Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C025537.2 Cucumis melo HOM05D003718 ORTHO05D004402 0.0e+00 1449.1 754 100.0
CsaV3_1G015830 Cucumis sativus L. HOM05D003718 ORTHO05D004402 0.0e+00 1288.1 692 95.8
Sed0001928 Sechium edule HOM05D003718 ORTHO05D004402 0.0e+00 1148.7 692 86.0
ClCG03G002590 Citrullus lanatus HOM05D003718 ORTHO05D004402 0.0e+00 1109.4 692 84.1
CiPaw.03G266000 Carya illinoinensis HOM05D003718 ORTHO05D004402 9.0e-299 1030.0 693 74.7
QL09p039591 Quercus lobata HOM05D003718 ORTHO05D004402 4.6e-295 1017.7 712 73.0
Cfa013046 Carpinus fangiana HOM05D003718 ORTHO05D004402 2.8e-292 1008.4 693 73.9
Dinv34637 Davidia involucrata HOM05D003718 ORTHO05D004402 3.1e-291 1005.0 693 73.0
CiPaw.04G187700 Carya illinoinensis HOM05D003718 ORTHO05D004402 6.5e-289 997.3 693 72.7
Thecc.01G255900 Theobroma cacao HOM05D003718 ORTHO05D004402 3.9e-286 988.0 693 71.6
Actinidia07305 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.3e-284 983.0 693 72.9
Duzib211G0290 Durio zibethinus HOM05D003718 ORTHO05D004402 2.2e-284 982.2 693 70.9
Atru.chr5.1725 Acer truncatum HOM05D003718 ORTHO05D004402 6.9e-283 977.2 693 72.0
CSS0049010 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 2.0e-282 975.7 693 72.9
GSVIVG01028357001 Vitis vinifera HOM05D003718 ORTHO05D004402 7.7e-282 973.8 717 70.9
Eucgr.K03255 Eucalyptus grandis HOM05D003718 ORTHO05D004402 1.3e-281 973.0 727 69.6
CSS0040480 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 2.2e-281 972.2 693 72.4
Hma1.2p1_0273F.1_g109540 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 3.8e-281 971.5 694 72.3
Gorai.007G147600 Gossypium raimondii HOM05D003718 ORTHO05D004402 6.5e-281 970.7 693 71.0
Gorai.001G179000 Gossypium raimondii HOM05D003718 ORTHO05D004402 7.2e-280 967.2 693 70.4
Potri.005G226100 Populus trichocarpa HOM05D003718 ORTHO05D004402 7.2e-280 967.2 696 71.3
CANSAT01G0671 Cannabis sativa HOM05D003718 ORTHO05D004402 2.1e-279 965.7 692 71.4
Gohir.D07G156100 Gossypium hirsutum HOM05D003718 ORTHO05D004402 4.7e-279 964.5 693 70.3
Ciclev10019124m.g Citrus clementina HOM05D003718 ORTHO05D004402 6.1e-279 964.1 693 71.1
Gohir.D11G137575 Gossypium hirsutum HOM05D003718 ORTHO05D004402 7.9e-279 963.8 693 70.6
Duzib133G1085 Durio zibethinus HOM05D003718 ORTHO05D004402 3.9e-278 961.4 693 70.6
TWI12G1081 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 2.6e-277 958.7 694 71.2
Gohir.A07G149800 Gossypium hirsutum HOM05D003718 ORTHO05D004402 1.7e-276 956.1 693 69.7
Gohir.A11G131600 Gossypium hirsutum HOM05D003718 ORTHO05D004402 1.7e-276 956.1 693 70.3
MD05G1194900 Malus domestica HOM05D003718 ORTHO05D004402 2.2e-276 955.7 692 70.4
Prupe.8G221600 Prunus persica HOM05D003718 ORTHO05D004402 2.2e-276 955.7 691 71.1
Manes.13G035300 Manihot esculenta HOM05D003718 ORTHO05D004402 2.8e-276 955.3 698 70.9
Manes.12G033700 Manihot esculenta HOM05D003718 ORTHO05D004402 3.7e-276 954.9 698 69.5
Potri.002G036600 Populus trichocarpa HOM05D003718 ORTHO05D004402 3.7e-276 954.9 696 70.8
TWI75G1389 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 4.8e-276 954.5 695 70.9
Glyma.03G164400 Glycine max HOM05D003718 ORTHO05D004402 2.4e-275 952.2 692 70.1
TAR362G0778 Trochodendron aralioides HOM05D003718 ORTHO05D004402 3.1e-275 951.8 696 71.3
TAR633G0796 Trochodendron aralioides HOM05D003718 ORTHO05D004402 4.5e-274 948.0 696 70.3
Sabra05G0174600 Salix brachista HOM05D003718 ORTHO05D004402 7.7e-274 947.2 719 68.6
MD10G1181500 Malus domestica HOM05D003718 ORTHO05D004402 3.8e-273 944.9 697 69.9
Glyma.19G165800 Glycine max HOM05D003718 ORTHO05D004402 1.1e-272 943.3 692 69.1
Duzib138G1036 Durio zibethinus HOM05D003718 ORTHO05D004402 1.9e-272 942.6 693 68.8
vmacro14814 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 4.7e-271 937.9 645 74.0
Lalb_Chr02g0152551 Lupinus albus HOM05D003718 ORTHO05D004402 1.8e-270 936.0 698 68.3
Phvul.001G162000 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 5.2e-270 934.5 692 68.9
Sabra02G0029600 Salix brachista HOM05D003718 ORTHO05D004402 4.8e-268 927.9 732 66.9
VMungo1383G2169 Vigna mungo HOM05D003718 ORTHO05D004402 3.5e-266 921.8 723 66.0
Nn1g02814 Nelumbo nucifera HOM05D003718 ORTHO05D004402 1.3e-265 919.8 695 68.5
Lj5g0026512 Lotus japonicus HOM05D003718 ORTHO05D004402 2.5e-264 915.6 684 68.6
RcHm_v2.0_Chr6g0287811 Rosa chinensis HOM05D003718 ORTHO05D004402 4.2e-264 914.8 691 69.2
FvH4_2g21250 Fragaria vesca HOM05D003718 ORTHO05D004402 6.1e-263 911.0 691 68.2
Cc01_g18200 Coffea canephora HOM05D003718 ORTHO05D004402 2.3e-262 909.1 695 67.5
Lalb_Chr21g0313961 Lupinus albus HOM05D003718 ORTHO05D004402 2.3e-262 909.1 685 67.3
arahy.Tifrunner.gnm1.ann1.FU7SP6 Arachis hypogaea HOM05D003718 ORTHO05D004402 2.6e-261 905.6 705 65.5
Sopen05g027610 Solanum pennellii HOM05D003718 ORTHO05D004402 4.4e-261 904.8 686 67.9
arahy.Tifrunner.gnm1.ann1.QXN52H Arachis hypogaea HOM05D003718 ORTHO05D004402 2.8e-260 902.1 710 65.1
MSTRG.21485 Avicennia marina HOM05D003718 ORTHO05D004402 8.2e-260 900.6 698 65.9
Migut.D00439 Erythranthe guttata HOM05D003718 ORTHO05D004402 8.2e-260 900.6 693 64.9
FAN15G3248 Fragaria x ananassa HOM05D003718 ORTHO05D004402 8.2e-260 900.6 713 65.9
Aqoxy1G01842 Aquilegia oxysepala HOM05D003718 ORTHO05D004402 1.4e-259 899.8 680 67.8
Solyc05g046330.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 1.4e-259 899.8 701 66.5
PGR031G0689 Punica granatum HOM05D003718 ORTHO05D004402 9.1e-259 897.1 678 67.3
Sopen07g005600 Solanum pennellii HOM05D003718 ORTHO05D004402 2.0e-258 896.0 689 66.5
FAN24G2691 Fragaria x ananassa HOM05D003718 ORTHO05D004402 4.5e-258 894.8 712 66.2
Phvul.007G191800 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 2.9e-257 892.1 693 65.7
Medtr1g069780 Medicago truncatula HOM05D003718 ORTHO05D004402 3.8e-257 891.7 693 66.4
Ca_09672_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 1.5e-256 889.8 711 65.0
THA.LOC104806254 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 4.2e-256 888.3 693 65.2
Psat6g054080 Pisum sativum HOM05D003718 ORTHO05D004402 1.2e-255 886.7 684 66.4
Nn3g19693 Nelumbo nucifera HOM05D003718 ORTHO05D004402 3.6e-255 885.2 695 65.6
CAN.G106.18 Capsicum annuum HOM05D003718 ORTHO05D004402 6.1e-255 884.4 688 67.7
Glyma.10G038000 Glycine max HOM05D003718 ORTHO05D004402 6.1e-255 884.4 662 67.5
THA.LOC104812416 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 8.0e-255 884.0 694 65.0
Peaxi162Scf00320g00717 Petunia axillaris HOM05D003718 ORTHO05D004402 1.4e-254 883.2 693 65.9
FAN27G0576 Fragaria x ananassa HOM05D003718 ORTHO05D004402 6.8e-254 880.9 745 63.2
TPR.G5874 Trifolium pratense HOM05D003718 ORTHO05D004402 6.8e-254 880.9 645 68.7
SalBow4G0483 Salvia bowleyana HOM05D003718 ORTHO05D004402 2.2e-252 875.9 712 63.1
Oeu052043.2 Olea europaea HOM05D003718 ORTHO05D004402 6.3e-252 874.4 809 57.6
AUR62013766 Chenopodium quinoa HOM05D003718 ORTHO05D004402 8.3e-252 874.0 687 65.6
CAN.G54.7 Capsicum annuum HOM05D003718 ORTHO05D004402 7.0e-251 870.9 685 65.3
Sp7g19230 Schrenkiella parvula HOM05D003718 ORTHO05D004402 1.2e-250 870.2 693 64.9
Rhsim01G0262400 Rhododendron simsii HOM05D003718 ORTHO05D004402 2.0e-250 869.4 607 72.2
CARHR227730 Cardamine hirsuta HOM05D003718 ORTHO05D004402 2.7e-250 869.0 693 64.4
arahy.Tifrunner.gnm1.ann1.EWE7BX Arachis hypogaea HOM05D003718 ORTHO05D004402 1.7e-249 866.3 727 62.4
Thhalv10024580m.g Eutrema salsugineum HOM05D003718 ORTHO05D004402 1.7e-249 866.3 693 64.1
ECA236G3831 Erigeron canadensis HOM05D003718 ORTHO05D004402 2.5e-248 862.4 694 64.7
DCAR_000921 Daucus carota HOM05D003718 ORTHO05D004402 9.5e-248 860.5 694 63.8
VMungo0720G0687 Vigna mungo HOM05D003718 ORTHO05D004402 1.6e-247 859.8 686 64.7
arahy.Tifrunner.gnm1.ann1.B1YDGW Arachis hypogaea HOM05D003718 ORTHO05D004402 4.7e-247 858.2 712 62.9
PSO210G5136 Papaver somniferum HOM05D003718 ORTHO05D004402 8.0e-247 857.4 693 64.5
AL7G32970 Arabidopsis lyrata HOM05D003718 ORTHO05D004402 3.0e-246 855.5 693 63.5
AT4G21150 Arabidopsis thaliana HOM05D003718 ORTHO05D004402 7.5e-245 850.9 693 63.2
Solyc07g014700.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 7.5e-245 850.9 651 66.7
PSO832G2930 Papaver somniferum HOM05D003718 ORTHO05D004402 2.2e-244 849.4 693 64.1
Carub.0007s2028 Capsella rubella HOM05D003718 ORTHO05D004402 2.8e-244 849.0 693 62.9
EL10Ac1g00739 Beta vulgaris HOM05D003718 ORTHO05D004402 1.6e-242 843.2 709 62.9
BcaC09g51252 Brassica carinata HOM05D003718 ORTHO05D004402 1.3e-241 840.1 693 62.6
BolC1t01458H Brassica oleracea HOM05D003718 ORTHO05D004402 2.3e-241 839.3 693 62.6
SGA_v2.0_scaffold1G00624 Striga asiatica HOM05D003718 ORTHO05D004402 3.8e-241 838.6 721 61.6
Psat3g056400 Pisum sativum HOM05D003718 ORTHO05D004402 1.9e-240 836.3 692 63.2
TPR.G9204 Trifolium pratense HOM05D003718 ORTHO05D004402 4.3e-240 835.1 711 62.3
Lsat_1_v5_gn_8_92540 Lactuca sativa HOM05D003718 ORTHO05D004402 1.2e-239 833.6 677 62.8
Nitab4.5_0001572g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 8.0e-239 830.9 686 63.3
CDE07G1087 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 1.2e-237 827.0 707 60.5
HanXRQChr04g0110491 Helianthus annuus HOM05D003718 ORTHO05D004402 2.6e-237 825.9 645 65.3
Nitab4.5_0000413g0180 Nicotiana tabacum HOM05D003718 ORTHO05D004402 1.3e-236 823.5 686 63.3
Hund17111 Selenicereus undatus HOM05D003718 ORTHO05D004402 1.2e-234 817.0 664 63.3
SGA_v2.0_scaffold138G35211 Striga asiatica HOM05D003718 ORTHO05D004402 1.2e-234 817.0 798 55.9
BcaNung03839 Brassica carinata HOM05D003718 ORTHO05D004402 2.7e-234 815.8 693 60.9
Rhsim13G0036100 Rhododendron simsii HOM05D003718 ORTHO05D004402 1.0e-233 813.9 614 69.4
BraA03t14340Z Brassica rapa HOM05D003718 ORTHO05D004402 6.6e-233 811.2 710 60.8
CDE04G2599 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 7.3e-232 807.7 693 60.5
COL.COLO4_04023 Corchorus olitorius HOM05D003718 ORTHO05D004402 3.6e-231 805.4 626 65.7
BraA01t01195Z Brassica rapa HOM05D003718 ORTHO05D004402 1.5e-229 800.0 655 62.1
Lj1C68G8 Lonicera japonica HOM05D003718 ORTHO05D004402 1.3e-228 797.0 641 65.8
A01p12510 Brassica napus HOM05D003718 ORTHO05D004402 2.2e-228 796.2 655 61.7
C01p15100 Brassica napus HOM05D003718 ORTHO05D004402 2.9e-228 795.8 654 61.8
ATR0736G006 Amborella trichopoda HOM05D003718 ORTHO05D004402 4.9e-228 795.0 645 63.1
Aa31LG6G3160 Aethionema arabicum HOM05D003718 ORTHO05D004402 8.3e-228 794.3 661 62.0
Ca_08683_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 3.5e-226 788.9 695 61.2
Lsat_1_v5_gn_5_182920 Lactuca sativa HOM05D003718 ORTHO05D004402 2.5e-224 782.7 696 60.6
Os01g0911200 Oryza sativa ssp. japonica HOM05D003718 ORTHO05D004402 9.5e-224 780.8 688 58.3
Zm00001eb143710 Zea mays HOM05D003718 ORTHO05D004402 7.5e-221 771.2 688 57.6
Sc02g0003190 Simmondsia chinensis HOM05D003718 ORTHO05D004402 1.3e-220 770.4 621 63.9
Zm00001eb365020 Zea mays HOM05D003718 ORTHO05D004402 3.7e-220 768.8 692 57.2
Peaxi162Scf00906g00225 Petunia axillaris HOM05D003718 ORTHO05D004402 6.4e-220 768.1 670 61.5
AUR62023389 Chenopodium quinoa HOM05D003718 ORTHO05D004402 1.1e-219 767.3 687 59.8
A03p52670 Brassica napus HOM05D003718 ORTHO05D004402 1.4e-219 766.9 663 60.6
C07p51100 Brassica napus HOM05D003718 ORTHO05D004402 6.0e-218 761.5 663 60.3
BolC7t45610H Brassica oleracea HOM05D003718 ORTHO05D004402 6.0e-218 761.5 663 60.3
HPP92_000351 Vanilla planifolia HOM05D003718 ORTHO05D004402 5.2e-214 748.4 694 57.2
unitig_22.g5287 Utricularia gibba HOM05D003718 ORTHO05D004402 3.4e-213 745.7 709 56.0
BolC3t20629H Brassica oleracea HOM05D003718 ORTHO05D004402 6.2e-207 724.9 736 55.3
C03p83480 Brassica napus HOM05D003718 ORTHO05D004402 9.0e-198 694.5 745 52.6
Cpa.g.sc20.44 Carica papaya HOM05D003718 ORTHO05D004402 2.5e-192 676.4 696 54.7
Nitab4.5_0005411g0050 Nicotiana tabacum HOM05D003718 ORTHO05D004402 2.5e-192 676.4 661 56.3
unitig_8.g3735 Utricularia gibba HOM05D003718 ORTHO05D004402 4.0e-190 669.1 655 55.0
CsaV3_UNG055470 Cucumis sativus L. HOM05D003718 ORTHO05D004402 3.8e-188 662.5 432 81.7
Ah.05g177770 Amaranthus hybridus HOM05D003718 ORTHO05D004402 1.5e-181 640.6 530 62.8
BcaC01g00710 Brassica carinata HOM05D003718 ORTHO05D004402 5.3e-174 615.5 550 59.8
Nitab4.5_0005095g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 2.2e-159 567.0 503 59.6
Actinidia37517 Actinidia chinensis HOM05D003718 ORTHO05D004402 4.5e-149 532.7 564 54.1
Mapoly0028s0115 Marchantia polymorpha HOM05D003718 ORTHO05D004402 5.7e-144 515.8 691 43.3
AUR62043414 Chenopodium quinoa HOM05D003718 ORTHO05D004402 4.4e-128 463.0 356 66.3
Psat0ss9065g0080 Pisum sativum HOM05D003718 ORTHO05D004402 2.6e-112 410.6 443 52.8
vmacro02673 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 5.8e-112 409.5 321 66.7
SEGI_27157 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 8.6e-108 395.6 361 54.8
Haze_21407 Corylus avellana HOM05D003718 ORTHO05D004402 5.8e-104 382.9 308 65.6
HanXRQChr11g0336771 Helianthus annuus HOM05D003718 ORTHO05D004402 6.4e-103 379.4 380 56.8
A08p15230 Brassica napus HOM05D003718 ORTHO05D001664 5.1e-100 369.8 560 41.8
EL10Ac1g02094 Beta vulgaris HOM05D003718 ORTHO05D004402 8.4e-95 352.4 307 57.7
FAN20G1425 Fragaria x ananassa HOM05D003718 ORTHO05D004402 4.6e-93 346.7 327 57.2
AagrBONN_evm.TU.Sc2ySwM_340.234 Anthoceros agrestis HOM05D003718 ORTHO05D004402 3.1e-81 307.4 427 43.1
CsaV3_UNG055460 Cucumis sativus L. HOM05D003718 ORTHO05D004402 8.4e-71 272.7 198 75.8
Hma1.2p1_0576F.1_g181950 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 1.5e-67 261.9 294 54.4
CBR_g32152 Chara braunii HOM05D003718 ORTHO05D004402 2.5e-67 261.2 611 33.1
Pp3c7_6480 Physcomitrium patens HOM05D003718 ORTHO05D004402 2.9e-63 247.7 385 41.0
Psat7g093680 Pisum sativum HOM05D003718 ORTHO05D004402 5.1e-60 236.9 299 45.8
Actinidia09538 Actinidia chinensis HOM05D003718 ORTHO05D004402 8.2e-58 229.6 156 75.6
Actinidia09536 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.3e-55 222.2 262 49.2
HPP92_000418 Vanilla planifolia HOM05D003718 ORTHO05D004402 8.8e-52 209.5 658 28.0
FAN27G1677 Fragaria x ananassa HOM05D003718 ORTHO05D004402 8.2e-50 203.0 187 57.8
SEGI_31370 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 5.9e-48 196.8 221 49.3
SHI09762 Sapria himalayana HOM05D003718 ORTHO05D004402 1.5e-38 165.6 199 49.7
arahy.Tifrunner.gnm1.ann1.S1G2KX Arachis hypogaea HOM05D003718 ORTHO05D004402 1.2e-37 162.5 118 65.3
Actinidia09537 Actinidia chinensis HOM05D003718 ORTHO05D004402 2.4e-33 148.3 163 51.5
Psat6g086960 Pisum sativum HOM05D003718 ORTHO05D004402 2.0e-32 145.2 96 72.9
SMO367G0218 Selaginella moellendorffii HOM05D003718 ORTHO05D004402 1.5e-30 139.0 135 54.1
Actinidia25800 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.0e-28 132.9 195 42.6
Actinidia30158 Actinidia chinensis HOM05D003718 ORTHO05D004402 4.4e-27 127.5 88 68.2
arahy.Tifrunner.gnm1.ann1.6B4W14 Arachis hypogaea HOM05D003718 ORTHO05D004402 1.3e-26 125.9 79 75.9
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 3.7e-26 124.4 80 73.8
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 6.3e-26 123.6 104 63.5
Psat6g087000 Pisum sativum HOM05D003718 ORTHO05D004402 1.7e-18 99.0 67 71.6
Cre08.g368450 Chlamydomonas reinhardtii HOM05D003718 ORTHO05D004402 3.1e-17 94.7 301 29.9
Lsat_1_v5_gn_3_107020 Lactuca sativa HOM05D003718 ORTHO05D004402 9.2e-17 93.2 105 48.6
Actinidia30157 Actinidia chinensis HOM05D003718 ORTHO05D057597 3.5e-16 91.3 88 55.7
Lsat_1_v5_gn_4_881 Lactuca sativa HOM05D003718 ORTHO05D004402 3.5e-16 91.3 153 41.2
arahy.Tifrunner.gnm1.ann1.LM6F6Z Arachis hypogaea HOM05D003718 ORTHO05D004402 7.7e-16 90.1 115 40.9
Lsat_1_v5_gn_9_27880 Lactuca sativa HOM05D003718 ORTHO05D004402 2.3e-12 78.6 179 34.1
Actinidia25801 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.5e-11 75.9 117 40.2
Gohir.A01G185580 Gossypium hirsutum HOM05D003718 ORTHO05D000087 4.1e-09 67.8 46 65.2


User provided reference genes

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