Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C025606.2 Cucumis melo HOM05D007892 ORTHO05D009211 3.6e-290 1001.1 536 100.0
CsaV3_4G033500 Cucumis sativus L. HOM05D007892 ORTHO05D009211 1.6e-213 746.5 528 79.4
ClCG11G017870 Citrullus lanatus HOM05D007892 ORTHO05D009211 6.6e-212 741.1 521 79.8
Sed0012696 Sechium edule HOM05D007892 ORTHO05D009211 5.7e-147 525.4 473 67.2
Sed0010274 Sechium edule HOM05D007892 ORTHO05D009211 4.4e-46 190.3 152 69.1
Dinv20199 Davidia involucrata HOM05D007892 ORTHO05D009211 1.0e-34 152.5 547 33.8
Cfa020559 Carpinus fangiana HOM05D007892 ORTHO05D009211 5.2e-31 140.2 572 32.2
GSVIVG01014294001 Vitis vinifera HOM05D007892 ORTHO05D009211 4.9e-29 133.7 556 34.0
CiPaw.11G172000 Carya illinoinensis HOM05D007892 ORTHO05D009211 1.8e-28 131.7 560 32.3
FAN25G2763 Fragaria x ananassa HOM05D007892 ORTHO05D009211 7.7e-27 126.3 571 32.7
MD11G1252600 Malus domestica HOM05D007892 ORTHO05D009211 1.3e-26 125.6 547 30.7
FAN21G3246 Fragaria x ananassa HOM05D007892 ORTHO05D009211 1.7e-26 125.2 563 32.3
Haze_09454 Corylus avellana HOM05D007892 ORTHO05D009211 2.9e-26 124.4 510 31.2
CANSAT56G4073 Cannabis sativa HOM05D007892 ORTHO05D009211 2.5e-25 121.3 478 33.1
Prupe.4G176400 Prunus persica HOM05D007892 ORTHO05D009211 2.5e-25 121.3 502 31.9
FvH4_3g19480 Fragaria vesca HOM05D007892 ORTHO05D009211 3.6e-24 117.5 509 32.0
Eucgr.F01161 Eucalyptus grandis HOM05D007892 ORTHO05D009211 4.0e-23 114.0 552 30.3
Dinv14936 Davidia involucrata HOM05D007892 ORTHO05D009211 4.4e-22 110.5 541 32.5
FAN11G1893 Fragaria x ananassa HOM05D007892 ORTHO05D009211 4.4e-22 110.5 502 31.7
Duzib213G0678 Durio zibethinus HOM05D007892 ORTHO05D009211 4.9e-21 107.1 608 28.8
TWI38G1391 Tripterygium wilfordii HOM05D007892 ORTHO05D009211 6.4e-21 106.7 571 30.5
MD03G1231500 Malus domestica HOM05D007892 ORTHO05D009211 1.4e-20 105.5 549 30.8
Thecc.07G095700 Theobroma cacao HOM05D007892 ORTHO05D009211 1.8e-20 105.1 540 28.5
CSS0030192 Camellia sinensis var. sinensis HOM05D007892 ORTHO05D009211 7.0e-20 103.2 489 29.7
CSS0005747 Camellia sinensis var. sinensis HOM05D007892 ORTHO05D009211 1.2e-19 102.4 489 29.4
Gorai.002G067800 Gossypium raimondii HOM05D007892 ORTHO05D009211 1.2e-19 102.4 582 29.7
TAR626G1218 Trochodendron aralioides HOM05D007892 ORTHO05D009211 2.0e-19 101.7 568 29.4
FAN16G1540 Fragaria x ananassa HOM05D007892 ORTHO05D009211 3.5e-19 100.9 559 30.4
RcHm_v2.0_Chr5g0032741 Rosa chinensis HOM05D007892 ORTHO05D009211 3.5e-19 100.9 413 29.1
Lj3g0007189 Lotus japonicus HOM05D007892 ORTHO05D009211 3.0e-18 97.8 555 26.5
QL08p022727 Quercus lobata HOM05D007892 ORTHO05D009211 3.0e-18 97.8 608 27.8
Duzib268G0896 Durio zibethinus HOM05D007892 ORTHO05D009211 3.9e-18 97.4 651 27.8
Ca_03530_v3 Cicer arietinum L. HOM05D007892 ORTHO05D009211 1.9e-17 95.1 616 28.6
Ciclev10007798m.g Citrus clementina HOM05D007892 ORTHO05D009211 3.3e-17 94.4 431 29.2
Glyma.13G273900 Glycine max HOM05D007892 ORTHO05D009211 7.3e-17 93.2 544 26.5
Rhsim06G0202400 Rhododendron simsii HOM05D007892 ORTHO05D009211 9.5e-17 92.8 480 29.6
VMungo0331G1677 Vigna mungo HOM05D007892 ORTHO05D009211 1.2e-16 92.4 534 28.5
Gohir.D01G048000 Gossypium hirsutum HOM05D007892 ORTHO05D009211 4.0e-15 87.4 584 28.3
Glyma.12G226900 Glycine max HOM05D007892 ORTHO05D009211 6.8e-15 86.7 537 27.7
COL.COLO4_36713 Corchorus olitorius HOM05D007892 ORTHO05D009211 1.5e-14 85.5 592 27.5
Medtr2g078660 Medicago truncatula HOM05D007892 ORTHO05D009211 9.8e-14 82.8 484 27.3
Phvul.010G112300 Phaseolus vulgaris HOM05D007892 ORTHO05D009211 9.8e-14 82.8 469 27.7
Lalb_Chr01g0016751 Lupinus albus HOM05D007892 ORTHO05D009211 2.9e-13 81.3 626 29.4
Nn1g06449 Nelumbo nucifera HOM05D007892 ORTHO05D009211 2.9e-13 81.3 536 27.8
arahy.Tifrunner.gnm1.ann1.8Q202K Arachis hypogaea HOM05D007892 ORTHO05D009211 3.2e-12 77.8 561 26.2
Manes.15G089300 Manihot esculenta HOM05D007892 ORTHO05D009211 1.6e-11 75.5 548 25.7
Actinidia09702 Actinidia chinensis HOM05D007892 ORTHO05D009211 3.5e-11 74.3 434 28.8
Gohir.A01G061400 Gossypium hirsutum HOM05D007892 ORTHO05D009211 3.5e-11 74.3 565 27.4
Duzib244G0002 Durio zibethinus HOM05D007892 ORTHO05D009211 4.6e-11 73.9 651 26.6
Psat0s3104g0160 Pisum sativum HOM05D007892 ORTHO05D009211 1.3e-10 72.4 483 26.1
Potri.011G115900 Populus trichocarpa HOM05D007892 ORTHO05D009211 3.9e-10 70.9 573 26.0
AUR62019468 Chenopodium quinoa HOM05D007892 ORTHO05D009211 3.3e-09 67.8 437 27.5
Solyc07g062920.4 Solanum lycopersicum HOM05D021138 ORTHO05D009211 4.7e-08 63.9 567 26.8
Cc05_g11770 Coffea canephora HOM05D007892 ORTHO05D009211 8.1e-08 63.2 514 26.5
HanXRQChr11g0351991 Helianthus annuus HOM05D007892 ORTHO05D009211 1.4e-07 62.4 471 26.1
PGSC0003DMG403012406 Solanum tuberosum HOM05D021138 ORTHO05D009211 1.4e-07 62.4 576 26.7
Nitab4.5_0002330g0130 Nicotiana tabacum HOM05D021138 ORTHO05D009211 2.3e-07 61.6 552 28.6
vmacro11887 Vaccinium macrocarpon HOM05D007892 ORTHO05D009211 4.0e-07 60.8 473 27.7
Sabra11G0101600 Salix brachista HOM05D007892 ORTHO05D009211 6.8e-07 60.1 643 25.0
AUR62036164 Chenopodium quinoa HOM05D007892 ORTHO05D009211 8.9e-07 59.7 448 25.0
Sc03g0010140 Simmondsia chinensis HOM05D007892 ORTHO05D009211 1.5e-06 58.9 463 26.1
Sopen07g031110 Solanum pennellii HOM05D021138 ORTHO05D009211 3.4e-06 57.8 540 26.1
Nitab4.5_0005017g0030 Nicotiana tabacum HOM05D021138 ORTHO05D009211 9.8e-06 56.2 544 27.0


User provided reference genes

Program Settings