Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C025660.2 Cucumis melo HOM05D004150 ORTHO05D005087 4.6e-288 993.8 480 100.0
CsaV3_4G032910 Cucumis sativus L. HOM05D004150 ORTHO05D005087 8.1e-269 929.9 486 94.9
ClCG11G017260 Citrullus lanatus HOM05D004150 ORTHO05D005087 3.2e-257 891.3 555 81.1
Sed0003063 Sechium edule HOM05D004150 ORTHO05D005087 2.5e-225 785.4 447 86.8
Cfa019528 Carpinus fangiana HOM05D004150 ORTHO05D005087 1.2e-208 729.9 484 72.7
Hma1.2p1_2701F.1_g327060 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 4.8e-205 718.0 484 70.2
CANSAT56G2087 Cannabis sativa HOM05D004150 ORTHO05D005087 1.4e-204 716.5 486 71.6
GSVIVG01014152001 Vitis vinifera HOM05D004150 ORTHO05D005087 3.1e-204 715.3 484 71.5
CiPaw.11G157600 Carya illinoinensis HOM05D004150 ORTHO05D005087 7.0e-204 714.1 484 71.3
Glyma.13G266400 Glycine max HOM05D004150 ORTHO05D005087 1.1e-201 706.8 487 71.0
MD03G1246300 Malus domestica HOM05D004150 ORTHO05D005087 1.2e-200 703.4 486 70.0
CSS0001873 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 1.6e-200 703.0 486 69.8
VMungo1080G1533 Vigna mungo HOM05D004150 ORTHO05D005087 1.8e-199 699.5 491 69.9
Manes.03G091700 Manihot esculenta HOM05D004150 ORTHO05D005087 6.8e-199 697.6 488 69.7
Glyma.12G231700 Glycine max HOM05D004150 ORTHO05D005087 2.6e-198 695.7 489 70.8
Lj1A826G61 Lonicera japonica HOM05D004150 ORTHO05D005087 4.4e-198 694.9 489 68.9
Potri.003G026500 Populus trichocarpa HOM05D004150 ORTHO05D005087 1.3e-197 693.3 488 69.3
Thecc.07G119700 Theobroma cacao HOM05D004150 ORTHO05D005087 1.3e-197 693.3 484 70.9
Phvul.005G079200 Phaseolus vulgaris HOM05D004150 ORTHO05D005087 8.3e-197 690.6 491 69.7
PGR083G0816 Punica granatum HOM05D004150 ORTHO05D005087 8.3e-197 690.6 488 68.4
CSS0042666 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 1.1e-196 690.3 486 69.5
RcHm_v2.0_Chr5g0030011 Rosa chinensis HOM05D004150 ORTHO05D005087 1.1e-196 690.3 485 69.7
Manes.15G097400 Manihot esculenta HOM05D004150 ORTHO05D005087 7.0e-196 687.6 487 69.6
Potri.011G106600 Populus trichocarpa HOM05D004150 ORTHO05D005087 2.0e-195 686.0 490 68.8
COL.COLO4_17523 Corchorus olitorius HOM05D004150 ORTHO05D005087 1.0e-194 683.7 484 69.8
TWI38G0344 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 1.7e-194 682.9 488 69.1
Eucgr.F01300 Eucalyptus grandis HOM05D004150 ORTHO05D005087 2.9e-194 682.2 490 68.8
Cc05_g10890 Coffea canephora HOM05D004150 ORTHO05D005087 1.6e-192 676.4 484 67.4
MD11G1267300 Malus domestica HOM05D004150 ORTHO05D005087 3.6e-192 675.2 486 67.5
Atru.chr2.2029 Acer truncatum HOM05D004150 ORTHO05D005087 1.0e-191 673.7 488 69.3
Gorai.002G053300 Gossypium raimondii HOM05D004150 ORTHO05D005087 3.0e-191 672.2 485 69.3
Gohir.A01G052900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 4.0e-191 671.8 484 69.0
FvH4_3g17970 Fragaria vesca HOM05D004150 ORTHO05D005087 5.2e-191 671.4 494 67.6
Atru.chr2.2041 Acer truncatum HOM05D004150 ORTHO05D005087 8.8e-191 670.6 488 69.1
FAN21G0088 Fragaria x ananassa HOM05D004150 ORTHO05D005087 8.8e-191 670.6 493 67.5
Sabra16G0254300 Salix brachista HOM05D004150 ORTHO05D005087 8.8e-191 670.6 527 63.9
TWI39G0561 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 8.8e-191 670.6 487 66.9
Gohir.A13G149900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.5e-190 669.8 484 69.2
Gohir.D01G042500 Gossypium hirsutum HOM05D004150 ORTHO05D005087 3.4e-190 668.7 485 69.1
FAN11G2611 Fragaria x ananassa HOM05D004150 ORTHO05D005087 4.4e-190 668.3 507 66.1
MBI06_g16571_MAGBIO Magnolia biondii HOM05D004150 ORTHO05D005087 9.8e-190 667.2 484 66.1
Psat5g234480 Pisum sativum HOM05D004150 ORTHO05D005087 1.8e-188 662.9 488 67.4
Ca_03941_v3 Cicer arietinum L. HOM05D004150 ORTHO05D005087 1.6e-187 659.8 489 66.5
Nn6g34456 Nelumbo nucifera HOM05D004150 ORTHO05D005087 4.5e-187 658.3 484 65.5
Sc03g0010640 Simmondsia chinensis HOM05D004150 ORTHO05D005087 1.7e-186 656.4 489 65.2
Medtr2g075340 Medicago truncatula HOM05D004150 ORTHO05D005087 1.1e-185 653.7 484 66.1
FAN25G1025 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.9e-185 652.9 532 63.3
Lalb_Chr25g0285681 Lupinus albus HOM05D004150 ORTHO05D005087 1.9e-185 652.9 486 66.9
THA.LOC104815577 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 1.9e-185 652.9 486 66.7
Oeu058459.1 Olea europaea HOM05D004150 ORTHO05D005087 3.6e-184 648.7 485 64.5
MSTRG.14976 Avicennia marina HOM05D004150 ORTHO05D005087 4.7e-184 648.3 485 65.8
EL10Ac4g08396 Beta vulgaris HOM05D004150 ORTHO05D005087 8.0e-184 647.5 487 64.7
Lsat_1_v5_gn_9_100501 Lactuca sativa HOM05D004150 ORTHO05D005087 1.0e-183 647.1 491 65.6
Ciclev10019972m.g Citrus clementina HOM05D004150 ORTHO05D005087 3.0e-183 645.6 492 66.9
FAN16G0401 Fragaria x ananassa HOM05D004150 ORTHO05D005087 3.0e-183 645.6 530 62.5
Lj3g0004524 Lotus japonicus HOM05D004150 ORTHO05D005087 8.9e-183 644.0 492 66.7
Oeu010027.3 Olea europaea HOM05D004150 ORTHO05D005087 8.9e-183 644.0 508 62.4
Peaxi162Scf00111g01477 Petunia axillaris HOM05D004150 ORTHO05D005087 1.2e-182 643.7 522 60.5
Lalb_Chr19g0133751 Lupinus albus HOM05D004150 ORTHO05D005087 1.3e-181 640.2 488 66.2
THA.LOC104810428 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 1.4e-180 636.7 486 64.8
CAN.G375.32 Capsicum annuum HOM05D004150 ORTHO05D005087 4.1e-180 635.2 529 59.7
Aqoxy1G01964 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 9.2e-180 634.0 484 62.6
PGSC0003DMG400007094 Solanum tuberosum HOM05D004150 ORTHO05D005087 9.2e-180 634.0 527 60.0
Nitab4.5_0000347g0180 Nicotiana tabacum HOM05D004150 ORTHO05D005087 1.0e-178 630.6 527 59.4
Sopen07g030520 Solanum pennellii HOM05D004150 ORTHO05D005087 5.0e-178 628.2 527 59.2
Solyc07g062250.3 Solanum lycopersicum HOM05D004150 ORTHO05D005087 6.6e-178 627.9 527 59.4
Actinidia21439 Actinidia chinensis HOM05D004150 ORTHO05D005087 9.5e-177 624.0 486 64.2
TAR629G2423 Trochodendron aralioides HOM05D004150 ORTHO05D005087 1.2e-176 623.6 446 67.7
Rhsim04G0036400 Rhododendron simsii HOM05D004150 ORTHO05D005087 4.7e-176 621.7 493 62.1
Rhsim04G0035400 Rhododendron simsii HOM05D004150 ORTHO05D005087 4.0e-175 618.6 493 61.9
PSO170G1443 Papaver somniferum HOM05D004150 ORTHO05D005087 1.2e-174 617.1 492 62.4
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 2.6e-174 615.9 482 63.1
Gohir.D13G154200 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.2e-173 612.8 445 68.5
HanXRQChr10g0305531 Helianthus annuus HOM05D004150 ORTHO05D005087 3.7e-173 612.1 492 62.0
Lalb_Chr03g0031251 Lupinus albus HOM05D004150 ORTHO05D005087 8.3e-173 610.9 487 63.7
PSO782G0021 Papaver somniferum HOM05D004150 ORTHO05D005087 1.4e-172 610.1 492 62.0
vmacro09408 Vaccinium macrocarpon HOM05D004150 ORTHO05D005087 1.9e-172 609.8 491 62.1
SGA_v2.0_scaffold130G34274 Striga asiatica HOM05D004150 ORTHO05D005087 2.4e-172 609.4 510 59.6
AL3G27140 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 4.1e-172 608.6 490 62.9
AT3G14830 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 7.0e-172 607.8 491 62.7
Gorai.013G174200 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.6e-171 606.7 485 63.7
Aa31LG8G2040 Aethionema arabicum HOM05D004150 ORTHO05D005087 3.5e-171 605.5 487 62.8
TPR.G13030 Trifolium pratense HOM05D004150 ORTHO05D005087 1.0e-170 604.0 491 62.9
AUR62019617 Chenopodium quinoa HOM05D004150 ORTHO05D005087 5.0e-170 601.7 484 62.8
Actinidia12595 Actinidia chinensis HOM05D004150 ORTHO05D005087 1.1e-169 600.5 551 56.1
AUR62039606 Chenopodium quinoa HOM05D004150 ORTHO05D005087 1.1e-169 600.5 484 62.6
Dinv15009 Davidia involucrata HOM05D004150 ORTHO05D005087 3.3e-169 599.0 399 72.4
SalBow7G0391 Salvia bowleyana HOM05D004150 ORTHO05D005087 5.6e-169 598.2 479 63.0
HanXRQChr17g0556791 Helianthus annuus HOM05D004150 ORTHO05D005087 7.3e-169 597.8 485 61.4
Thhalv10011465m.g Eutrema salsugineum HOM05D004150 ORTHO05D005087 1.7e-165 586.6 485 60.6
Sp1g39990 Schrenkiella parvula HOM05D004150 ORTHO05D005087 3.7e-165 585.5 484 60.7
CARHR089770 Cardamine hirsuta HOM05D004150 ORTHO05D005087 6.4e-165 584.7 492 61.8
Migut.H02018 Erythranthe guttata HOM05D004150 ORTHO05D005087 1.1e-164 583.9 450 64.2
CARHR043670 Cardamine hirsuta HOM05D004150 ORTHO05D005087 1.9e-164 583.2 486 61.5
ECA234G0958 Erigeron canadensis HOM05D004150 ORTHO05D005087 7.1e-164 581.3 492 58.9
Carub.0003s1449 Capsella rubella HOM05D004150 ORTHO05D005087 1.6e-163 580.1 493 60.6
ATR0127G006 Amborella trichopoda HOM05D004150 ORTHO05D005087 1.0e-162 577.4 496 58.7
AT1G53450 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 1.3e-162 577.0 485 59.8
Carub.0001s4264 Capsella rubella HOM05D004150 ORTHO05D005087 3.9e-162 575.5 484 60.5
Prupe.4G158300 Prunus persica HOM05D004150 ORTHO05D005087 8.6e-162 574.3 416 68.8
BolC5t33929H Brassica oleracea HOM05D004150 ORTHO05D005087 1.9e-161 573.2 492 60.4
C05p52450 Brassica napus HOM05D004150 ORTHO05D005087 3.3e-161 572.4 492 60.8
BcaC05g29034 Brassica carinata HOM05D004150 ORTHO05D005087 9.5e-161 570.9 492 60.6
BcaB06g25355 Brassica carinata HOM05D004150 ORTHO05D005087 4.0e-159 565.5 486 60.5
BraA05t22282Z Brassica rapa HOM05D004150 ORTHO05D005087 6.8e-159 564.7 486 60.7
TAR627G0919 Trochodendron aralioides HOM05D004150 ORTHO05D005087 6.8e-159 564.7 400 68.8
A05p34660 Brassica napus HOM05D004150 ORTHO05D005087 1.7e-157 560.1 487 60.4
Potri.001G386700 Populus trichocarpa HOM05D004150 ORTHO05D005087 2.9e-157 559.3 403 68.7
Dinv18386 Davidia involucrata HOM05D004150 ORTHO05D005087 4.9e-157 558.5 399 68.4
BraA06t23329Z Brassica rapa HOM05D004150 ORTHO05D005087 8.3e-157 557.8 489 58.7
A06p01010 Brassica napus HOM05D004150 ORTHO05D005087 2.4e-156 556.2 489 58.5
BcaC08g43529 Brassica carinata HOM05D004150 ORTHO05D005087 6.0e-155 551.6 489 57.7
BolC6t35999H Brassica oleracea HOM05D004150 ORTHO05D005087 6.0e-155 551.6 489 57.7
BcaB07g33329 Brassica carinata HOM05D004150 ORTHO05D005087 1.1e-153 547.4 485 56.7
C06p09220 Brassica napus HOM05D004150 ORTHO05D005087 2.1e-152 543.1 488 56.8
Duzib213G1096 Durio zibethinus HOM05D004150 ORTHO05D005087 3.8e-149 532.3 441 62.6
Sabra11G0094900 Salix brachista HOM05D004150 ORTHO05D005087 8.1e-144 514.6 448 60.3
Os01g0729900 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 3.2e-140 502.7 503 51.3
Zm00001eb154220 Zea mays HOM05D004150 ORTHO05D005087 4.2e-140 502.3 507 51.9
Hund10457 Selenicereus undatus HOM05D004150 ORTHO05D005087 9.3e-140 501.1 442 57.2
CiPaw.12G111300 Carya illinoinensis HOM05D004150 ORTHO05D005087 1.6e-139 500.4 358 70.1
CDE06G0863 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 2.7e-139 499.6 470 54.5
Nn3g21055 Nelumbo nucifera HOM05D004150 ORTHO05D005087 1.3e-138 497.3 404 62.4
Os05g0530300 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 3.0e-138 496.1 517 50.7
QL08p025853 Quercus lobata HOM05D004150 ORTHO05D005087 1.5e-137 493.8 301 78.1
ECA240G3777 Erigeron canadensis HOM05D004150 ORTHO05D005087 9.0e-135 484.6 408 60.0
HPP92_005189 Vanilla planifolia HOM05D004150 ORTHO05D005087 5.6e-129 465.3 406 56.7
Zm00001eb361900 Zea mays HOM05D004150 ORTHO05D005087 9.6e-129 464.5 473 51.8
Cpa.g.sc77.46 Carica papaya HOM05D004150 ORTHO05D005087 3.2e-124 449.5 293 71.3
Nitab4.5_0024430g0010 Nicotiana tabacum HOM05D004150 ORTHO05D005087 3.3e-121 439.5 297 68.4
unitig_21.g20061 Utricularia gibba HOM05D004150 ORTHO05D005087 4.8e-120 435.6 488 48.8
AL1G61960 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 3.1e-119 433.0 333 61.6
DCAR_013267 Daucus carota HOM05D004150 ORTHO05D005087 1.3e-109 401.0 312 60.3
AagrBONN_evm.TU.Sc2ySwM_362.2802 Anthoceros agrestis HOM05D004150 ORTHO05D005087 7.2e-108 395.2 539 41.6
SMO169G0186 Selaginella moellendorffii HOM05D004150 ORTHO05D005087 2.5e-105 386.7 297 60.3
CDE02G2021 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 9.7e-105 384.8 294 63.9
Mapoly0001s0101 Marchantia polymorpha HOM05D004150 ORTHO05D005087 6.9e-103 378.6 568 39.6
Os06g0152800 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 9.4e-100 368.2 304 57.2
Hma1.2p1_1650F.1_g295710 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 3.1e-95 353.2 297 60.6
Pp3c9_8060 Physcomitrium patens HOM05D004150 ORTHO05D005087 1.0e-93 348.2 546 37.5
Zm00001eb271010 Zea mays HOM05D004150 ORTHO05D005087 1.0e-90 338.2 312 54.2
SEGI_28417 Sequoiadendron giganteum HOM05D004150 ORTHO05D005087 1.4e-90 337.8 488 38.7
Zm00001eb293260 Zea mays HOM05D004150 ORTHO05D005087 5.5e-84 315.8 373 47.2
Haze_09266 Corylus avellana HOM05D004150 ORTHO05D005087 4.0e-66 256.5 187 66.8
Mapoly0030s0045 Marchantia polymorpha HOM05D004150 ORTHO05D005087 4.6e-62 243.0 443 37.2
Haze_09270 Corylus avellana HOM05D004150 ORTHO05D005087 2.3e-61 240.7 209 57.4
Gohir.A02G079101 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.9e-47 194.5 139 69.8
QL08p025867 Quercus lobata HOM05D004150 ORTHO05D005087 9.2e-47 192.2 193 56.5
Gorai.010G164000 Gossypium raimondii HOM05D004150 ORTHO05D005087 6.2e-43 179.5 181 54.7
AL1G62010 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 4.4e-41 173.3 161 60.2
EL10Ac9g22809 Beta vulgaris HOM05D004150 ORTHO05D005087 1.7e-40 171.4 189 51.9
VMungo1309G1261 Vigna mungo HOM05D004150 ORTHO05D005087 3.5e-38 163.7 108 72.2
CDE09G0238 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 2.1e-35 154.5 124 55.6
Actinidia33318 Actinidia chinensis HOM05D004150 ORTHO05D005087 4.7e-35 153.3 178 47.2
Haze_09267 Corylus avellana HOM05D004150 ORTHO05D005087 9.9e-33 145.6 150 50.0
Haze_09268 Corylus avellana HOM05D004150 ORTHO05D005087 9.9e-33 145.6 150 50.0
Haze_11864 Corylus avellana HOM05D004150 ORTHO05D005087 1.3e-32 145.2 152 49.3
Gohir.D04G018433 Gossypium hirsutum HOM05D004150 ORTHO05D005087 5.4e-31 139.8 104 66.3
arahy.Tifrunner.gnm1.ann1.H8RDCT Arachis hypogaea HOM05D004150 ORTHO05D005087 9.3e-31 139.0 84 72.6
arahy.Tifrunner.gnm1.ann1.R67SZW Arachis hypogaea HOM05D004150 ORTHO05D005087 9.3e-31 139.0 84 72.6
Gorai.001G168800 Gossypium raimondii HOM05D004150 ORTHO05D005087 2.7e-30 137.5 96 68.8
Gohir.A11G228702 Gossypium hirsutum HOM05D004150 ORTHO05D005087 6.6e-29 132.9 96 66.7
Aqoxy1G01962 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 3.6e-27 127.1 133 51.9
BolC5t30531H Brassica oleracea HOM05D004150 ORTHO05D032065 1.3e-24 118.6 192 40.6
VMungo0251G3124 Vigna mungo HOM05D004150 ORTHO05D005087 1.1e-18 99.0 65 70.8
ECA240G1314 Erigeron canadensis HOM05D000062 ORTHO05D000043 2.1e-11 74.7 46 69.6


User provided reference genes

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