Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C025637.2 Cucumis melo HOM05D005597 ORTHO05D007304 4.8e-252 874.0 435 100.0
CsaV3_4G033140 Cucumis sativus L. HOM05D005597 ORTHO05D007304 4.9e-241 837.4 435 94.9
ClCG11G017480 Citrullus lanatus HOM05D005597 ORTHO05D007304 6.9e-235 817.0 430 94.0
Sed0009860 Sechium edule HOM05D005597 ORTHO05D007304 2.2e-228 795.4 432 91.0
CiPaw.11G160900 Carya illinoinensis HOM05D005597 ORTHO05D007304 1.0e-209 733.4 435 80.7
QL08p026520 Quercus lobata HOM05D005597 ORTHO05D007304 2.5e-208 728.8 434 80.9
Duzib213G0141 Durio zibethinus HOM05D005597 ORTHO05D007304 1.2e-207 726.5 427 81.0
CSS0014594 Camellia sinensis var. sinensis HOM05D005597 ORTHO05D007304 2.1e-207 725.7 435 81.1
Manes.03G102000 Manihot esculenta HOM05D005597 ORTHO05D007304 4.7e-207 724.5 435 79.5
Atru.chr2.2174 Acer truncatum HOM05D005597 ORTHO05D007304 8.0e-207 723.8 434 79.5
Gohir.A13G149000 Gossypium hirsutum HOM05D005597 ORTHO05D007304 1.8e-206 722.6 434 79.3
Thecc.07G110000 Theobroma cacao HOM05D005597 ORTHO05D007304 3.0e-206 721.8 427 79.9
Gorai.013G173400 Gossypium raimondii HOM05D005597 ORTHO05D007304 4.0e-206 721.5 434 79.0
Actinidia12571 Actinidia chinensis HOM05D005597 ORTHO05D007304 6.7e-206 720.7 435 79.8
RcHm_v2.0_Chr5g0031201 Rosa chinensis HOM05D005597 ORTHO05D007304 6.7e-206 720.7 435 79.8
Lalb_Chr01g0006811 Lupinus albus HOM05D005597 ORTHO05D007304 8.8e-206 720.3 432 79.2
Lj8A149T49 Lonicera japonica HOM05D005597 ORTHO05D007304 1.2e-205 719.9 425 81.4
Duzib187G0678 Durio zibethinus HOM05D005597 ORTHO05D007304 2.0e-205 719.2 427 80.6
Duzib213G0888 Durio zibethinus HOM05D005597 ORTHO05D007304 4.4e-205 718.0 427 80.3
arahy.Tifrunner.gnm1.ann1.06PSEJ Arachis hypogaea HOM05D005597 ORTHO05D007304 5.7e-205 717.6 435 79.1
Haze_09335 Corylus avellana HOM05D005597 ORTHO05D007304 5.7e-205 717.6 435 78.9
Dinv14987 Davidia involucrata HOM05D005597 ORTHO05D007304 9.7e-205 716.8 435 79.5
TWI39G1070 Tripterygium wilfordii HOM05D005597 ORTHO05D007304 1.3e-204 716.5 435 78.9
arahy.Tifrunner.gnm1.ann1.Z1JPC4 Arachis hypogaea HOM05D005597 ORTHO05D007304 2.2e-204 715.7 435 78.9
Cfa019573 Carpinus fangiana HOM05D005597 ORTHO05D007304 2.2e-204 715.7 434 79.3
TWI38G1600 Tripterygium wilfordii HOM05D005597 ORTHO05D007304 3.7e-204 714.9 435 78.6
Rhsim06G0207300 Rhododendron simsii HOM05D005597 ORTHO05D007304 6.3e-204 714.1 435 79.3
PGR083G2138 Punica granatum HOM05D005597 ORTHO05D007304 1.8e-203 712.6 435 78.2
GSVIVG01014208001 Vitis vinifera HOM05D005597 ORTHO05D007304 1.8e-203 712.6 435 79.8
Glyma.13G270500 Glycine max HOM05D005597 ORTHO05D007304 2.4e-203 712.2 433 79.9
Hma1.2p1_1016F.1_g248150 Hydrangea macrophylla HOM05D005597 ORTHO05D007304 2.4e-203 712.2 432 79.6
TAR624G0947 Trochodendron aralioides HOM05D005597 ORTHO05D007304 1.2e-202 709.9 434 79.3
Potri.011G110800 Populus trichocarpa HOM05D005597 ORTHO05D007304 1.6e-202 709.5 435 77.7
Glyma.12G229300 Glycine max HOM05D005597 ORTHO05D007304 2.0e-202 709.1 433 79.7
Lj3g0024865 Lotus japonicus HOM05D005597 ORTHO05D007304 4.5e-202 708.0 431 77.5
Nn1g09131 Nelumbo nucifera HOM05D005597 ORTHO05D007304 4.5e-202 708.0 434 79.0
vmacro11932 Vaccinium macrocarpon HOM05D005597 ORTHO05D007304 1.3e-201 706.4 435 77.2
FvH4_3g18450 Fragaria vesca HOM05D005597 ORTHO05D007304 2.2e-201 705.7 435 78.2
FAN11G3052 Fragaria x ananassa HOM05D005597 ORTHO05D007304 5.0e-201 704.5 435 77.9
FAN21G1763 Fragaria x ananassa HOM05D005597 ORTHO05D007304 5.0e-201 704.5 435 78.2
FAN16G1691 Fragaria x ananassa HOM05D005597 ORTHO05D007304 1.1e-200 703.4 435 77.9
SGA_v2.0_scaffold47G17797 Striga asiatica HOM05D005597 ORTHO05D007304 1.1e-200 703.4 427 79.2
COL.COLO4_17568 Corchorus olitorius HOM05D005597 ORTHO05D007304 5.5e-200 701.0 453 75.1
TAR626G0744 Trochodendron aralioides HOM05D005597 ORTHO05D007304 1.2e-199 699.9 434 77.9
Cc05_g11200 Coffea canephora HOM05D005597 ORTHO05D007304 1.6e-199 699.5 428 78.3
Prupe.4G166500 Prunus persica HOM05D005597 ORTHO05D007304 1.6e-199 699.5 435 78.2
MD03G1241900 Malus domestica HOM05D005597 ORTHO05D007304 1.0e-198 696.8 435 77.9
MD11G1261800 Malus domestica HOM05D005597 ORTHO05D007304 1.4e-198 696.4 435 77.5
Gohir.D13G153500 Gossypium hirsutum HOM05D005597 ORTHO05D007304 1.8e-198 696.0 409 80.4
Aqoxy1G02067 Aquilegia oxysepala HOM05D005597 ORTHO05D007304 2.3e-198 695.7 431 76.6
Ca_03990_v3 Cicer arietinum L. HOM05D005597 ORTHO05D007304 2.3e-198 695.7 435 77.2
Phvul.005G066500 Phaseolus vulgaris HOM05D005597 ORTHO05D007304 6.8e-198 694.1 433 76.9
Eucgr.F01228 Eucalyptus grandis HOM05D005597 ORTHO05D007304 4.4e-197 691.4 432 77.3
Medtr2g076680 Medicago truncatula HOM05D005597 ORTHO05D007304 7.5e-197 690.6 435 76.1
VMungo1080G1355 Vigna mungo HOM05D005597 ORTHO05D007304 2.8e-196 688.7 433 77.1
MSTRG.12867 Avicennia marina HOM05D005597 ORTHO05D007304 4.8e-196 688.0 431 75.4
Migut.H01992 Erythranthe guttata HOM05D005597 ORTHO05D007304 6.3e-196 687.6 434 77.0
CAN.G162.8 Capsicum annuum HOM05D005597 ORTHO05D007304 2.4e-195 685.6 428 76.4
Sabra11G0098300 Salix brachista HOM05D005597 ORTHO05D007304 7.0e-195 684.1 479 71.2
TPR.G19385 Trifolium pratense HOM05D005597 ORTHO05D007304 7.0e-195 684.1 442 74.7
Peaxi162Scf00069g02235 Petunia axillaris HOM05D005597 ORTHO05D007304 2.7e-194 682.2 428 76.4
AUR62043187 Chenopodium quinoa HOM05D005597 ORTHO05D007304 5.9e-194 681.0 437 75.5
unitig_749.g13539 Utricularia gibba HOM05D005597 ORTHO05D007304 2.3e-193 679.1 434 74.4
MBI07_g03181_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D007304 3.8e-193 678.3 435 76.1
THA.LOC104812323 Tarenaya hassleriana HOM05D005597 ORTHO05D007304 5.5e-192 674.5 434 76.0
PGSC0003DMG400012388 Solanum tuberosum HOM05D005597 ORTHO05D007304 8.0e-191 670.6 435 74.3
PSO500G0209 Papaver somniferum HOM05D005597 ORTHO05D007304 1.0e-190 670.2 434 75.3
Solyc07g062540.3 Solanum lycopersicum HOM05D005597 ORTHO05D007304 1.0e-190 670.2 428 75.0
BcaB02g06666 Brassica carinata HOM05D005597 ORTHO05D007304 2.3e-190 669.1 434 74.7
BolC5t30227H Brassica oleracea HOM05D005597 ORTHO05D007304 3.0e-190 668.7 434 73.7
PSO675G3712 Papaver somniferum HOM05D005597 ORTHO05D007304 3.0e-190 668.7 434 75.1
Sopen07g030770 Solanum pennellii HOM05D005597 ORTHO05D007304 4.0e-190 668.3 428 75.0
EL10Ac4g08334 Beta vulgaris HOM05D005597 ORTHO05D007304 1.5e-189 666.4 453 72.2
C05p15120 Brassica napus HOM05D005597 ORTHO05D007304 1.5e-189 666.4 434 74.0
Carub.0001s1664 Capsella rubella HOM05D005597 ORTHO05D007304 1.5e-189 666.4 434 74.2
A06p12800 Brassica napus HOM05D005597 ORTHO05D007304 4.4e-189 664.8 434 74.0
BraA06t24441Z Brassica rapa HOM05D005597 ORTHO05D007304 4.4e-189 664.8 434 74.0
AL1G29070 Arabidopsis lyrata HOM05D005597 ORTHO05D007304 5.7e-189 664.5 434 74.7
ECA240G4584 Erigeron canadensis HOM05D000832 ORTHO05D000982 9.8e-189 663.7 431 73.1
CDE02G4663 Ceratophyllum demersum HOM05D005597 ORTHO05D007304 1.3e-188 663.3 435 73.8
Sp1g15040 Schrenkiella parvula HOM05D005597 ORTHO05D007304 2.8e-188 662.1 434 73.7
Hund10564 Selenicereus undatus HOM05D005597 ORTHO05D007304 2.8e-188 662.1 423 75.4
Thhalv10007218m.g Eutrema salsugineum HOM05D005597 ORTHO05D007304 3.7e-188 661.8 434 73.5
Ciclev10019496m.g Citrus clementina HOM05D005597 ORTHO05D007304 8.3e-188 660.6 429 74.4
AT1G16900 Arabidopsis thaliana HOM05D005597 ORTHO05D007304 1.4e-187 659.8 434 73.7
BcaC05g25546 Brassica carinata HOM05D005597 ORTHO05D007304 1.4e-187 659.8 426 73.9
A08p31230 Brassica napus HOM05D005597 ORTHO05D007304 1.8e-187 659.4 434 74.0
BraA08t35046Z Brassica rapa HOM05D005597 ORTHO05D007304 1.8e-187 659.4 434 74.0
C08p17610 Brassica napus HOM05D005597 ORTHO05D007304 5.4e-187 657.9 434 73.7
CARHR017370 Cardamine hirsuta HOM05D005597 ORTHO05D007304 7.0e-187 657.5 434 73.3
CSS0003229 Camellia sinensis var. sinensis HOM05D005597 ORTHO05D007304 9.2e-187 657.1 432 74.8
BolC8t49386H Brassica oleracea HOM05D005597 ORTHO05D007304 1.2e-186 656.8 434 73.5
BcaC07g38821 Brassica carinata HOM05D005597 ORTHO05D007304 2.0e-186 656.0 433 73.7
HanXRQChr14g0442721 Helianthus annuus HOM05D005597 ORTHO05D007304 3.5e-186 655.2 431 72.4
BcaB03g13027 Brassica carinata HOM05D005597 ORTHO05D007304 2.3e-185 652.5 426 73.9
Lsat_1_v5_gn_9_100260 Lactuca sativa HOM05D005597 ORTHO05D007304 1.5e-184 649.8 424 73.3
ATR0602G238 Amborella trichopoda HOM05D005597 ORTHO05D007304 2.1e-183 646.0 435 73.1
FAN25G0069 Fragaria x ananassa HOM05D005597 ORTHO05D007304 3.6e-183 645.2 435 72.9
CANSAT35G0471 Cannabis sativa HOM05D005597 ORTHO05D007304 5.2e-182 641.3 391 79.0
Os01g0209000 Oryza sativa ssp. japonica HOM05D005597 ORTHO05D007304 8.3e-180 634.0 432 71.3
Zm00001eb120330 Zea mays HOM05D005597 ORTHO05D007304 5.6e-176 621.3 429 71.3
HPP92_004052 Vanilla planifolia HOM05D005597 ORTHO05D007304 3.1e-174 615.5 434 69.1
DCAR_013152 Daucus carota HOM05D005597 ORTHO05D007304 2.6e-173 612.5 391 74.4
Aa31LG7G1320 Aethionema arabicum HOM05D005597 ORTHO05D007304 1.0e-169 600.5 422 71.3
SalBow7G0883 Salvia bowleyana HOM05D005597 ORTHO05D007304 1.7e-161 573.2 362 75.4
AUR62019570 Chenopodium quinoa HOM05D005597 ORTHO05D007304 1.9e-155 553.1 435 64.4
Mapoly0059s0091 Marchantia polymorpha HOM05D005597 ORTHO05D007304 1.1e-136 490.7 435 57.0
Hma1.2p1_1016F.1_g248140 Hydrangea macrophylla HOM05D005597 ORTHO05D007304 1.7e-132 476.9 291 80.8
Psat5g238320 Pisum sativum HOM05D005597 ORTHO05D007304 2.6e-125 453.0 288 77.1
Sc03g0010510 Simmondsia chinensis HOM05D005597 ORTHO05D007304 1.6e-122 443.7 293 74.7
Ah.06g185290 Amaranthus hybridus HOM05D005597 ORTHO05D007304 3.5e-122 442.6 287 75.3
Pp3c6_16240 Physcomitrium patens HOM05D005597 ORTHO05D007304 1.8e-113 413.7 442 49.8
AagrBONN_evm.TU.Sc2ySwM_228.833 Anthoceros agrestis HOM05D005597 ORTHO05D007304 1.1e-112 411.0 426 52.3
SMO143G0166 Selaginella moellendorffii HOM05D005597 ORTHO05D007304 1.1e-110 404.4 414 52.4
SHI21385 Sapria himalayana HOM05D000105 ORTHO05D000023 3.2e-91 339.7 221 71.5
Cpa.g.sc97.103 Carica papaya HOM05D005597 ORTHO05D007304 2.7e-90 336.7 203 81.3
Dinv18359 Davidia involucrata HOM05D005597 ORTHO05D007304 6.1e-90 335.5 233 73.4
Oeu059263.1 Olea europaea HOM05D005597 ORTHO05D007304 2.6e-88 330.1 275 65.1
CBR_g38668 Chara braunii HOM05D005597 ORTHO05D007304 1.4e-86 324.3 473 38.7
SEGI_23731 Sequoiadendron giganteum HOM05D005597 ORTHO05D007304 2.2e-79 300.4 224 62.9
SHI21382 Sapria himalayana HOM05D005597 ORTHO05D007304 1.4e-70 271.2 204 66.2
Gohir.A07G160600 Gossypium hirsutum HOM05D005597 ORTHO05D007304 1.9e-59 234.2 148 79.1
Gohir.A04G098250 Gossypium hirsutum HOM05D005597 ORTHO05D007304 2.8e-58 230.3 151 75.5
Gohir.A03G066250 Gossypium hirsutum HOM05D005597 ORTHO05D007304 1.7e-55 221.1 139 79.1
Actinidia09803 Actinidia chinensis HOM05D005597 ORTHO05D007304 9.5e-51 205.3 127 74.8
MCO07G083 Micromonas commoda HOM05D005597 ORTHO05D007304 1.2e-45 188.3 431 32.0
Atru.chr2.2170 Acer truncatum HOM05D005597 ORTHO05D007304 2.4e-41 174.1 96 79.2
Cfa025275 Carpinus fangiana HOM05D005597 ORTHO05D028637 1.3e-39 168.3 414 33.1
PRCOL_00005636 Prasinoderma coloniale HOM05D005597 ORTHO05D007304 1.9e-38 164.5 418 31.6
Nitab4.5_0000246g0240 Nicotiana tabacum HOM05D005597 ORTHO05D007304 4.2e-38 163.3 428 31.3
Nitab4.5_0001145g0050 Nicotiana tabacum HOM05D005597 ORTHO05D007304 4.8e-34 149.8 109 71.6
Lsat_1_v5_gn_9_21740 Lactuca sativa HOM05D005597 ORTHO05D007174 3.4e-32 143.7 120 65.8
Nn1g04407 Nelumbo nucifera HOM05D005597 ORTHO05D007304 9.6e-19 99.0 74 64.9
Potri.001G392050 Populus trichocarpa HOM05D005597 ORTHO05D007304 1.2e-13 82.0 49 73.5


User provided reference genes

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