Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C025719.2 Cucumis melo HOM05D021867 ORTHO05D008438 6.7e-103 377.5 208 100.0
CsaV3_6G021930 Cucumis sativus L. HOM05D021867 ORTHO05D008438 1.5e-86 323.2 210 88.1
ClCG02G020690 Citrullus lanatus HOM05D021867 ORTHO05D008438 1.4e-76 290.0 213 80.3
MELO3C025717.2 Cucumis melo HOM05D021867 ORTHO05D008438 4.6e-43 178.7 114 86.8
Sed0003904 Sechium edule HOM05D007431 ORTHO05D008438 2.4e-28 129.8 206 48.5
Sed0014169 Sechium edule HOM05D007431 ORTHO05D008438 1.0e-18 97.8 189 45.5
Sed0011387 Sechium edule HOM05D007431 ORTHO05D008438 1.5e-17 94.0 71 73.2
TAR623G0663 Trochodendron aralioides HOM05D007431 ORTHO05D008438 4.5e-14 82.4 91 56.0
Aa31LG4G15040 Aethionema arabicum HOM05D007431 ORTHO05D008438 1.3e-13 80.9 102 53.9
Glyma.17G228900 Glycine max HOM05D007431 ORTHO05D008438 6.4e-13 78.6 96 52.1
CANSAT11G1515 Cannabis sativa HOM05D007431 ORTHO05D008438 1.1e-12 77.8 79 54.4
Cpa.g.sc139.17 Carica papaya HOM05D007431 ORTHO05D008438 2.4e-12 76.6 199 38.2
Prupe.6G089500 Prunus persica HOM05D016629 ORTHO05D008438 5.4e-12 75.5 75 57.3
Thecc.03G012200 Theobroma cacao HOM05D007431 ORTHO05D008438 5.4e-12 75.5 78 59.0
Sc12g0001910 Simmondsia chinensis HOM05D007431 ORTHO05D008438 1.6e-11 73.9 129 41.9
Gohir.A03G036200 Gossypium hirsutum HOM05D007431 ORTHO05D008438 2.1e-11 73.6 189 36.5
arahy.Tifrunner.gnm1.ann1.C9XA4X Arachis hypogaea HOM05D007431 ORTHO05D008438 2.7e-11 73.2 146 39.7
Nn2g12944 Nelumbo nucifera HOM05D007431 ORTHO05D008438 2.7e-11 73.2 206 35.9
TAR369G0100 Trochodendron aralioides HOM05D007431 ORTHO05D008438 2.7e-11 73.2 59 67.8
AL8G36620 Arabidopsis lyrata HOM05D007431 ORTHO05D008438 3.5e-11 72.8 60 65.0
AT5G60030 Arabidopsis thaliana HOM05D007431 ORTHO05D008438 3.5e-11 72.8 60 66.7
Lj1P179T36 Lonicera japonica HOM05D007431 ORTHO05D008438 4.6e-11 72.4 66 65.2
BcaB05g22609 Brassica carinata HOM05D007431 ORTHO05D008438 6.0e-11 72.0 61 63.9
CSS0032205 Camellia sinensis var. sinensis HOM05D007431 ORTHO05D008438 6.0e-11 72.0 95 46.3
Dinv06340 Davidia involucrata HOM05D007431 ORTHO05D008438 6.0e-11 72.0 165 39.4
CiPaw.14G074700 Carya illinoinensis HOM05D023024 ORTHO05D008438 7.9e-11 71.6 215 37.7
Duzib168G1071 Durio zibethinus HOM05D007431 ORTHO05D008438 7.9e-11 71.6 78 56.4
Hma1.2p1_0321F.1_g124110 Hydrangea macrophylla HOM05D007431 ORTHO05D008438 7.9e-11 71.6 72 62.5
AT1G75335 Arabidopsis thaliana HOM05D007431 ORTHO05D008438 1.0e-10 71.2 60 65.0
Gohir.D03G132100 Gossypium hirsutum HOM05D007431 ORTHO05D008438 1.3e-10 70.9 189 36.0
Thecc.09G259600 Theobroma cacao HOM05D007431 ORTHO05D008438 1.3e-10 70.9 143 41.3
Carub.0002s2217 Capsella rubella HOM05D007431 ORTHO05D008438 2.3e-10 70.1 81 51.9
Gorai.003G139000 Gossypium raimondii HOM05D007431 ORTHO05D008438 2.3e-10 70.1 189 36.0
Cfa011407 Carpinus fangiana HOM05D023024 ORTHO05D008438 3.0e-10 69.7 190 35.8
Eucgr.B01149 Eucalyptus grandis HOM05D007431 ORTHO05D008438 3.0e-10 69.7 208 34.1
MD11G1119300 Malus domestica HOM05D016629 ORTHO05D008438 5.1e-10 68.9 182 36.8
Hma1.2p1_0321F.1_g124100 Hydrangea macrophylla HOM05D007431 ORTHO05D008438 6.7e-10 68.6 116 44.8
Lalb_Chr22g0356011 Lupinus albus HOM05D007431 ORTHO05D008438 8.7e-10 68.2 207 35.3
AUR62034380 Chenopodium quinoa HOM05D007431 ORTHO05D008438 1.5e-09 67.4 235 35.7
A02p06640 Brassica napus HOM05D007431 ORTHO05D008438 1.9e-09 67.0 67 55.2
C02p11930 Brassica napus HOM05D007431 ORTHO05D008438 1.9e-09 67.0 67 55.2
BolC2t07290H Brassica oleracea HOM05D007431 ORTHO05D008438 1.9e-09 67.0 67 55.2
BraA02t05746Z Brassica rapa HOM05D007431 ORTHO05D008438 1.9e-09 67.0 67 55.2
THA.LOC104810823 Tarenaya hassleriana HOM05D007431 ORTHO05D008438 1.9e-09 67.0 164 34.8
Actinidia00802 Actinidia chinensis HOM05D007431 ORTHO05D008438 2.5e-09 66.6 66 59.1
AUR62022321 Chenopodium quinoa HOM05D007431 ORTHO05D008438 2.5e-09 66.6 234 35.9
COL.COLO4_18404 Corchorus olitorius HOM05D007431 ORTHO05D008438 2.5e-09 66.6 216 35.6
DCAR_003389 Daucus carota HOM05D007431 ORTHO05D008438 2.5e-09 66.6 116 41.4
Lalb_Chr24g0399681 Lupinus albus HOM05D007431 ORTHO05D008438 2.5e-09 66.6 208 33.7
Potri.019G095600 Populus trichocarpa HOM05D007431 ORTHO05D008438 2.5e-09 66.6 144 39.6
Carub.0008s2073 Capsella rubella HOM05D007431 ORTHO05D008438 3.3e-09 66.2 107 43.9
BolC3t13774H Brassica oleracea HOM05D007431 ORTHO05D008438 4.3e-09 65.9 61 59.0
Atru.chr3.3765 Acer truncatum HOM05D007431 ORTHO05D008438 5.6e-09 65.5 140 39.3
Glyma.14G094600 Glycine max HOM05D007431 ORTHO05D008438 5.6e-09 65.5 224 31.7
HanXRQChr14g0439961 Helianthus annuus HOM05D007431 ORTHO05D008438 5.6e-09 65.5 102 44.1
THA.LOC104799471 Tarenaya hassleriana HOM05D007431 ORTHO05D008438 1.3e-08 64.3 208 33.2
Ciclev10028956m.g Citrus clementina HOM05D007431 ORTHO05D008438 1.6e-08 63.9 209 34.4
Haze_02139 Corylus avellana HOM05D023024 ORTHO05D008438 1.6e-08 63.9 204 33.3
Nn2g10588 Nelumbo nucifera HOM05D007431 ORTHO05D008438 2.1e-08 63.5 60 61.7
DCAR_011227 Daucus carota HOM05D007431 ORTHO05D008438 2.8e-08 63.2 114 40.4
DCAR_011228 Daucus carota HOM05D007431 ORTHO05D008438 2.8e-08 63.2 114 40.4
Potri.013G126701 Populus trichocarpa HOM05D007431 ORTHO05D008438 2.8e-08 63.2 67 56.7
Sabra13G0105800 Salix brachista HOM05D007431 ORTHO05D008438 2.8e-08 63.2 67 56.7
Sp6g21690 Schrenkiella parvula HOM05D007431 ORTHO05D008438 2.8e-08 63.2 112 41.1
C03p13110 Brassica napus HOM05D007431 ORTHO05D008438 3.7e-08 62.8 61 57.4
QL01p035383 Quercus lobata HOM05D007431 ORTHO05D008438 3.7e-08 62.8 136 38.2
MBI15_g23248_MAGBIO Magnolia biondii HOM05D007431 ORTHO05D008438 6.2e-08 62.0 64 59.4
Aqoxy4G03128 Aquilegia oxysepala HOM05D007431 ORTHO05D008438 1.1e-07 61.2 165 37.0
RhsimUnG0043300 Rhododendron simsii HOM05D002794 ORTHO05D008438 1.1e-07 61.2 67 49.3
EL10Ac7g15930 Beta vulgaris HOM05D008034 ORTHO05D010051 1.4e-07 60.8 185 35.7
CARHR068680 Cardamine hirsuta HOM05D007431 ORTHO05D008438 1.4e-07 60.8 60 55.0
Manes.07G083300 Manihot esculenta HOM05D007431 ORTHO05D008438 1.4e-07 60.8 55 60.0
THA.LOC104814853 Tarenaya hassleriana HOM05D007431 ORTHO05D008438 1.4e-07 60.8 205 32.7
Ca_13166_v3 Cicer arietinum L. HOM05D007431 ORTHO05D008438 1.8e-07 60.5 256 32.4
MBI18_g47623_MAGBIO Magnolia biondii HOM05D007431 ORTHO05D008438 2.4e-07 60.1 64 57.8
PSO339G3784 Papaver somniferum HOM05D007431 ORTHO05D008438 2.4e-07 60.1 66 51.5
Phvul.001G035400 Phaseolus vulgaris HOM05D007431 ORTHO05D008438 2.4e-07 60.1 173 34.1
A03p11360 Brassica napus HOM05D007431 ORTHO05D008438 3.1e-07 59.7 98 43.9
Haze_23978 Corylus avellana HOM05D023024 ORTHO05D008438 4.0e-07 59.3 203 31.0
Lsat_1_v5_gn_2_80021 Lactuca sativa HOM05D007431 ORTHO05D008438 4.0e-07 59.3 101 41.6
VMungo0647G2370 Vigna mungo HOM05D007431 ORTHO05D008438 4.0e-07 59.3 170 34.1
Psat6g020440 Pisum sativum HOM05D007431 ORTHO05D008438 5.3e-07 58.9 216 32.4
BraA03t10450Z Brassica rapa HOM05D007431 ORTHO05D008438 9.0e-07 58.2 110 41.8
Lj3g0021288 Lotus japonicus HOM05D002777 ORTHO05D001516 9.0e-07 58.2 60 56.7
Nitab4.5_0002380g0010 Nicotiana tabacum HOM05D015294 ORTHO05D018867 2.0e-06 57.0 109 33.9
MD03G1106700 Malus domestica HOM05D016629 ORTHO05D008438 5.8e-06 55.5 146 34.9
Lsat_1_v5_gn_8_91980 Lactuca sativa HOM05D007431 ORTHO05D008438 7.6e-06 55.1 113 35.4
Lj5g0005730 Lotus japonicus HOM05D007431 ORTHO05D008438 7.6e-06 55.1 214 33.2
MBI15_g23247_MAGBIO Magnolia biondii HOM05D007431 ORTHO05D008438 7.6e-06 55.1 137 36.5
Ca_16682_v3 Cicer arietinum L. HOM05D000974 ORTHO05D007456 9.9e-06 54.7 50 58.0
Medtr1g016270 Medicago truncatula HOM05D007431 ORTHO05D008438 9.9e-06 54.7 236 31.4
PSO384G2622 Papaver somniferum HOM05D007431 ORTHO05D008438 9.9e-06 54.7 110 40.0


User provided reference genes

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