ORTHO05D008128 2.2e-07 59.7 78 39.7
Phvul.008G171900 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 3.8e-07 58.9 74 48.6
Pp3c27_1710 Physcomitrium patens HOM05D002419 ORTHO05D008128 3.8e-07 58.9 67 40.3
AUR62035785 Chenopodium quinoa HOM05D002419 ORTHO05D008128 4.9e-07 58.5 37 70.3


User provided reference genes

Program Settings