Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C025609.2 Cucumis melo HOM05D006014 ORTHO05D007608 7.6e-90 334.0 185 100.0
CsaV3_4G033460 Cucumis sativus L. HOM05D006014 ORTHO05D007608 6.0e-87 324.3 185 96.2
ClCG11G017820 Citrullus lanatus HOM05D006014 ORTHO05D007608 7.3e-77 290.8 185 86.5
Sed0004006 Sechium edule HOM05D006014 ORTHO05D007608 3.4e-66 255.4 185 78.4
QL08p024005 Quercus lobata HOM05D006014 ORTHO05D007608 4.9e-57 224.9 180 73.3
Potri.001G396600 Populus trichocarpa HOM05D006014 ORTHO05D007608 2.5e-56 222.6 178 71.9
Sabra16G0259700 Salix brachista HOM05D006014 ORTHO05D007608 2.7e-55 219.2 178 69.7
CSS0037767 Camellia sinensis var. sinensis HOM05D006014 ORTHO05D007608 6.0e-55 218.0 180 72.2
Manes.15G089600 Manihot esculenta HOM05D006014 ORTHO05D007608 7.9e-55 217.6 180 71.1
GSVIVG01014290001 Vitis vinifera HOM05D006014 ORTHO05D007608 2.3e-54 216.1 188 69.1
Ciclev10009636m.g Citrus clementina HOM05D006014 ORTHO05D007608 3.0e-54 215.7 172 71.5
Nitab4.5_0003033g0060 Nicotiana tabacum HOM05D006014 ORTHO05D007608 1.9e-53 213.0 185 68.1
Hma1.2p1_1411F.1_g281760 Hydrangea macrophylla HOM05D006014 ORTHO05D007608 3.3e-53 212.2 180 71.1
Nn1g04203 Nelumbo nucifera HOM05D006014 ORTHO05D007608 5.7e-53 211.5 177 70.1
Dinv14938 Davidia involucrata HOM05D006014 ORTHO05D007608 1.6e-52 209.9 186 69.4
FAN21G0470 Fragaria x ananassa HOM05D006014 ORTHO05D007608 1.6e-52 209.9 190 69.5
FvH4_3g19430 Fragaria vesca HOM05D006014 ORTHO05D007608 2.1e-52 209.5 190 69.5
FAN11G2300 Fragaria x ananassa HOM05D006014 ORTHO05D007608 2.1e-52 209.5 190 69.5
Nitab4.5_0013317g0010 Nicotiana tabacum HOM05D006014 ORTHO05D007608 2.1e-52 209.5 171 68.4
Sed0026173 Sechium edule HOM05D006014 ORTHO05D007608 2.1e-52 209.5 185 68.6
RcHm_v2.0_Chr5g0032711 Rosa chinensis HOM05D006014 ORTHO05D007608 3.7e-52 208.8 181 70.7
PGR083G0398 Punica granatum HOM05D006014 ORTHO05D007608 4.8e-52 208.4 178 68.0
FAN25G0078 Fragaria x ananassa HOM05D006014 ORTHO05D007608 8.2e-52 207.6 190 68.9
CiPaw.11G167800 Carya illinoinensis HOM05D006014 ORTHO05D007608 1.1e-51 207.2 171 73.1
TAR626G1430 Trochodendron aralioides HOM05D006014 ORTHO05D007608 1.4e-51 206.8 176 71.6
COL.COLO4_03477 Corchorus olitorius HOM05D006014 ORTHO05D007608 2.4e-51 206.1 180 68.3
MD03G1232600 Malus domestica HOM05D006014 ORTHO05D007608 3.1e-51 205.7 182 68.1
Thecc.07G096300 Theobroma cacao HOM05D006014 ORTHO05D007608 6.9e-51 204.5 175 69.1
TAR624G0768 Trochodendron aralioides HOM05D006014 ORTHO05D007608 9.0e-51 204.1 147 76.9
TWI38G2086 Tripterygium wilfordii HOM05D006014 ORTHO05D007608 1.5e-50 203.4 178 65.7
Haze_09409 Corylus avellana HOM05D005607 ORTHO05D008142 2.0e-50 203.0 142 79.6
CANSAT35G1465 Cannabis sativa HOM05D006014 ORTHO05D007608 2.6e-50 202.6 178 69.1
Solyc07g062870.3 Solanum lycopersicum HOM05D006014 ORTHO05D007608 4.5e-50 201.8 177 63.8
Sopen07g031070 Solanum pennellii HOM05D006014 ORTHO05D007608 4.5e-50 201.8 177 63.8
Cc05_g11740 Coffea canephora HOM05D006014 ORTHO05D007608 7.6e-50 201.1 181 64.6
MD11G1253300 Malus domestica HOM05D006014 ORTHO05D007608 7.6e-50 201.1 177 68.4
Peaxi162Scf00069g01737 Petunia axillaris HOM05D006014 ORTHO05D007608 7.6e-50 201.1 177 63.8
Duzib170G0605 Durio zibethinus HOM05D006014 ORTHO05D007608 2.2e-49 199.5 182 65.9
Gohir.D05G347800 Gossypium hirsutum HOM05D006014 ORTHO05D007608 6.5e-49 198.0 174 66.1
Gorai.009G375600 Gossypium raimondii HOM05D006014 ORTHO05D007608 6.5e-49 198.0 174 66.1
Gohir.A04G035600 Gossypium hirsutum HOM05D006014 ORTHO05D007608 8.5e-49 197.6 174 66.7
PSO675G1148 Papaver somniferum HOM05D006014 ORTHO05D007608 1.9e-48 196.4 186 61.8
PGSC0003DMG400012405 Solanum tuberosum HOM05D006014 ORTHO05D007608 4.2e-48 195.3 177 62.1
C01p49380 Brassica napus HOM05D006014 ORTHO05D007608 7.2e-48 194.5 185 62.2
DCAR_019570 Daucus carota HOM05D006014 ORTHO05D007608 7.2e-48 194.5 180 63.9
PSO541G1420 Papaver somniferum HOM05D006014 ORTHO05D007608 9.3e-48 194.1 186 61.3
Glyma.12G162300 Glycine max HOM05D006014 ORTHO05D007608 1.2e-47 193.7 178 66.9
Lj3g0022855 Lotus japonicus HOM05D006014 ORTHO05D007608 1.2e-47 193.7 185 65.4
Eucgr.F01167 Eucalyptus grandis HOM05D006014 ORTHO05D007608 1.6e-47 193.4 181 65.2
THA.LOC104815561 Tarenaya hassleriana HOM05D006014 ORTHO05D007608 1.6e-47 193.4 189 64.0
VMungo1127G0848 Vigna mungo HOM05D006014 ORTHO05D007608 1.6e-47 193.4 186 66.1
Glyma.06G236200 Glycine max HOM05D006014 ORTHO05D007608 3.6e-47 192.2 186 66.7
Aqoxy1G02326 Aquilegia oxysepala HOM05D006014 ORTHO05D007608 4.6e-47 191.8 175 63.4
Lsat_1_v5_gn_5_128220 Lactuca sativa HOM05D006014 ORTHO05D007608 4.6e-47 191.8 187 63.1
BolC1t04895H Brassica oleracea HOM05D006014 ORTHO05D007608 6.1e-47 191.4 179 63.1
Ah.06g184580 Amaranthus hybridus HOM05D006014 ORTHO05D007608 1.0e-46 190.7 184 63.6
AUR62036161 Chenopodium quinoa HOM05D006014 ORTHO05D007608 1.0e-46 190.7 178 64.0
Prupe.4G176000 Prunus persica HOM05D006014 ORTHO05D007608 1.0e-46 190.7 188 62.8
Sp3g13400 Schrenkiella parvula HOM05D006014 ORTHO05D007608 1.0e-46 190.7 191 60.7
Oeu051088.1 Olea europaea HOM05D006014 ORTHO05D007608 1.3e-46 190.3 184 65.2
Phvul.011G162800 Phaseolus vulgaris HOM05D006014 ORTHO05D007608 1.3e-46 190.3 186 66.7
TPR.G28172 Trifolium pratense HOM05D006014 ORTHO05D007608 1.8e-46 189.9 186 64.5
A03p39200 Brassica napus HOM05D006014 ORTHO05D007608 3.0e-46 189.1 185 62.7
BraA03t13069Z Brassica rapa HOM05D006014 ORTHO05D007608 3.0e-46 189.1 187 63.1
AUR62019472 Chenopodium quinoa HOM05D006014 ORTHO05D007608 5.1e-46 188.3 178 63.5
Nitab4.5_0002330g0100 Nicotiana tabacum HOM05D006014 ORTHO05D007608 5.1e-46 188.3 194 58.8
Oeu037371.1 Olea europaea HOM05D006014 ORTHO05D007608 5.1e-46 188.3 162 68.5
EL10Ac4g08237 Beta vulgaris HOM05D006014 ORTHO05D007608 6.7e-46 188.0 178 62.9
Sc03g0010200 Simmondsia chinensis HOM05D006014 ORTHO05D007608 8.7e-46 187.6 177 65.5
CDE10G1292 Ceratophyllum demersum HOM05D006014 ORTHO05D007608 1.5e-45 186.8 178 63.5
BcaB04g20944 Brassica carinata HOM05D006014 ORTHO05D007608 1.9e-45 186.4 178 61.8
A05p34280 Brassica napus HOM05D006014 ORTHO05D007608 1.9e-45 186.4 189 60.8
BraA05t22249Z Brassica rapa HOM05D006014 ORTHO05D007608 1.9e-45 186.4 189 60.8
CDE10G0058 Ceratophyllum demersum HOM05D006014 ORTHO05D007608 1.9e-45 186.4 177 63.3
Ca_23028_v3 Cicer arietinum L. HOM05D006014 ORTHO05D007608 1.9e-45 186.4 178 64.0
Ca_23030_v3 Cicer arietinum L. HOM05D006014 ORTHO05D007608 1.9e-45 186.4 178 64.0
SalBow8G3070 Salvia bowleyana HOM05D006014 ORTHO05D007608 5.7e-45 184.9 186 63.4
BcaB06g29543 Brassica carinata HOM05D006014 ORTHO05D007608 7.4e-45 184.5 190 61.1
Hund04492 Selenicereus undatus HOM05D006014 ORTHO05D007608 7.4e-45 184.5 184 61.4
CARHR090180 Cardamine hirsuta HOM05D006014 ORTHO05D007608 9.7e-45 184.1 190 61.1
Migut.H01957 Erythranthe guttata HOM05D006014 ORTHO05D007608 9.7e-45 184.1 189 59.8
A01p38830 Brassica napus HOM05D006014 ORTHO05D007608 1.3e-44 183.7 182 62.1
BraA01t03929Z Brassica rapa HOM05D006014 ORTHO05D007608 1.3e-44 183.7 182 62.1
Lalb_Chr07g0182891 Lupinus albus HOM05D006014 ORTHO05D007608 1.3e-44 183.7 186 61.8
AT3G15190 Arabidopsis thaliana HOM05D006014 ORTHO05D007608 2.2e-44 183.0 187 61.5
Thhalv10021521m.g Eutrema salsugineum HOM05D006014 ORTHO05D007608 3.7e-44 182.2 194 60.3
C05p52040 Brassica napus HOM05D006014 ORTHO05D007608 6.3e-44 181.4 190 58.9
Cfa020606 Carpinus fangiana HOM05D006014 ORTHO05D007608 6.3e-44 181.4 129 78.3
MBI07_g30170_MAGBIO Magnolia biondii HOM05D006014 ORTHO05D007608 1.1e-43 180.6 181 62.4
Nitab4.5_0000332g0180 Nicotiana tabacum HOM05D006014 ORTHO05D007608 1.4e-43 180.3 185 61.1
MSTRG.12894 Avicennia marina HOM05D006014 ORTHO05D007608 3.1e-43 179.1 175 63.4
Carub.0003s1484 Capsella rubella HOM05D006014 ORTHO05D007608 3.1e-43 179.1 187 59.9
HanXRQChr10g0302621 Helianthus annuus HOM05D006014 ORTHO05D007608 3.1e-43 179.1 189 59.3
AL3G27580 Arabidopsis lyrata HOM05D006014 ORTHO05D007608 4.1e-43 178.7 184 60.9
arahy.Tifrunner.gnm1.ann1.FY4UJ9 Arachis hypogaea HOM05D006014 ORTHO05D007608 6.9e-43 177.9 217 55.8
ECA234G0345 Erigeron canadensis HOM05D006014 ORTHO05D007608 6.9e-43 177.9 184 60.3
Psat4g136440 Pisum sativum HOM05D006014 ORTHO05D007608 2.0e-42 176.4 178 60.7
BolC3t17032H Brassica oleracea HOM05D006014 ORTHO05D007608 2.6e-42 176.0 122 75.4
BcaC01g03887 Brassica carinata HOM05D006014 ORTHO05D007608 5.9e-42 174.9 122 74.6
Medtr8g061350 Medicago truncatula HOM05D006014 ORTHO05D007608 6.5e-41 171.4 186 59.7
C03p47570 Brassica napus HOM05D006014 ORTHO05D007608 8.5e-41 171.0 159 61.0
Aa31LG8G2390 Aethionema arabicum HOM05D006014 ORTHO05D007608 5.5e-40 168.3 193 56.5
Actinidia35240 Actinidia chinensis HOM05D006014 ORTHO05D007608 7.2e-40 167.9 118 78.0
ATR0737G141 Amborella trichopoda HOM05D006014 ORTHO05D007608 2.7e-39 166.0 114 78.1
TWI39G1175 Tripterygium wilfordii HOM05D006014 ORTHO05D007608 7.9e-39 164.5 128 71.1
Rhsim04G0022600 Rhododendron simsii HOM05D006014 ORTHO05D007608 6.7e-38 161.4 185 56.2
unitig_749.g13531 Utricularia gibba HOM05D005607 ORTHO05D008142 2.0e-37 159.8 184 58.2
arahy.Tifrunner.gnm1.ann1.QT5AN8 Arachis hypogaea HOM05D006014 ORTHO05D007608 1.8e-35 153.3 270 43.7
Lj3g0017472 Lotus japonicus HOM05D006014 ORTHO05D007608 8.5e-33 144.4 119 68.9
Mapoly0009s0159 Marchantia polymorpha HOM05D006014 ORTHO05D007608 3.6e-31 139.0 181 52.5
SEGI_01083 Sequoiadendron giganteum HOM05D006014 ORTHO05D007608 6.1e-31 138.3 147 57.1
Lj8A154T77 Lonicera japonica HOM05D006014 ORTHO05D007608 1.4e-27 127.1 171 49.1
Zm00001eb360330 Zea mays HOM05D006014 ORTHO05D007608 2.6e-26 122.9 147 53.7
BcaC09g48477 Brassica carinata HOM05D006014 ORTHO05D007608 3.5e-26 122.5 138 58.0
Os01g0678600 Oryza sativa ssp. japonica HOM05D006014 ORTHO05D007608 1.0e-25 120.9 199 45.2
Pp3c24_17080 Physcomitrium patens HOM05D006014 ORTHO05D007608 1.3e-25 120.6 166 49.4
CBR_g30802 Chara braunii HOM05D006014 ORTHO05D007608 4.2e-24 115.5 163 46.0
AagrBONN_evm.TU.Sc2ySwM_344.3794 Anthoceros agrestis HOM05D006014 ORTHO05D007608 2.1e-23 113.2 180 45.6
SGA_v2.0_scaffold70G23686 Striga asiatica HOM05D006014 ORTHO05D007608 3.6e-23 112.5 352 32.7
Pp3c20_13390 Physcomitrium patens HOM05D006014 ORTHO05D007608 6.7e-22 108.2 185 43.8
vmacro09523 Vaccinium macrocarpon HOM05D006014 ORTHO05D007608 9.7e-21 104.4 73 71.2
Dinv20203 Davidia involucrata HOM05D006014 ORTHO05D007608 1.7e-17 93.6 107 59.8
CBR_g39307 Chara braunii HOM05D006014 ORTHO05D007608 8.5e-17 91.3 82 58.5
Gohir.A13G146850 Gossypium hirsutum HOM05D006014 ORTHO05D007608 1.5e-16 90.5 68 72.1
Cre12.g494750 Chlamydomonas reinhardtii HOM05D006014 ORTHO05D007608 4.7e-15 85.5 111 50.5
Cpa.g.sc131.85 Carica papaya HOM05D006014 ORTHO05D007608 8.0e-15 84.7 105 57.1
MCO10G118 Micromonas commoda HOM05D006014 ORTHO05D007608 9.1e-11 71.2 91 45.1
Atru.chr2.2408 Acer truncatum HOM05D006014 ORTHO05D007608 3.8e-09 65.9 53 73.6
HPP92_010061 Vanilla planifolia HOM05D006014 ORTHO05D007608 5.0e-09 65.5 75 58.7
QL11p029078 Quercus lobata HOM05D006014 ORTHO05D013998 6.5e-09 65.1 68 64.7


User provided reference genes

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