Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C025588.2 Cucumis melo HOM05D007535 ORTHO05D008520 2.2e-254 882.1 538 100.0
CsaV3_1G015090 Cucumis sativus L. HOM05D007535 ORTHO05D008520 1.1e-117 427.9 547 57.8
ClCG01G011770 Citrullus lanatus HOM05D007535 ORTHO05D008520 2.3e-99 367.1 547 46.6
Sed0017293 Sechium edule HOM05D007535 ORTHO05D008520 3.3e-69 266.9 540 39.3
Thecc.09G278200 Theobroma cacao HOM05D007535 ORTHO05D008520 4.1e-51 206.8 359 42.9
Rhsim13G0113500 Rhododendron simsii HOM05D000001 ORTHO05D000003 1.2e-50 205.3 567 32.6
Haze_23344 Corylus avellana HOM05D007535 ORTHO05D008520 5.5e-48 196.4 349 39.5
Aqoxy4G02717 Aquilegia oxysepala HOM05D007535 ORTHO05D008520 1.6e-47 194.9 543 31.9
Cpa.g.sc195.29 Carica papaya HOM05D007535 ORTHO05D008520 4.6e-47 193.4 432 34.5
CSS0035480 Camellia sinensis var. sinensis HOM05D007535 ORTHO05D008520 6.1e-47 193.0 372 39.2
Hund18777 Selenicereus undatus HOM05D007535 ORTHO05D008520 3.0e-46 190.7 355 36.6
vmacro03328 Vaccinium macrocarpon HOM05D007535 ORTHO05D008520 8.7e-46 189.1 540 38.5
Lalb_Chr24g0393491 Lupinus albus HOM05D007535 ORTHO05D008520 3.4e-42 177.2 342 37.7
EL10Ac7g16124 Beta vulgaris HOM05D007535 ORTHO05D008520 1.1e-40 172.2 352 38.1
Duzib150G0908 Durio zibethinus HOM05D007535 ORTHO05D008520 1.2e-39 168.7 261 42.9
AUR62001527 Chenopodium quinoa HOM05D007535 ORTHO05D008520 2.7e-39 167.5 366 34.2
Gohir.A08G006800 Gossypium hirsutum HOM05D007535 ORTHO05D008520 1.4e-38 165.2 338 36.4
Sc12g0004620 Simmondsia chinensis HOM05D007535 ORTHO05D008520 2.3e-38 164.5 347 36.0
Hma1.2p1_2164F.1_g315740 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 5.1e-38 163.3 313 37.7
arahy.Tifrunner.gnm1.ann1.TGP3GH Arachis hypogaea HOM05D007535 ORTHO05D008520 6.7e-38 162.9 369 33.6
Dinv08923 Davidia involucrata HOM05D007535 ORTHO05D008520 6.7e-38 162.9 544 36.2
Lj3g0000707 Lotus japonicus HOM05D007535 ORTHO05D008520 2.0e-37 161.4 349 37.0
Gorai.004G011300 Gossypium raimondii HOM05D007535 ORTHO05D008520 2.5e-37 161.0 338 34.3
Sc12g0004670 Simmondsia chinensis HOM05D007535 ORTHO05D008520 9.7e-37 159.1 343 35.9
Gohir.D08G017000 Gossypium hirsutum HOM05D007535 ORTHO05D008520 5.3e-35 153.3 345 33.6
Manes.04G001100 Manihot esculenta HOM05D007535 ORTHO05D008520 5.3e-35 153.3 361 34.6
Actinidia24230 Actinidia chinensis HOM05D007535 ORTHO05D008520 1.5e-34 151.8 181 51.4
ECA238G4833 Erigeron canadensis HOM05D007535 ORTHO05D008520 2.6e-34 151.0 122 63.9
HPP92_011495 Vanilla planifolia HOM05D007535 ORTHO05D008520 1.3e-33 148.7 332 33.1
Prupe.6G137100 Prunus persica HOM05D007535 ORTHO05D008520 5.0e-33 146.7 569 27.4
Psat5g257880 Pisum sativum HOM05D007535 ORTHO05D008520 5.5e-32 143.3 350 35.1
FAN16G1906 Fragaria x ananassa HOM05D007535 ORTHO05D008520 9.4e-32 142.5 418 31.3
Actinidia07260 Actinidia chinensis HOM05D007535 ORTHO05D008520 6.1e-31 139.8 370 31.4
FAN21G0330 Fragaria x ananassa HOM05D007535 ORTHO05D008520 4.4e-29 133.7 538 29.0
Hma1.2p1_2164F.1_g315730 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 9.7e-29 132.5 294 34.7
AUR62020256 Chenopodium quinoa HOM05D007535 ORTHO05D008520 1.3e-28 132.1 104 64.4
PSO339G0294 Papaver somniferum HOM05D007535 ORTHO05D008520 4.8e-28 130.2 543 27.3
Lj2A969T70 Lonicera japonica HOM05D007535 ORTHO05D008520 1.1e-27 129.0 568 33.1
Cfa009985 Carpinus fangiana HOM05D007535 ORTHO05D008520 1.4e-27 128.6 342 31.9
QL01p011831 Quercus lobata HOM05D007535 ORTHO05D008520 1.2e-26 125.6 414 28.5
Sabra04G0134300 Salix brachista HOM05D001716 ORTHO05D004234 2.6e-26 124.4 349 33.2
PSO384G1635 Papaver somniferum HOM05D007535 ORTHO05D008520 3.5e-26 124.0 542 26.6
Atru.chr3.3166 Acer truncatum HOM05D007535 ORTHO05D008520 1.3e-25 122.1 275 36.7
GSVIVG01036079001 Vitis vinifera HOM05D007535 ORTHO05D008520 3.8e-25 120.6 276 33.7
Ciclev10029981m.g Citrus clementina HOM05D007535 ORTHO05D008520 1.1e-24 119.0 349 33.0
RcHm_v2.0_Chr5g0046091 Rosa chinensis HOM05D007535 ORTHO05D008520 2.5e-24 117.9 330 30.3
Nitab4.5_0008177g0030 Nicotiana tabacum HOM05D007535 ORTHO05D008520 3.2e-24 117.5 285 35.1
DCAR_024892 Daucus carota HOM05D007535 ORTHO05D008520 9.4e-24 115.9 349 29.8
Cc00_g20950 Coffea canephora HOM05D007535 ORTHO05D008520 1.6e-23 115.2 277 32.9
Ciclev10028368m.g Citrus clementina HOM05D007535 ORTHO05D008520 1.4e-22 112.1 282 34.4
Nitab4.5_0000731g0020 Nicotiana tabacum HOM05D007535 ORTHO05D008520 1.4e-22 112.1 272 33.1
Nn6g34805 Nelumbo nucifera HOM05D007535 ORTHO05D008520 6.7e-22 109.8 336 29.8
FAN11G3206 Fragaria x ananassa HOM05D007535 ORTHO05D008520 1.1e-21 109.0 264 34.1
FvH4_3g25730 Fragaria vesca HOM05D007535 ORTHO05D008520 1.5e-21 108.6 264 31.8
SGA_v2.0_scaffold177G39436 Striga asiatica HOM05D007535 ORTHO05D008520 3.3e-21 107.5 340 30.9
PGSC0003DMG400026347 Solanum tuberosum HOM05D007535 ORTHO05D008520 5.7e-21 106.7 313 31.0
FAN25G3072 Fragaria x ananassa HOM05D007535 ORTHO05D008520 1.3e-20 105.5 263 31.6
Sopen11g027410 Solanum pennellii HOM05D007535 ORTHO05D008520 1.4e-19 102.1 319 30.1
ATR0081G029 Amborella trichopoda HOM05D007535 ORTHO05D008520 2.4e-19 101.3 121 45.5
Solyc11g068690.2 Solanum lycopersicum HOM05D007535 ORTHO05D008520 4.1e-19 100.5 319 30.4
Medtr2g086950 Medicago truncatula HOM05D007535 ORTHO05D008520 7.0e-19 99.8 288 30.2
Glyma.12G186700 Glycine max HOM05D007535 ORTHO05D008520 9.1e-19 99.4 278 30.2
MD03G1150100 Malus domestica HOM05D007535 ORTHO05D008520 1.2e-18 99.0 351 28.5
Potri.004G199200 Populus trichocarpa HOM05D007535 ORTHO05D008520 3.5e-18 97.4 343 29.2
PGR119G1786 Punica granatum HOM05D007535 ORTHO05D008520 7.7e-18 96.3 270 31.1
Peaxi162Scf00224g00216 Petunia axillaris HOM05D007535 ORTHO05D008520 1.3e-17 95.5 293 32.1
VMungo1080G1542 Vigna mungo HOM05D007535 ORTHO05D008520 1.7e-17 95.1 358 29.9
TPR.G4567 Trifolium pratense HOM05D007535 ORTHO05D008520 3.8e-17 94.0 340 36.2
TWI79G0866 Tripterygium wilfordii HOM05D007535 ORTHO05D008520 3.8e-17 94.0 368 28.5
CAN.G745.17 Capsicum annuum HOM05D007535 ORTHO05D008520 6.5e-17 93.2 349 29.2
TAR633G1755 Trochodendron aralioides HOM05D007535 ORTHO05D008520 6.5e-17 93.2 350 28.6
Os01g0966400 Oryza sativa ssp. japonica HOM05D007535 ORTHO05D008520 1.1e-16 92.4 348 27.3
Glyma.13G314800 Glycine max HOM05D007535 ORTHO05D008520 2.5e-16 91.3 274 32.8
MD11G1168900 Malus domestica HOM05D007535 ORTHO05D008520 1.2e-15 89.0 225 33.8
Migut.N02473 Erythranthe guttata HOM05D007535 ORTHO05D008520 3.6e-15 87.4 270 28.1
unitig_27.g25117 Utricularia gibba HOM05D007535 ORTHO05D008520 8.0e-15 86.3 288 27.1
arahy.Tifrunner.gnm1.ann1.ETK20Z Arachis hypogaea HOM05D007535 ORTHO05D008520 5.2e-14 83.6 361 24.9
MBI17_g01489_MAGBIO Magnolia biondii HOM05D007535 ORTHO05D008520 6.8e-14 83.2 336 25.3
Ciclev10028316m.g Citrus clementina HOM05D007535 ORTHO05D008520 1.2e-13 82.4 293 31.1
CiPaw.14G097800 Carya illinoinensis HOM05D007535 ORTHO05D008520 3.4e-13 80.9 228 30.7
THA.LOC104810927 Tarenaya hassleriana HOM05D007535 ORTHO05D008520 4.4e-13 80.5 273 35.2
Eucgr.J00525 Eucalyptus grandis HOM05D007535 ORTHO05D008520 9.8e-13 79.3 270 28.9
CANSAT54G2250 Cannabis sativa HOM05D007535 ORTHO05D008520 1.3e-12 79.0 279 32.3
Lsat_1_v5_gn_2_34620 Lactuca sativa HOM05D007535 ORTHO05D008520 1.7e-12 78.6 168 34.5
Ca_01647_v3 Cicer arietinum L. HOM05D002184 ORTHO05D002379 4.8e-12 77.0 275 29.5
Carub.0006s2006 Capsella rubella HOM05D012474 ORTHO05D008520 4.1e-11 73.9 105 41.9
C09p54330 Brassica napus HOM05D012474 ORTHO05D008520 7.0e-11 73.2 68 52.9
BolC9t58300H Brassica oleracea HOM05D012474 ORTHO05D008520 7.0e-11 73.2 68 52.9
BcaC04g19565 Brassica carinata HOM05D012474 ORTHO05D008520 1.2e-10 72.4 68 52.9
AL6G33340 Arabidopsis lyrata HOM05D012474 ORTHO05D008520 2.7e-10 71.2 90 44.4
HanXRQChr14g0433121 Helianthus annuus HOM05D007535 ORTHO05D008520 1.0e-09 69.3 263 28.9
Zm00001eb140080 Zea mays HOM05D007535 ORTHO05D008520 1.0e-09 69.3 369 25.5
PRCOL_00004573 Prasinoderma coloniale HOM05D007535 ORTHO05D008520 2.2e-09 68.2 109 36.7
CARHR191220 Cardamine hirsuta HOM05D012474 ORTHO05D008520 5.0e-09 67.0 105 41.9
C09p54250 Brassica napus HOM05D012474 ORTHO05D008520 1.1e-08 65.9 278 35.6
SalBow3G0383 Salvia bowleyana HOM05D007535 ORTHO05D008520 9.5e-08 62.8 289 26.6
Aa31LG1G13230 Aethionema arabicum HOM05D012474 ORTHO05D008520 2.7e-07 61.2 261 33.7
CDE02G4009 Ceratophyllum demersum HOM05D007535 ORTHO05D008520 2.7e-07 61.2 276 26.1
Phvul.005G122000 Phaseolus vulgaris HOM05D007535 ORTHO05D008520 1.8e-06 58.5 51 58.8
Nitab4.5_0001640g0010 Nicotiana tabacum HOM05D007535 ORTHO05D008520 3.0e-06 57.8 154 30.5
A10p18500 Brassica napus HOM05D012474 ORTHO05D008520 6.8e-06 56.6 56 48.2
BraA10t43930Z Brassica rapa HOM05D012474 ORTHO05D008520 6.8e-06 56.6 56 48.2
Os03g0221800 Oryza sativa ssp. japonica HOM05D004562 ORTHO05D005435 8.8e-06 56.2 125 34.4


User provided reference genes

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