Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C025600.2 Cucumis melo HOM05D007784 ORTHO05D008654 2.8e-106 389.0 260 100.0
ClCG11G017920 Citrullus lanatus HOM05D007784 ORTHO05D008654 6.4e-87 324.7 258 81.8
CsaV3_4G033550 Cucumis sativus L. HOM05D007784 ORTHO05D008654 3.3e-83 312.4 260 88.8
QL08p022546 Quercus lobata HOM05D007784 ORTHO05D008654 6.1e-37 158.7 246 50.8
Cfa020564 Carpinus fangiana HOM05D007784 ORTHO05D008654 6.3e-34 148.7 251 44.6
MD03G1230800 Malus domestica HOM05D007784 ORTHO05D008654 1.8e-33 147.1 248 46.8
Prupe.4G177000 Prunus persica HOM05D007784 ORTHO05D008654 1.8e-33 147.1 246 46.7
Duzib213G0720 Durio zibethinus HOM05D007784 ORTHO05D008654 2.9e-31 139.8 247 47.4
Thecc.07G095100 Theobroma cacao HOM05D007784 ORTHO05D008654 1.1e-30 137.9 247 47.4
COL.COLO4_36703 Corchorus olitorius HOM05D007784 ORTHO05D008654 8.9e-28 128.3 252 44.4
Duzib268G0159 Durio zibethinus HOM05D007784 ORTHO05D008654 8.9e-28 128.3 246 45.1
RcHm_v2.0_Chr5g0032821 Rosa chinensis HOM05D007784 ORTHO05D008654 8.9e-28 128.3 248 52.0
Gohir.A01G061700 Gossypium hirsutum HOM05D007784 ORTHO05D008654 1.2e-27 127.9 241 47.3
Gohir.D01G048300 Gossypium hirsutum HOM05D007784 ORTHO05D008654 1.2e-27 127.9 241 47.3
Gorai.002G068100 Gossypium raimondii HOM05D007784 ORTHO05D008654 1.2e-27 127.9 241 47.3
Cpa.g.c36086 Carica papaya HOM05D007784 ORTHO05D008654 2.0e-27 127.1 253 46.2
CiPaw.11G171500 Carya illinoinensis HOM05D007784 ORTHO05D008654 3.4e-27 126.3 245 43.7
Potri.001G398000 Populus trichocarpa HOM05D007784 ORTHO05D008654 4.4e-27 125.9 259 44.8
Potri.011G116600 Populus trichocarpa HOM05D007784 ORTHO05D008654 1.7e-26 124.0 244 46.3
Sabra11G0102100 Salix brachista HOM05D007784 ORTHO05D008654 1.7e-26 124.0 257 45.9
CSS0002410 Camellia sinensis var. sinensis HOM05D007784 ORTHO05D008654 2.2e-26 123.6 241 46.5
CiPaw.12G119800 Carya illinoinensis HOM05D007784 ORTHO05D008654 1.8e-25 120.6 240 42.5
Hma1.2p1_0387F.1_g141980 Hydrangea macrophylla HOM05D007784 ORTHO05D008654 2.4e-25 120.2 242 36.8
FAN16G2579 Fragaria x ananassa HOM05D007784 ORTHO05D008654 4.1e-25 119.4 241 53.1
Sabra16G0260800 Salix brachista HOM05D007784 ORTHO05D008654 4.1e-25 119.4 248 44.8
Haze_09448 Corylus avellana HOM05D007784 ORTHO05D008654 1.0e-23 114.8 86 73.3
CANSAT56G4083 Cannabis sativa HOM05D007784 ORTHO05D008654 5.0e-23 112.5 271 50.9
PGR031G1623 Punica granatum HOM05D007784 ORTHO05D008654 8.6e-23 111.7 253 43.9
Psat4g131560 Pisum sativum HOM05D007784 ORTHO05D008654 1.5e-22 110.9 249 34.5
Ciclev10010505m.g Citrus clementina HOM05D007784 ORTHO05D008654 4.3e-22 109.4 246 39.0
Cc05_g11830 Coffea canephora HOM05D007784 ORTHO05D008654 4.3e-22 109.4 258 45.3
Ca_23050_v3 Cicer arietinum L. HOM05D007784 ORTHO05D008654 1.2e-21 107.8 235 46.4
Manes.15G088900 Manihot esculenta HOM05D007784 ORTHO05D008654 1.6e-21 107.5 252 44.4
FvH4_3g19630 Fragaria vesca HOM05D007784 ORTHO05D008654 2.8e-21 106.7 248 43.5
FAN11G2265 Fragaria x ananassa HOM05D007784 ORTHO05D008654 2.8e-21 106.7 248 43.5
FAN21G3158 Fragaria x ananassa HOM05D007784 ORTHO05D008654 2.8e-21 106.7 249 43.4
FAN25G3654 Fragaria x ananassa HOM05D007784 ORTHO05D008654 4.7e-21 105.9 248 44.4
Glyma.12G163035 Glycine max HOM05D007784 ORTHO05D008654 6.8e-20 102.1 233 48.9
Lalb_Chr03g0030731 Lupinus albus HOM05D007784 ORTHO05D008654 8.9e-20 101.7 245 45.7
Manes.03G106700 Manihot esculenta HOM05D007784 ORTHO05D008654 3.4e-19 99.8 246 40.7
Rhsim06G0201400 Rhododendron simsii HOM05D007784 ORTHO05D008654 4.4e-19 99.4 258 39.1
VMungo1127G1039 Vigna mungo HOM05D007784 ORTHO05D008654 5.8e-19 99.0 235 46.0
Sed0023140 Sechium edule HOM05D007784 ORTHO05D008654 9.8e-19 98.2 56 87.5
CAN.G162.41 Capsicum annuum HOM05D007784 ORTHO05D008654 3.7e-18 96.3 253 37.2
TWI38G0880 Tripterygium wilfordii HOM05D007784 ORTHO05D008654 3.7e-18 96.3 243 40.7
Lj3g0015921 Lotus japonicus HOM05D007784 ORTHO05D008654 6.4e-18 95.5 242 43.8
Gohir.D13G151926 Gossypium hirsutum HOM05D007784 ORTHO05D008654 1.4e-17 94.4 254 42.1
Peaxi162Scf00069g01710 Petunia axillaris HOM05D007784 ORTHO05D008654 1.4e-17 94.4 197 38.1
MSTRG.15239 Avicennia marina HOM05D007784 ORTHO05D008654 2.4e-17 93.6 243 41.2
Glyma.06G238300 Glycine max HOM05D007784 ORTHO05D008654 4.1e-17 92.8 233 48.5
Phvul.011G165000 Phaseolus vulgaris HOM05D007784 ORTHO05D008654 4.1e-17 92.8 232 45.7
Atru.chr2.2433 Acer truncatum HOM05D007784 ORTHO05D008654 7.0e-17 92.0 261 47.9
Oeu051079.1 Olea europaea HOM05D007784 ORTHO05D008654 7.8e-16 88.6 240 39.6
Actinidia09697 Actinidia chinensis HOM05D007784 ORTHO05D008654 8.6e-15 85.1 243 38.7
PGSC0003DMG400012442 Solanum tuberosum HOM05D007784 ORTHO05D008654 2.5e-14 83.6 249 32.5
Dinv14932 Davidia involucrata HOM05D007784 ORTHO05D008654 3.3e-14 83.2 93 54.8
AL3G27640 Arabidopsis lyrata HOM05D009851 ORTHO05D008654 4.3e-14 82.8 236 32.6
Gorai.013G169700 Gossypium raimondii HOM05D007784 ORTHO05D008654 2.8e-13 80.1 191 47.6
Duzib170G0657 Durio zibethinus HOM05D007784 ORTHO05D008654 3.6e-13 79.7 77 61.0
Solyc07g062960.1 Solanum lycopersicum HOM05D007784 ORTHO05D008654 1.4e-12 77.8 229 32.8
Medtr0598s0020 Medicago truncatula HOM05D007784 ORTHO05D008654 2.3e-12 77.0 176 41.5
TPR.G18874 Trifolium pratense HOM05D007784 ORTHO05D008654 2.3e-12 77.0 180 40.6
Sc16g0007130 Simmondsia chinensis HOM05D007784 ORTHO05D008654 3.1e-12 76.6 238 40.8
TAR627G0444 Trochodendron aralioides HOM05D007784 ORTHO05D008654 2.0e-11 73.9 266 38.7
Aqoxy5G00008 Aquilegia oxysepala HOM05D007784 ORTHO05D008654 2.6e-11 73.6 222 37.4
TAR627G0175 Trochodendron aralioides HOM05D007784 ORTHO05D008654 2.6e-11 73.6 266 35.7
Aqoxy1G02344 Aquilegia oxysepala HOM05D007784 ORTHO05D008654 4.4e-11 72.8 222 36.9
Carub.0003s1490 Capsella rubella HOM05D009851 ORTHO05D008654 4.4e-11 72.8 223 36.3
Lalb_Chr01g0006591 Lupinus albus HOM05D007784 ORTHO05D008654 5.8e-11 72.4 218 38.5
DCAR_017127 Daucus carota HOM05D007784 ORTHO05D008654 1.3e-10 71.2 227 35.7
CARHR090230 Cardamine hirsuta HOM05D009851 ORTHO05D008654 1.7e-10 70.9 225 31.6
AT3G15250 Arabidopsis thaliana HOM05D009851 ORTHO05D008654 2.2e-10 70.5 243 30.9
SalBow8G3696 Salvia bowleyana HOM05D007784 ORTHO05D008654 3.7e-10 69.7 96 46.9
EL10Ac4g08222 Beta vulgaris HOM05D007784 ORTHO05D008654 6.4e-10 68.9 265 41.1
Sopen07g031150 Solanum pennellii HOM05D007784 ORTHO05D008654 6.4e-10 68.9 221 31.7
A06p01160 Brassica napus HOM05D009851 ORTHO05D008654 1.9e-09 67.4 252 34.1
BcaC08g43508 Brassica carinata HOM05D009851 ORTHO05D008654 2.4e-09 67.0 250 32.8
C06p08940 Brassica napus HOM05D009851 ORTHO05D008654 2.4e-09 67.0 250 32.8
BolC6t35972H Brassica oleracea HOM05D009851 ORTHO05D008654 2.4e-09 67.0 250 32.8
BraA06t23343Z Brassica rapa HOM05D009851 ORTHO05D008654 2.4e-09 67.0 252 33.7
THA.LOC104810461 Tarenaya hassleriana HOM05D009851 ORTHO05D008654 2.4e-09 67.0 247 33.6
PGR083G0236 Punica granatum HOM05D007784 ORTHO05D008654 4.1e-09 66.2 239 30.1
AL1G61530 Arabidopsis lyrata HOM05D009851 ORTHO05D008654 5.4e-09 65.9 292 28.4
Ah.06g184500 Amaranthus hybridus HOM05D007784 ORTHO05D008654 9.2e-09 65.1 253 36.8
AUR62036175 Chenopodium quinoa HOM05D007784 ORTHO05D008654 9.2e-09 65.1 246 30.1
AT1G53163 Arabidopsis thaliana HOM05D009851 ORTHO05D008654 2.1e-08 63.9 306 30.7
BcaB03g11679 Brassica carinata HOM05D009851 ORTHO05D008654 4.6e-08 62.8 69 53.6
BcaB06g29548 Brassica carinata HOM05D009851 ORTHO05D008654 4.6e-08 62.8 220 36.8
Migut.M00785 Erythranthe guttata HOM05D007784 ORTHO05D008654 4.6e-08 62.8 238 36.6
ECA234G3343 Erigeron canadensis HOM05D007784 ORTHO05D008654 6.0e-08 62.4 218 35.8
PSO541G4378 Papaver somniferum HOM05D007784 ORTHO05D008654 6.0e-08 62.4 225 36.0
Nn1g06458 Nelumbo nucifera HOM05D007784 ORTHO05D008654 7.8e-08 62.0 238 29.8
Sp1g39710 Schrenkiella parvula HOM05D009851 ORTHO05D008654 7.8e-08 62.0 295 32.2
BcaB07g33353 Brassica carinata HOM05D009851 ORTHO05D008654 1.0e-07 61.6 272 33.5
Carub.0001s4232 Capsella rubella HOM05D009851 ORTHO05D008654 1.3e-07 61.2 293 28.0
Thhalv10012165m.g Eutrema salsugineum HOM05D009851 ORTHO05D008654 1.7e-07 60.8 69 50.7
Thhalv10021913m.g Eutrema salsugineum HOM05D009851 ORTHO05D008654 3.9e-07 59.7 85 47.1
C05p51990 Brassica napus HOM05D009851 ORTHO05D008654 1.1e-06 58.2 213 38.5
Sp3g13450 Schrenkiella parvula HOM05D009851 ORTHO05D008654 1.5e-06 57.8 218 31.2
BolC5t33884H Brassica oleracea HOM05D009851 ORTHO05D008654 1.9e-06 57.4 213 39.0
Actinidia12799 Actinidia chinensis HOM05D000223 ORTHO05D000736 2.5e-06 57.0 149 46.3
CARHR043380 Cardamine hirsuta HOM05D009851 ORTHO05D008654 3.3e-06 56.6 269 28.3
AUR62019455 Chenopodium quinoa HOM05D007784 ORTHO05D008654 5.6e-06 55.8 269 37.2


User provided reference genes

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