Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C025610.2 Cucumis melo HOM05D005607 ORTHO05D008142 2.6e-292 1008.1 526 100.0
CsaV3_4G033450 Cucumis sativus L. HOM05D005607 ORTHO05D008142 1.7e-283 978.8 526 97.0
ClCG11G017810 Citrullus lanatus HOM05D005607 ORTHO05D008142 1.4e-258 896.0 540 87.0
Sed0013999 Sechium edule HOM05D005607 ORTHO05D008142 5.4e-250 867.5 526 85.4
GSVIVG01014288001 Vitis vinifera HOM05D005607 ORTHO05D008142 4.3e-199 698.4 526 68.6
Cfa020607 Carpinus fangiana HOM05D005607 ORTHO05D008142 4.1e-197 691.8 525 68.2
CiPaw.11G167700 Carya illinoinensis HOM05D005607 ORTHO05D008142 4.1e-197 691.8 525 67.4
Prupe.4G175900 Prunus persica HOM05D005607 ORTHO05D008142 6.5e-195 684.5 526 65.2
COL.COLO4_36717 Corchorus olitorius HOM05D005607 ORTHO05D008142 1.4e-194 683.3 525 66.3
CSS0008326 Camellia sinensis var. sinensis HOM05D005607 ORTHO05D008142 1.9e-194 682.9 525 66.5
Thecc.07G096400 Theobroma cacao HOM05D005607 ORTHO05D008142 3.2e-194 682.2 525 66.3
Eucgr.F01169 Eucalyptus grandis HOM05D005607 ORTHO05D008142 1.6e-193 679.9 525 67.2
Cpa.g.sc131.86 Carica papaya HOM05D005607 ORTHO05D008142 2.3e-192 676.0 525 66.1
Gohir.A04G035700 Gossypium hirsutum HOM05D005607 ORTHO05D008142 6.7e-192 674.5 525 66.3
Potri.001G396500 Populus trichocarpa HOM05D005607 ORTHO05D008142 9.7e-191 670.6 528 66.1
Gohir.D05G347700 Gossypium hirsutum HOM05D005607 ORTHO05D008142 2.8e-190 669.1 525 65.5
Lj3g0025006 Lotus japonicus HOM05D005607 ORTHO05D008142 2.8e-190 669.1 524 67.4
TWI38G0301 Tripterygium wilfordii HOM05D005607 ORTHO05D008142 8.2e-190 667.5 525 65.1
Gorai.009G375500 Gossypium raimondii HOM05D005607 ORTHO05D008142 1.8e-189 666.4 525 65.5
MD03G1232700 Malus domestica HOM05D005607 ORTHO05D008142 1.5e-188 663.3 526 64.3
Sabra16G0259600 Salix brachista HOM05D005607 ORTHO05D008142 3.4e-188 662.1 528 66.1
Glyma.06G236100 Glycine max HOM05D005607 ORTHO05D008142 4.5e-188 661.8 526 66.2
arahy.Tifrunner.gnm1.ann1.K8QLTQ Arachis hypogaea HOM05D005607 ORTHO05D008142 5.9e-188 661.4 527 66.2
Ciclev10007885m.g Citrus clementina HOM05D005607 ORTHO05D008142 1.3e-187 660.2 525 64.2
RcHm_v2.0_Chr5g0032701 Rosa chinensis HOM05D005607 ORTHO05D008142 1.3e-187 660.2 525 65.7
Ca_23036_v3 Cicer arietinum L. HOM05D005607 ORTHO05D008142 7.2e-186 654.4 524 64.9
Rhsim06G0202700 Rhododendron simsii HOM05D005607 ORTHO05D008142 2.7e-185 652.5 540 63.5
arahy.Tifrunner.gnm1.ann1.3D346W Arachis hypogaea HOM05D005607 ORTHO05D008142 1.0e-184 650.6 527 65.1
FvH4_3g19420 Fragaria vesca HOM05D005607 ORTHO05D008142 3.9e-184 648.7 525 64.0
Medtr8g058790 Medicago truncatula HOM05D005607 ORTHO05D008142 8.8e-184 647.5 520 65.0
Medtr8g061280 Medicago truncatula HOM05D005607 ORTHO05D008142 8.8e-184 647.5 520 65.0
Dinv20204 Davidia involucrata HOM05D005607 ORTHO05D008142 3.3e-183 645.6 525 64.6
Manes.03G105800 Manihot esculenta HOM05D005607 ORTHO05D008142 1.3e-182 643.7 525 63.8
Duzib213G0871 Durio zibethinus HOM05D005607 ORTHO05D008142 2.2e-182 642.9 496 66.5
Lalb_Chr19g0134061 Lupinus albus HOM05D005607 ORTHO05D008142 3.1e-181 639.0 525 64.8
vmacro11890 Vaccinium macrocarpon HOM05D005607 ORTHO05D008142 4.1e-181 638.6 548 61.3
vmacro23190 Vaccinium macrocarpon HOM05D005607 ORTHO05D008142 5.3e-181 638.3 548 61.3
CANSAT35G0745 Cannabis sativa HOM05D005607 ORTHO05D008142 2.0e-180 636.3 526 62.9
PGR083G1887 Punica granatum HOM05D005607 ORTHO05D008142 3.5e-180 635.6 520 63.3
Actinidia31524 Actinidia chinensis HOM05D005607 ORTHO05D008142 5.9e-180 634.8 525 62.7
Nn1g04204 Nelumbo nucifera HOM05D005607 ORTHO05D008142 1.3e-179 633.6 526 63.1
MSTRG.12893 Avicennia marina HOM05D005607 ORTHO05D008142 1.1e-178 630.6 525 62.1
TPR.G28174 Trifolium pratense HOM05D005607 ORTHO05D008142 1.5e-178 630.2 525 63.2
Nitab4.5_0008275g0010 Nicotiana tabacum HOM05D005607 ORTHO05D008142 2.5e-178 629.4 525 61.7
CSS0003695 Camellia sinensis var. sinensis HOM05D005607 ORTHO05D008142 4.2e-178 628.6 537 62.0
Haze_09409 Corylus avellana HOM05D005607 ORTHO05D008142 7.2e-178 627.9 567 59.8
Nitab4.5_0002330g0110 Nicotiana tabacum HOM05D005607 ORTHO05D008142 9.4e-178 627.5 525 61.7
Atru.chr2.2407 Acer truncatum HOM05D005607 ORTHO05D008142 4.7e-177 625.2 525 62.3
Cc05_g11730 Coffea canephora HOM05D005607 ORTHO05D008142 6.1e-177 624.8 525 61.7
CAN.G162.36 Capsicum annuum HOM05D005607 ORTHO05D008142 3.0e-176 622.5 526 61.4
FAN16G0865 Fragaria x ananassa HOM05D005607 ORTHO05D008142 5.2e-176 621.7 539 61.2
Sopen07g031060 Solanum pennellii HOM05D005607 ORTHO05D008142 1.1e-175 620.5 525 61.0
Sc16g0007180 Simmondsia chinensis HOM05D005607 ORTHO05D008142 9.7e-175 617.5 527 58.8
Eucgr.F01141 Eucalyptus grandis HOM05D005607 ORTHO05D008142 2.4e-173 612.8 525 62.5
THA.LOC104815562 Tarenaya hassleriana HOM05D005607 ORTHO05D008142 5.9e-172 608.2 526 59.9
HanXRQChr15g0495421 Helianthus annuus HOM05D005607 ORTHO05D008142 2.6e-167 592.8 526 58.4
MD11G1253400 Malus domestica HOM05D005607 ORTHO05D008142 5.7e-167 591.7 465 65.4
ECA236G2999 Erigeron canadensis HOM05D005607 ORTHO05D008142 1.4e-165 587.0 526 57.6
Eucgr.F00890 Eucalyptus grandis HOM05D005607 ORTHO05D008142 1.8e-165 586.6 525 59.8
PSO832G0774 Papaver somniferum HOM05D005607 ORTHO05D008142 2.4e-165 586.3 526 58.6
PSO210G5410 Papaver somniferum HOM05D005607 ORTHO05D008142 3.1e-165 585.9 526 58.7
VMungo1127G0827 Vigna mungo HOM05D005607 ORTHO05D008142 5.4e-165 585.1 526 59.1
Oeu005401.4 Olea europaea HOM05D005607 ORTHO05D008142 9.1e-165 584.3 643 51.3
DCAR_017123 Daucus carota HOM05D005607 ORTHO05D008142 1.6e-164 583.6 561 56.3
Carub.0003s1483 Capsella rubella HOM05D005607 ORTHO05D008142 4.5e-164 582.0 521 58.0
AT3G15180 Arabidopsis thaliana HOM05D005607 ORTHO05D008142 7.7e-164 581.3 521 57.0
Sp3g13390 Schrenkiella parvula HOM05D005607 ORTHO05D008142 1.7e-163 580.1 525 56.4
Lsat_1_v5_gn_7_104480 Lactuca sativa HOM05D005607 ORTHO05D008142 2.9e-163 579.3 527 57.7
AL3G27570 Arabidopsis lyrata HOM05D005607 ORTHO05D008142 7.2e-162 574.7 521 56.8
BraA05t22250Z Brassica rapa HOM05D005607 ORTHO05D008142 2.1e-161 573.2 521 55.9
Thhalv10020515m.g Eutrema salsugineum HOM05D005607 ORTHO05D008142 4.9e-158 562.0 521 54.5
A05p34290 Brassica napus HOM05D005607 ORTHO05D008142 1.4e-157 560.5 548 53.3
C05p52050 Brassica napus HOM05D005607 ORTHO05D008142 4.1e-157 558.9 547 53.4
BolC5t33890H Brassica oleracea HOM05D005607 ORTHO05D008142 5.4e-157 558.5 535 53.8
Aa31LG8G2380 Aethionema arabicum HOM05D005607 ORTHO05D008142 3.5e-156 555.8 532 54.9
BcaB06g29542 Brassica carinata HOM05D005607 ORTHO05D008142 3.6e-153 545.8 521 54.3
Aqoxy4G00691 Aquilegia oxysepala HOM05D005607 ORTHO05D008142 4.7e-153 545.4 473 60.5
EL10Ac4g08241 Beta vulgaris HOM05D005607 ORTHO05D008142 8.0e-153 544.7 522 56.9
Ah.06g184600 Amaranthus hybridus HOM05D005607 ORTHO05D008142 3.0e-152 542.7 527 55.8
Duzib170G0139 Durio zibethinus HOM05D005607 ORTHO05D008142 4.4e-151 538.9 525 56.8
ATR0737G117 Amborella trichopoda HOM05D005607 ORTHO05D008142 9.8e-151 537.7 521 54.5
SGA_v2.0_scaffold130G34350 Striga asiatica HOM05D005607 ORTHO05D008142 3.7e-150 535.8 573 51.8
CDE10G0361 Ceratophyllum demersum HOM05D005607 ORTHO05D008142 8.0e-145 518.1 517 53.8
Phvul.011G160300 Phaseolus vulgaris HOM05D005607 ORTHO05D008142 7.8e-140 501.5 451 60.1
Migut.H01958 Erythranthe guttata HOM05D005607 ORTHO05D008142 6.6e-139 498.4 447 56.8
Os05g0557200 Oryza sativa ssp. japonica HOM05D005607 ORTHO05D008142 6.2e-137 491.9 516 48.1
Psat7g207160 Pisum sativum HOM05D005607 ORTHO05D008142 4.0e-136 489.2 423 61.7
Zm00001eb295460 Zea mays HOM05D005607 ORTHO05D008142 1.7e-134 483.8 516 47.1
Lj1A839T37 Lonicera japonica HOM05D005607 ORTHO05D008142 6.4e-126 455.3 389 61.4
Hund02235 Selenicereus undatus HOM05D005607 ORTHO05D008142 9.9e-119 431.4 402 57.2
Lj1A839T35 Lonicera japonica HOM05D005607 ORTHO05D008142 1.5e-114 417.5 411 56.4
AUR62019473 Chenopodium quinoa HOM05D005607 ORTHO05D008142 1.6e-108 397.5 556 43.7
Peaxi162Scf00069g01839 Petunia axillaris HOM05D005607 ORTHO05D008142 2.5e-106 390.2 328 62.5
AUR62036159 Chenopodium quinoa HOM05D005607 ORTHO05D008142 4.3e-106 389.4 526 44.5
Solyc07g062860.3 Solanum lycopersicum HOM05D005607 ORTHO05D008142 2.6e-103 380.2 328 61.3
SalBow7G3213 Salvia bowleyana HOM05D005607 ORTHO05D008142 3.7e-89 333.2 290 57.9
SalBow7G3521 Salvia bowleyana HOM05D005607 ORTHO05D008142 3.7e-89 333.2 290 57.9
unitig_749.g13531 Utricularia gibba HOM05D005607 ORTHO05D008142 7.6e-87 325.5 378 50.0
AagrBONN_evm.TU.Sc2ySwM_344.1287 Anthoceros agrestis HOM05D005607 ORTHO05D008142 7.9e-84 315.5 515 35.7
MBI06_g04182_MAGBIO Magnolia biondii HOM05D005607 ORTHO05D008142 9.4e-77 292.0 352 50.0
Pp3c1_12630 Physcomitrium patens HOM05D005607 ORTHO05D008142 1.8e-75 287.7 541 32.9
QL08p023962 Quercus lobata HOM05D005607 ORTHO05D008142 4.3e-74 283.1 236 64.0
SMO139G0024 Selaginella moellendorffii HOM05D005607 ORTHO05D008142 4.8e-73 279.6 527 34.2
FAN11G3919 Fragaria x ananassa HOM05D005607 ORTHO05D008142 1.2e-71 275.0 268 56.7
QL08p023973 Quercus lobata HOM05D005607 ORTHO05D008142 6.5e-70 269.2 192 69.8
MD11G1279000 Malus domestica HOM05D005607 ORTHO05D008142 2.7e-60 237.3 286 50.3
Glyma.12G162201 Glycine max HOM05D005607 ORTHO05D008142 3.0e-59 233.8 172 67.4
CARHR090160 Cardamine hirsuta HOM05D005607 ORTHO05D008142 9.1e-56 222.2 229 50.7
Peaxi162Scf00069g01838 Petunia axillaris HOM05D005607 ORTHO05D008142 4.2e-53 213.4 163 63.2
PGSC0003DMG400012404 Solanum tuberosum HOM05D005607 ORTHO05D008142 2.7e-52 210.7 214 53.3
SMO145G0057 Selaginella moellendorffii HOM05D005607 ORTHO05D008142 4.8e-49 199.9 501 30.3
FAN25G1444 Fragaria x ananassa HOM05D005607 ORTHO05D008142 5.6e-37 159.8 111 67.6
QL08p023949 Quercus lobata HOM05D005607 ORTHO05D008142 2.8e-36 157.5 101 73.3
CBR_g2884 Chara braunii HOM05D005607 ORTHO05D008142 1.4e-35 155.2 290 36.6
MELO3C033904.2 Cucumis melo HOM05D005607 ORTHO05D008142 3.2e-32 144.1 95 86.3
SEGI_34734 Sequoiadendron giganteum HOM05D005607 ORTHO05D008142 3.3e-29 134.0 126 52.4
SEGI_17376 Sequoiadendron giganteum HOM05D005607 ORTHO05D008142 3.6e-20 104.0 135 39.3
EL10Ac6g14983 Beta vulgaris HOM05D005607 ORTHO05D008142 3.1e-19 100.9 101 51.5
MELO3C030698.2 Cucumis melo HOM05D005607 ORTHO05D169846 9.8e-18 95.9 96 63.5
MELO3C033728.2 Cucumis melo HOM05D005607 ORTHO05D169673 5.6e-13 80.1 46 89.1
MELO3C033981.2 Cucumis melo HOM05D005607 ORTHO05D166899 2.8e-12 77.8 67 73.1
MELO3C029056.2 Cucumis melo HOM05D005607 ORTHO05D170482 2.4e-08 64.7 128 42.2
MELO3C035675.2 Cucumis melo HOM05D005607 ORTHO05D166573 1.6e-07 62.0 46 78.3
HanXRQChr10g0304121 Helianthus annuus HOM05D005607 ORTHO05D008142 3.9e-06 57.4 64 51.6


User provided reference genes

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