Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C025672.2 Cucumis melo HOM05D003581 ORTHO05D004332 2.7e-61 238.4 114 100.0
MELO3C026654.2 Cucumis melo HOM05D003581 ORTHO05D004332 3.6e-34 148.3 75 90.7
MELO3C017762.2 Cucumis melo HOM05D003581 ORTHO05D004332 1.2e-32 143.3 79 87.3
CsaV3_4G002790 Cucumis sativus L. HOM05D003581 ORTHO05D004332 1.2e-32 143.3 79 87.3
FAN21G2715 Fragaria x ananassa HOM05D003581 ORTHO05D004332 1.6e-29 132.9 84 73.8
Sed0001548 Sechium edule HOM05D003581 ORTHO05D004332 4.6e-29 131.3 79 79.7
Oeu015721.1 Olea europaea HOM05D003581 ORTHO05D004332 6.0e-29 131.0 101 63.4
TWI15G0618 Tripterygium wilfordii HOM05D003581 ORTHO05D004332 6.0e-29 131.0 79 74.7
FAN16G1590 Fragaria x ananassa HOM05D003581 ORTHO05D004332 1.3e-28 129.8 79 77.2
THA.LOC104817844 Tarenaya hassleriana HOM05D003581 ORTHO05D004332 1.7e-28 129.4 86 70.9
Thecc.04G165500 Theobroma cacao HOM05D003581 ORTHO05D004332 1.7e-28 129.4 79 74.7
Manes.11G129000 Manihot esculenta HOM05D003581 ORTHO05D004332 2.3e-28 129.0 79 72.2
Medtr4g087320 Medicago truncatula HOM05D003581 ORTHO05D004332 3.0e-28 128.6 79 75.9
Aqoxy2G04153 Aquilegia oxysepala HOM05D003581 ORTHO05D004332 3.9e-28 128.3 79 73.4
Dinv07056 Davidia involucrata HOM05D003581 ORTHO05D004332 3.9e-28 128.3 79 74.7
Potri.013G127000 Populus trichocarpa HOM05D003581 ORTHO05D004332 3.9e-28 128.3 79 75.9
Actinidia11443 Actinidia chinensis HOM05D003581 ORTHO05D004332 5.1e-28 127.9 80 72.5
BcaB02g07454 Brassica carinata HOM05D003581 ORTHO05D004332 5.1e-28 127.9 79 73.4
COL.COLO4_06497 Corchorus olitorius HOM05D003581 ORTHO05D004332 6.6e-28 127.5 79 74.7
TWI63G1729 Tripterygium wilfordii HOM05D003581 ORTHO05D004332 6.6e-28 127.5 79 73.4
arahy.Tifrunner.gnm1.ann1.CYNM9M Arachis hypogaea HOM05D003581 ORTHO05D004332 8.6e-28 127.1 79 75.9
arahy.Tifrunner.gnm1.ann1.S0PZLW Arachis hypogaea HOM05D003581 ORTHO05D004332 8.6e-28 127.1 79 75.9
BcaC08g44999 Brassica carinata HOM05D003581 ORTHO05D004332 8.6e-28 127.1 79 74.7
C06p26310 Brassica napus HOM05D003581 ORTHO05D004332 8.6e-28 127.1 79 74.7
BolC6t37794H Brassica oleracea HOM05D003581 ORTHO05D004332 8.6e-28 127.1 79 74.7
Sabra13G0106000 Salix brachista HOM05D003581 ORTHO05D004332 8.6e-28 127.1 79 74.7
MSTRG.9734 Avicennia marina HOM05D003581 ORTHO05D004332 1.1e-27 126.7 79 73.4
FvH4_3g33330 Fragaria vesca HOM05D003581 ORTHO05D004332 1.1e-27 126.7 79 75.9
FAN11G3774 Fragaria x ananassa HOM05D003581 ORTHO05D004332 1.1e-27 126.7 79 75.9
FAN21G3444 Fragaria x ananassa HOM05D003581 ORTHO05D004332 1.1e-27 126.7 79 75.9
FAN25G3295 Fragaria x ananassa HOM05D003581 ORTHO05D004332 1.1e-27 126.7 79 75.9
Solyc08g014150.4 Solanum lycopersicum HOM05D003581 ORTHO05D004332 1.1e-27 126.7 79 73.4
Sopen08g005080 Solanum pennellii HOM05D003581 ORTHO05D004332 1.1e-27 126.7 79 73.4
AL5G41730 Arabidopsis lyrata HOM05D003581 ORTHO05D004332 1.5e-27 126.3 79 72.2
AT3G59660 Arabidopsis thaliana HOM05D003581 ORTHO05D004332 1.5e-27 126.3 79 72.2
Carub.0005s2638 Capsella rubella HOM05D003581 ORTHO05D004332 1.5e-27 126.3 79 72.2
CARHR170030 Cardamine hirsuta HOM05D003581 ORTHO05D004332 1.5e-27 126.3 79 72.2
Ciclev10019423m.g Citrus clementina HOM05D003581 ORTHO05D004332 1.5e-27 126.3 79 72.2
Ciclev10019432m.g Citrus clementina HOM05D003581 ORTHO05D004332 1.5e-27 126.3 79 70.9
Ciclev10019435m.g Citrus clementina HOM05D003581 ORTHO05D004332 1.5e-27 126.3 79 72.2
Thhalv10005851m.g Eutrema salsugineum HOM05D003581 ORTHO05D004332 1.5e-27 126.3 79 72.2
Nitab4.5_0001586g0020 Nicotiana tabacum HOM05D003581 ORTHO05D004332 1.5e-27 126.3 84 66.7
RcHm_v2.0_Chr5g0060731 Rosa chinensis HOM05D003581 ORTHO05D004332 1.5e-27 126.3 79 75.9
Sp5g03520 Schrenkiella parvula HOM05D003581 ORTHO05D004332 1.5e-27 126.3 79 72.2
MELO3C031715.2 Cucumis melo HOM05D003581 ORTHO05D004332 1.9e-27 125.9 64 90.6
Hma1.2p1_0108F.1_g051730 Hydrangea macrophylla HOM05D003581 ORTHO05D004332 1.9e-27 125.9 99 65.7
Aa31LG10G13950 Aethionema arabicum HOM05D003581 ORTHO05D004332 2.5e-27 125.6 79 70.9
BcaC07g40497 Brassica carinata HOM05D003581 ORTHO05D004332 2.5e-27 125.6 79 72.2
A09p51980 Brassica napus HOM05D003581 ORTHO05D004332 2.5e-27 125.6 79 72.2
C08p34660 Brassica napus HOM05D003581 ORTHO05D004332 2.5e-27 125.6 79 72.2
BolC8t51068H Brassica oleracea HOM05D003581 ORTHO05D004332 2.5e-27 125.6 79 72.2
BraA09t40631Z Brassica rapa HOM05D003581 ORTHO05D004332 2.5e-27 125.6 79 72.2
Duzib151G0128 Durio zibethinus HOM05D003581 ORTHO05D004332 2.5e-27 125.6 79 73.4
Migut.G01176 Erythranthe guttata HOM05D003581 ORTHO05D004332 2.5e-27 125.6 79 70.9
Sed0016715 Sechium edule HOM05D003581 ORTHO05D004332 2.5e-27 125.6 79 75.9
A07p24730 Brassica napus HOM05D003581 ORTHO05D004332 3.3e-27 125.2 79 72.2
BraA07t30118Z Brassica rapa HOM05D003581 ORTHO05D004332 3.3e-27 125.2 79 72.2
Eucgr.L00003 Eucalyptus grandis HOM05D003581 ORTHO05D004332 3.3e-27 125.2 79 72.2
Lalb_Chr05g0218901 Lupinus albus HOM05D003581 ORTHO05D004332 3.3e-27 125.2 79 74.7
Duzib212G0814 Durio zibethinus HOM05D003581 ORTHO05D004332 4.3e-27 124.8 79 73.4
Lj4g0012121 Lotus japonicus HOM05D003581 ORTHO05D004332 4.3e-27 124.8 79 74.7
SalBow3G1683 Salvia bowleyana HOM05D003581 ORTHO05D004332 4.3e-27 124.8 79 69.6
CAN.G759.9 Capsicum annuum HOM05D003581 ORTHO05D004332 5.6e-27 124.4 79 72.2
Ca_18637_v3 Cicer arietinum L. HOM05D003581 ORTHO05D004332 5.6e-27 124.4 79 72.2
Dinv33206 Davidia involucrata HOM05D003581 ORTHO05D004332 5.6e-27 124.4 79 73.4
Nitab4.5_0024222g0010 Nicotiana tabacum HOM05D003581 ORTHO05D004332 5.6e-27 124.4 79 68.4
Peaxi162Scf00568g00013 Petunia axillaris HOM05D003581 ORTHO05D004332 7.3e-27 124.0 79 70.9
Prupe.1G207300 Prunus persica HOM05D003581 ORTHO05D004332 7.3e-27 124.0 79 72.2
Sc19g0002230 Simmondsia chinensis HOM05D003581 ORTHO05D004332 7.3e-27 124.0 80 73.8
TPR.G23544 Trifolium pratense HOM05D003581 ORTHO05D004332 7.3e-27 124.0 79 73.4
Gohir.A02G009800 Gossypium hirsutum HOM05D003581 ORTHO05D004332 9.6e-27 123.6 79 73.4
Gohir.D02G010000 Gossypium hirsutum HOM05D003581 ORTHO05D004332 9.6e-27 123.6 79 73.4
Gorai.005G012300 Gossypium raimondii HOM05D003581 ORTHO05D004332 9.6e-27 123.6 79 73.4
MSTRG.4302 Avicennia marina HOM05D003581 ORTHO05D004332 1.2e-26 123.2 99 60.6
Duzib268G0130 Durio zibethinus HOM05D003581 ORTHO05D004332 1.2e-26 123.2 79 73.4
Glyma.07G207700 Glycine max HOM05D003581 ORTHO05D004332 1.2e-26 123.2 79 73.4
PSO017G3340 Papaver somniferum HOM05D003581 ORTHO05D004332 1.2e-26 123.2 79 72.2
PSO837G0047 Papaver somniferum HOM05D003581 ORTHO05D004332 1.2e-26 123.2 79 72.2
PGR042G0246 Punica granatum HOM05D003581 ORTHO05D004332 1.2e-26 123.2 79 72.2
Atru.chr4.1420 Acer truncatum HOM05D003581 ORTHO05D004332 1.6e-26 122.9 79 73.4
Cfa015269 Carpinus fangiana HOM05D003581 ORTHO05D004332 1.6e-26 122.9 79 72.2
Haze_01360 Corylus avellana HOM05D003581 ORTHO05D004332 1.6e-26 122.9 79 72.2
MD00G1149500 Malus domestica HOM05D003581 ORTHO05D004332 1.6e-26 122.9 79 72.2
DCAR_027523 Daucus carota HOM05D003581 ORTHO05D004332 2.1e-26 122.5 79 70.9
Glyma.02G137700 Glycine max HOM05D003581 ORTHO05D004332 2.1e-26 122.5 79 73.4
Gohir.A10G143900 Gossypium hirsutum HOM05D003581 ORTHO05D004332 2.1e-26 122.5 79 69.6
Gohir.D10G123100 Gossypium hirsutum HOM05D003581 ORTHO05D004332 2.1e-26 122.5 79 69.6
Gorai.011G135600 Gossypium raimondii HOM05D003581 ORTHO05D004332 2.1e-26 122.5 79 69.6
Nitab4.5_0000013g0560 Nicotiana tabacum HOM05D003581 ORTHO05D004332 2.1e-26 122.5 79 70.9
Nitab4.5_0001411g0030 Nicotiana tabacum HOM05D003581 ORTHO05D004332 2.1e-26 122.5 79 70.9
Oeu050335.1 Olea europaea HOM05D003581 ORTHO05D004332 2.1e-26 122.5 83 66.3
Sopen06g018480 Solanum pennellii HOM05D003581 ORTHO05D004332 2.1e-26 122.5 79 67.1
CiPaw.02G100300 Carya illinoinensis HOM05D003581 ORTHO05D004332 2.8e-26 122.1 79 70.9
Hma1.2p1_0150F.1_g066840 Hydrangea macrophylla HOM05D003581 ORTHO05D004332 2.8e-26 122.1 79 73.4
SGA_v2.0_scaffold283G46956 Striga asiatica HOM05D003581 ORTHO05D004332 2.8e-26 122.1 79 68.4
Oeu016612.2 Olea europaea HOM05D003581 ORTHO05D004332 3.6e-26 121.7 79 70.9
GSVIVG01038144001 Vitis vinifera HOM05D003581 ORTHO05D004332 3.6e-26 121.7 79 70.9
QL10p055884 Quercus lobata HOM05D003581 ORTHO05D004332 4.7e-26 121.3 79 70.9
TAR362G0335 Trochodendron aralioides HOM05D003581 ORTHO05D004332 4.7e-26 121.3 79 70.9
MBI11_g16039_MAGBIO Magnolia biondii HOM05D003581 ORTHO05D004332 6.2e-26 120.9 105 59.0
Cc03_g14130 Coffea canephora HOM05D003581 ORTHO05D004332 8.1e-26 120.6 79 67.1
Phvul.003G296800 Phaseolus vulgaris HOM05D003581 ORTHO05D004332 8.1e-26 120.6 79 72.2
HPP92_012802 Vanilla planifolia HOM05D003581 ORTHO05D004332 8.1e-26 120.6 79 68.4
HanXRQChr02g0059151 Helianthus annuus HOM05D003581 ORTHO05D004332 1.4e-25 119.8 79 67.1
Psat7g120160 Pisum sativum HOM05D003581 ORTHO05D004332 1.4e-25 119.8 79 72.2
VMungo0251G3355 Vigna mungo HOM05D003581 ORTHO05D004332 1.4e-25 119.8 79 72.2
Actinidia02585 Actinidia chinensis HOM05D003581 ORTHO05D004332 1.8e-25 119.4 103 56.3
CSS0022611 Camellia sinensis var. sinensis HOM05D003581 ORTHO05D004332 1.8e-25 119.4 79 68.4
CAN.G136.12 Capsicum annuum HOM05D003581 ORTHO05D004332 1.8e-25 119.4 79 65.8
Nn7g37551 Nelumbo nucifera HOM05D003581 ORTHO05D004332 1.8e-25 119.4 79 68.4
Os09g0516900 Oryza sativa ssp. japonica HOM05D003581 ORTHO05D004332 1.8e-25 119.4 79 69.6
Rhsim02G0084300 Rhododendron simsii HOM05D003581 ORTHO05D004332 1.8e-25 119.4 99 59.6
ClCG07G015200 Citrullus lanatus HOM05D003581 ORTHO05D004332 2.4e-25 119.0 86 70.9
Solyc06g053420.4 Solanum lycopersicum HOM05D003581 ORTHO05D004332 2.4e-25 119.0 79 65.8
MSTRG.22033 Avicennia marina HOM05D003581 ORTHO05D004332 3.1e-25 118.6 79 68.4
Peaxi162Scf00180g00011 Petunia axillaris HOM05D003581 ORTHO05D004332 4.0e-25 118.2 79 64.6
CDE02G2835 Ceratophyllum demersum HOM05D003581 ORTHO05D004332 5.2e-25 117.9 79 67.1
Lalb_Chr16g0384431 Lupinus albus HOM05D003581 ORTHO05D004332 5.2e-25 117.9 79 69.6
Lsat_1_v5_gn_1_74961 Lactuca sativa HOM05D003581 ORTHO05D004332 6.9e-25 117.5 79 67.1
Lj6A212G5 Lonicera japonica HOM05D003581 ORTHO05D004332 6.9e-25 117.5 79 69.6
Lsat_1_v5_gn_6_65760 Lactuca sativa HOM05D003581 ORTHO05D004332 8.9e-25 117.1 79 67.1
Peaxi162Scf00075g01320 Petunia axillaris HOM05D003581 ORTHO05D004332 8.9e-25 117.1 79 68.4
Lju470A15G16 Lonicera japonica HOM05D003581 ORTHO05D004332 1.5e-24 116.3 79 68.4
ECA248G0552 Erigeron canadensis HOM05D003581 ORTHO05D004332 2.6e-24 115.5 79 64.6
Zm00001eb102830 Zea mays HOM05D003581 ORTHO05D004332 9.9e-24 113.6 79 68.4
unitig_747.g21694 Utricularia gibba HOM05D003581 ORTHO05D004332 1.3e-23 113.2 91 61.5
AUR62002403 Chenopodium quinoa HOM05D003581 ORTHO05D004332 1.7e-23 112.8 94 60.6
AUR62023792 Chenopodium quinoa HOM05D003581 ORTHO05D004332 1.7e-23 112.8 94 60.6
ATR0743G267 Amborella trichopoda HOM05D003581 ORTHO05D004332 1.1e-22 110.2 79 64.6
Zm00001eb318620 Zea mays HOM05D003581 ORTHO05D004332 1.1e-22 110.2 79 65.8
Ah.13g073460 Amaranthus hybridus HOM05D003581 ORTHO05D004332 1.4e-22 109.8 79 64.6
EL10Ac3g06090 Beta vulgaris HOM05D003581 ORTHO05D004332 1.4e-22 109.8 79 64.6
Hund03203 Selenicereus undatus HOM05D003581 ORTHO05D004332 2.4e-22 109.0 84 63.1
HanXRQChr11g0343141 Helianthus annuus HOM05D003581 ORTHO05D004332 5.4e-22 107.8 79 62.0
Rhsim09G0009900 Rhododendron simsii HOM05D003581 ORTHO05D004332 7.1e-22 107.5 88 59.1
SalBow6G2049 Salvia bowleyana HOM05D003581 ORTHO05D004332 1.2e-21 106.7 79 60.8
HanXRQChr08g0224081 Helianthus annuus HOM05D003581 ORTHO05D004332 6.0e-21 104.4 89 55.1
Mapoly0029s0087 Marchantia polymorpha HOM05D003581 ORTHO05D004332 2.3e-20 102.4 79 59.5
SEGI_00445 Sequoiadendron giganteum HOM05D003581 ORTHO05D004332 1.1e-19 100.1 79 57.0
AagrBONN_evm.TU.Sc2ySwM_228.999 Anthoceros agrestis HOM05D003581 ORTHO05D004332 4.8e-18 94.7 78 56.4
Zm00001eb246670 Zea mays HOM05D003581 ORTHO05D004332 3.1e-17 92.0 79 51.9
CBR_g46857 Chara braunii HOM05D003581 ORTHO05D004332 4.0e-17 91.7 88 50.0
Glyma.02G137500 Glycine max HOM05D003581 ORTHO05D004332 3.4e-16 88.6 82 56.1
Migut.N03065 Erythranthe guttata HOM05D003581 ORTHO05D004332 4.5e-16 88.2 85 49.4
HanXRQChr15g0474821 Helianthus annuus HOM05D003581 ORTHO05D004332 5.8e-16 87.8 113 41.6
Pp3c15_5890 Physcomitrium patens HOM05D003581 ORTHO05D004332 8.4e-15 84.0 79 46.8
DCAR_005472 Daucus carota HOM05D003581 ORTHO05D004332 2.1e-13 79.3 51 68.6
arahy.Tifrunner.gnm1.ann1.QCV2L4 Arachis hypogaea HOM05D003581 ORTHO05D004332 3.9e-12 75.1 73 52.1
Cpa.g.sc9.367 Carica papaya HOM05D003581 ORTHO05D004332 6.7e-12 74.3 44 77.3
VMungo0251G0270 Vigna mungo HOM05D003581 ORTHO05D004332 1.1e-11 73.6 102 40.2
Glyma.07G207902 Glycine max HOM05D003581 ORTHO05D004332 4.3e-11 71.6 80 48.8
Phvul.003G296600 Phaseolus vulgaris HOM05D003581 ORTHO05D004332 2.8e-10 68.9 79 48.1
CiPaw.01G170400 Carya illinoinensis HOM05D003581 ORTHO05D004332 3.6e-10 68.6 43 72.1
SMO358G0294 Selaginella moellendorffii HOM05D003581 ORTHO05D004332 1.4e-09 66.6 94 39.4
vmacro00696 Vaccinium macrocarpon HOM05D003581 ORTHO05D004332 1.5e-08 63.2 49 59.2
Cpa.g.sc9.366 Carica papaya HOM05D003581 ORTHO05D004332 9.9e-08 60.5 36 72.2
arahy.Tifrunner.gnm1.ann1.KL9X3Y Arachis hypogaea HOM05D003581 ORTHO05D004332 2.2e-07 59.3 64 43.8
Lj6A223G7 Lonicera japonica HOM05D003581 ORTHO05D004332 7.1e-06 54.3 79 43.0


User provided reference genes

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