Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C025628.2 Cucumis melo HOM05D006105 ORTHO05D006345 1.0e-249 866.3 441 100.0
CsaV3_4G033280 Cucumis sativus L. HOM05D006105 ORTHO05D006345 1.4e-222 776.2 441 90.5
ClCG11G017660 Citrullus lanatus HOM05D006105 ORTHO05D006345 1.9e-184 649.4 445 79.3
Sed0005720 Sechium edule HOM05D006105 ORTHO05D006345 1.0e-161 573.9 449 69.5
Sed0015488 Sechium edule HOM05D006105 ORTHO05D006345 1.0e-132 477.6 453 60.7
Prupe.4G171200 Prunus persica HOM05D006105 ORTHO05D006345 9.6e-59 231.9 466 42.1
Duzib268G0903 Durio zibethinus HOM05D006105 ORTHO05D006345 6.9e-57 225.7 455 41.8
Duzib213G0100 Durio zibethinus HOM05D006105 ORTHO05D006345 5.5e-54 216.1 464 42.5
CiPaw.12G115300 Carya illinoinensis HOM05D006105 ORTHO05D006345 3.5e-53 213.4 457 41.1
CiPaw.11G164300 Carya illinoinensis HOM05D006105 ORTHO05D006345 6.7e-52 209.1 454 40.3
Haze_09360 Corylus avellana HOM05D006105 ORTHO05D006345 8.7e-52 208.8 424 41.3
COL.COLO4_17616 Corchorus olitorius HOM05D006105 ORTHO05D006345 2.2e-50 204.1 478 40.0
Cfa019604 Carpinus fangiana HOM05D006105 ORTHO05D006345 4.8e-50 203.0 423 41.6
QL08p027367 Quercus lobata HOM05D006105 ORTHO05D006345 1.8e-49 201.1 432 40.0
Thecc.07G103600 Theobroma cacao HOM05D006105 ORTHO05D006345 2.0e-48 197.6 461 38.8
Ciclev10010617m.g Citrus clementina HOM05D006105 ORTHO05D006345 1.3e-47 194.9 454 37.0
GSVIVG01014239001 Vitis vinifera HOM05D006105 ORTHO05D006345 2.5e-46 190.7 410 40.5
Cpa.g.sc131.73 Carica papaya HOM05D006105 ORTHO05D006345 7.2e-46 189.1 468 38.5
Potri.001G375600 Populus trichocarpa HOM05D006105 ORTHO05D006345 1.6e-45 188.0 456 36.8
Actinidia18787 Actinidia chinensis HOM05D006105 ORTHO05D006345 7.9e-45 185.7 455 38.2
Actinidia35226 Actinidia chinensis HOM05D006105 ORTHO05D006345 3.0e-44 183.7 457 38.3
FAN21G1974 Fragaria x ananassa HOM05D006105 ORTHO05D006345 3.9e-44 183.3 475 36.6
Dinv14962 Davidia involucrata HOM05D006105 ORTHO05D006345 1.1e-43 181.8 414 39.9
MD03G1238800 Malus domestica HOM05D006105 ORTHO05D006345 3.3e-43 180.3 491 36.7
Gorai.004G029900 Gossypium raimondii HOM05D006105 ORTHO05D006345 7.4e-43 179.1 468 37.0
CSS0026032 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 1.3e-42 178.3 450 37.6
FAN25G1303 Fragaria x ananassa HOM05D006105 ORTHO05D006345 1.1e-41 175.3 476 35.5
Gohir.D08G032500 Gossypium hirsutum HOM05D006105 ORTHO05D006345 1.4e-41 174.9 472 36.7
Gohir.A08G021700 Gossypium hirsutum HOM05D006105 ORTHO05D006345 4.1e-41 173.3 443 37.5
Nn1g09023 Nelumbo nucifera HOM05D006105 ORTHO05D006345 1.2e-40 171.8 462 36.4
MELO3C016090.2 Cucumis melo HOM05D006105 ORTHO05D006345 2.0e-40 171.0 449 35.4
Glyma.12G228100 Glycine max HOM05D006105 ORTHO05D006345 3.4e-40 170.2 427 38.2
Glyma.13G271900 Glycine max HOM05D006105 ORTHO05D006345 5.9e-40 169.5 428 38.3
CsaV3_4G008420 Cucumis sativus L. HOM05D006105 ORTHO05D006345 1.7e-39 167.9 442 35.5
Gorai.002G064700 Gossypium raimondii HOM05D006105 ORTHO05D006345 2.9e-39 167.2 460 35.7
RcHm_v2.0_Chr5g0031561 Rosa chinensis HOM05D006105 ORTHO05D006345 2.9e-39 167.2 464 35.8
MD11G1258600 Malus domestica HOM05D006105 ORTHO05D006345 5.0e-39 166.4 495 34.7
Rhsim04G0024000 Rhododendron simsii HOM05D006105 ORTHO05D006345 6.5e-39 166.0 474 35.7
FvH4_3g18750 Fragaria vesca HOM05D006105 ORTHO05D006345 8.5e-39 165.6 477 35.4
FAN16G1829 Fragaria x ananassa HOM05D006105 ORTHO05D006345 8.5e-39 165.6 479 35.3
ClCG07G009910 Citrullus lanatus HOM05D006105 ORTHO05D006345 2.5e-38 164.1 436 36.7
Manes.03G103501 Manihot esculenta HOM05D006105 ORTHO05D006345 4.2e-38 163.3 459 35.9
Phvul.005G068000 Phaseolus vulgaris HOM05D006105 ORTHO05D006345 4.2e-38 163.3 426 37.1
CSS0022090 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 5.5e-38 162.9 468 35.5
VMungo1080G1877 Vigna mungo HOM05D006105 ORTHO05D006345 9.4e-38 162.2 426 36.6
FAN11G0448 Fragaria x ananassa HOM05D006105 ORTHO05D006345 1.2e-37 161.8 480 34.6
Hma1.2p1_0416F.1_g148610 Hydrangea macrophylla HOM05D006105 ORTHO05D006345 4.7e-37 159.8 423 38.8
Sabra16G0247400 Salix brachista HOM05D006105 ORTHO05D006345 1.0e-36 158.7 454 35.2
TAR629G1657 Trochodendron aralioides HOM05D006105 ORTHO05D006345 1.5e-35 154.8 453 35.8
Hma1.2p1_0688F.1_g203660 Hydrangea macrophylla HOM05D006105 ORTHO05D006345 4.4e-35 153.3 411 36.7
Sed0026435 Sechium edule HOM05D006105 ORTHO05D006345 7.4e-35 152.5 451 34.8
TWI38G0440 Tripterygium wilfordii HOM05D006105 ORTHO05D006345 1.1e-33 148.7 425 36.5
AUR62037870 Chenopodium quinoa HOM05D006105 ORTHO05D006345 2.4e-33 147.5 379 35.1
Lalb_Chr25g0286021 Lupinus albus HOM05D006105 ORTHO05D006345 5.3e-33 146.4 456 34.2
Nitab4.5_0005445g0040 Nicotiana tabacum HOM05D006105 ORTHO05D006345 5.3e-33 146.4 452 35.6
Aqoxy1G02199 Aquilegia oxysepala HOM05D006105 ORTHO05D006345 2.6e-32 144.1 462 34.6
TWI39G0145 Tripterygium wilfordii HOM05D006105 ORTHO05D006345 7.7e-32 142.5 447 35.3
Oeu005394.1 Olea europaea HOM05D006105 ORTHO05D006345 1.0e-31 142.1 380 37.6
Rhsim06G0204700 Rhododendron simsii HOM05D006105 ORTHO05D006345 1.3e-31 141.7 455 35.2
Gohir.D01G045100 Gossypium hirsutum HOM05D006105 ORTHO05D006345 2.9e-31 140.6 452 33.0
Lj8A152T79 Lonicera japonica HOM05D006105 ORTHO05D006345 2.9e-31 140.6 376 35.4
AUR62019562 Chenopodium quinoa HOM05D006105 ORTHO05D006345 5.0e-31 139.8 424 33.3
Dinv18338 Davidia involucrata HOM05D006105 ORTHO05D006345 2.5e-30 137.5 319 39.5
Sopen12g005900 Solanum pennellii HOM05D006105 ORTHO05D006345 5.5e-30 136.3 417 34.1
HanXRQChr10g0304731 Helianthus annuus HOM05D006105 ORTHO05D006345 1.2e-29 135.2 479 31.9
Sc03g0010360 Simmondsia chinensis HOM05D006105 ORTHO05D006345 1.6e-29 134.8 372 36.0
Actinidia07497 Actinidia chinensis HOM05D006105 ORTHO05D006345 4.7e-29 133.3 430 34.2
PGSC0003DMG400015376 Solanum tuberosum HOM05D006105 ORTHO05D006345 8.0e-29 132.5 447 33.1
PSO541G5705 Papaver somniferum HOM05D006105 ORTHO05D006345 2.3e-28 131.0 464 32.8
PSO675G6909 Papaver somniferum HOM05D006105 ORTHO05D006345 3.0e-28 130.6 472 33.1
Atru.chr2.2260 Acer truncatum HOM05D006105 ORTHO05D006345 1.1e-27 128.6 381 36.5
Gohir.A01G059000 Gossypium hirsutum HOM05D006105 ORTHO05D006345 4.4e-27 126.7 291 39.2
MSTRG.14216 Avicennia marina HOM05D006105 ORTHO05D006345 1.1e-25 122.1 435 33.8
DCAR_019586 Daucus carota HOM05D006105 ORTHO05D006345 1.4e-25 121.7 457 34.4
Glyma.06G232600 Glycine max HOM05D006105 ORTHO05D006345 1.4e-25 121.7 447 31.3
Peaxi162Scf00000g02515 Petunia axillaris HOM05D006105 ORTHO05D006345 1.4e-25 121.7 384 36.2
Eucgr.F01202 Eucalyptus grandis HOM05D006105 ORTHO05D006345 1.8e-25 121.3 302 38.4
Lj3g0024128 Lotus japonicus HOM05D006105 ORTHO05D006345 5.3e-25 119.8 453 30.9
TAR629G0423 Trochodendron aralioides HOM05D000109 ORTHO05D000965 1.6e-24 118.2 438 33.3
ECA234G3938 Erigeron canadensis HOM05D006105 ORTHO05D006345 4.5e-24 116.7 468 31.0
MBI07_g17039_MAGBIO Magnolia biondii HOM05D006105 ORTHO05D006345 1.3e-23 115.2 419 33.2
Medtr2g078220 Medicago truncatula HOM05D006105 ORTHO05D006345 1.3e-23 115.2 441 31.5
Ca_04016_v3 Cicer arietinum L. HOM05D006105 ORTHO05D006345 1.5e-22 111.7 469 32.2
Gohir.A13G148200 Gossypium hirsutum HOM05D006105 ORTHO05D006345 5.5e-22 109.8 303 37.3
Oeu059277.1 Olea europaea HOM05D006105 ORTHO05D006345 5.5e-22 109.8 438 32.2
DCAR_013141 Daucus carota HOM05D006105 ORTHO05D006345 2.1e-21 107.8 449 29.6
Dinv17387 Davidia involucrata HOM05D006105 ORTHO05D006345 1.0e-20 105.5 449 32.7
Solyc12g014120.3 Solanum lycopersicum HOM05D006105 ORTHO05D006345 4.0e-20 103.6 241 36.9
Nn1g04330 Nelumbo nucifera HOM05D006105 ORTHO05D006345 8.8e-20 102.4 273 38.1
Cc05_g11450 Coffea canephora HOM05D006105 ORTHO05D006345 1.5e-19 101.7 258 35.3
CSS0004572 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 2.0e-19 101.3 230 38.3
TPR.G9213 Trifolium pratense HOM05D006105 ORTHO05D006345 2.6e-19 100.9 440 32.3
MSTRG.14950 Avicennia marina HOM05D006105 ORTHO05D006345 4.8e-18 96.7 447 32.7
Nitab4.5_0003202g0040 Nicotiana tabacum HOM05D006105 ORTHO05D006345 6.3e-18 96.3 429 31.7
TAR627G0886 Trochodendron aralioides HOM05D000157 ORTHO05D006345 1.6e-16 91.7 242 36.0
SGA_v2.0_scaffold73G24208 Striga asiatica HOM05D006105 ORTHO05D006345 2.0e-16 91.3 439 30.3
DCAR_021012 Daucus carota HOM05D006105 ORTHO05D006345 3.5e-16 90.5 381 32.0
Psat5g240600 Pisum sativum HOM05D006105 ORTHO05D006345 5.0e-15 86.7 269 36.4
Peaxi162Scf00069g01930 Petunia axillaris HOM05D006105 ORTHO05D006345 1.9e-14 84.7 440 28.2
Nitab4.5_0000246g0110 Nicotiana tabacum HOM05D006105 ORTHO05D006345 2.5e-14 84.3 462 28.6
arahy.Tifrunner.gnm1.ann1.KE6FEG Arachis hypogaea HOM05D006105 ORTHO05D006345 5.5e-14 83.2 422 30.1
HanXRQChr12g0372831 Helianthus annuus HOM05D006105 ORTHO05D006345 7.2e-14 82.8 446 29.1
Solyc07g062685.2 Solanum lycopersicum HOM05D006105 ORTHO05D006345 1.6e-13 81.6 420 28.8
PGSC0003DMG400021273 Solanum tuberosum HOM05D006105 ORTHO05D006345 2.1e-13 81.3 411 28.5
Glyma.06G232800 Glycine max HOM05D006105 ORTHO05D006345 4.7e-13 80.1 292 28.8
PGR083G1480 Punica granatum HOM05D006105 ORTHO05D006345 4.7e-13 80.1 453 27.4
arahy.Tifrunner.gnm1.ann1.LEI4AX Arachis hypogaea HOM05D006105 ORTHO05D006345 6.1e-13 79.7 426 28.9
Manes.16G035200 Manihot esculenta HOM05D013066 ORTHO05D006345 1.0e-12 79.0 441 30.8
Lsat_1_v5_gn_5_129201 Lactuca sativa HOM05D006105 ORTHO05D006345 1.8e-12 78.2 429 28.9
Sopen07g030920 Solanum pennellii HOM05D006105 ORTHO05D006345 5.2e-12 76.6 420 28.1
DCAR_024487 Daucus carota HOM05D006105 ORTHO05D006345 1.2e-11 75.5 331 28.4
Nitab4.5_0003077g0030 Nicotiana tabacum HOM05D006105 ORTHO05D006345 4.4e-11 73.6 467 27.4
Phvul.011G157100 Phaseolus vulgaris HOM05D006105 ORTHO05D006345 2.2e-10 71.2 407 28.3
SalBow7G2198 Salvia bowleyana HOM05D006105 ORTHO05D006345 2.8e-10 70.9 243 34.6
SalBow7G3373 Salvia bowleyana HOM05D006105 ORTHO05D006345 3.7e-10 70.5 243 34.6
Thecc.06G176400 Theobroma cacao HOM05D013066 ORTHO05D010890 4.9e-10 70.1 478 27.0
Migut.M00751 Erythranthe guttata HOM05D006105 ORTHO05D006345 6.3e-10 69.7 312 30.1
Oeu061338.1 Olea europaea HOM05D006105 ORTHO05D006345 8.3e-10 69.3 234 33.3
VMungo1127G1756 Vigna mungo HOM05D006105 ORTHO05D006345 1.1e-09 68.9 275 28.7
SGA_v2.0_scaffold34G13768 Striga asiatica HOM05D006105 ORTHO05D006345 4.1e-09 67.0 249 30.1
Manes.17G052800 Manihot esculenta HOM05D013066 ORTHO05D010890 7.0e-09 66.2 432 28.9
ECA236G3415 Erigeron canadensis HOM05D006105 ORTHO05D006345 3.5e-08 63.9 211 31.3
Gohir.D10G030600 Gossypium hirsutum HOM05D013066 ORTHO05D010890 3.5e-08 63.9 445 27.9
Potri.004G052900 Populus trichocarpa HOM05D058718 ORTHO05D010890 7.7e-08 62.8 452 25.9
Gorai.011G032500 Gossypium raimondii HOM05D013066 ORTHO05D010890 2.3e-07 61.2 448 26.6
ATR0602G093 Amborella trichopoda HOM05D006105 ORTHO05D006345 3.8e-07 60.5 277 30.0
CANSAT35G1552 Cannabis sativa HOM05D006105 ORTHO05D006345 8.6e-07 59.3 451 26.6


User provided reference genes

Program Settings