Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C025535.2 Cucumis melo HOM05D004987 ORTHO05D005960 9.3e-245 849.7 418 100.0
CsaV3_1G015810 Cucumis sativus L. HOM05D004987 ORTHO05D005960 6.6e-235 817.0 415 96.9
ClCG01G010690 Citrullus lanatus HOM05D004987 ORTHO05D005960 1.1e-232 809.7 415 95.9
Sed0000076 Sechium edule HOM05D004987 ORTHO05D005960 1.4e-224 782.7 415 92.8
CiPaw.09G105700 Carya illinoinensis HOM05D004987 ORTHO05D005960 5.1e-203 711.1 415 82.4
Haze_06979 Corylus avellana HOM05D004987 ORTHO05D005960 3.3e-202 708.4 418 81.1
CANSAT01G2438 Cannabis sativa HOM05D004987 ORTHO05D005960 6.3e-201 704.1 415 80.7
CiPaw.10G079900 Carya illinoinensis HOM05D004987 ORTHO05D005960 1.4e-200 703.0 415 81.0
Ciclev10015100m.g Citrus clementina HOM05D004987 ORTHO05D005960 1.8e-200 702.6 415 80.2
QL05p068327 Quercus lobata HOM05D004987 ORTHO05D005960 4.5e-199 698.0 418 80.4
QL05p068818 Quercus lobata HOM05D004987 ORTHO05D005960 4.5e-199 698.0 418 80.4
Sc13g0000910 Simmondsia chinensis HOM05D004987 ORTHO05D005960 1.8e-195 686.0 415 77.6
Thecc.06G237200 Theobroma cacao HOM05D004987 ORTHO05D005960 1.8e-195 686.0 415 78.3
Dinv01708 Davidia involucrata HOM05D004987 ORTHO05D005960 4.4e-194 681.4 415 78.3
GSVIVG01007214001 Vitis vinifera HOM05D004987 ORTHO05D005960 4.4e-194 681.4 415 76.9
MD00G1058500 Malus domestica HOM05D004987 ORTHO05D005960 2.2e-193 679.1 415 78.8
Gohir.A06G204500 Gossypium hirsutum HOM05D004987 ORTHO05D005960 2.8e-193 678.7 415 76.6
Duzib235G0100 Durio zibethinus HOM05D004987 ORTHO05D005960 8.2e-193 677.2 415 76.9
Gorai.010G249200 Gossypium raimondii HOM05D004987 ORTHO05D005960 4.1e-192 674.9 415 76.4
Prupe.4G007100 Prunus persica HOM05D004987 ORTHO05D005960 7.0e-192 674.1 415 77.3
Actinidia26840 Actinidia chinensis HOM05D004987 ORTHO05D005960 1.2e-191 673.3 415 77.8
Glyma.07G266900 Glycine max HOM05D004987 ORTHO05D005960 2.0e-191 672.5 415 75.9
TAR626G0553 Trochodendron aralioides HOM05D004987 ORTHO05D005960 2.0e-191 672.5 416 76.4
Potri.006G017000 Populus trichocarpa HOM05D004987 ORTHO05D005960 3.5e-191 671.8 417 74.8
Ah.02g126930 Amaranthus hybridus HOM05D004987 ORTHO05D005960 7.7e-191 670.6 413 76.3
Glyma.17G007300 Glycine max HOM05D004987 ORTHO05D005960 7.7e-191 670.6 415 76.4
TAR627G0360 Trochodendron aralioides HOM05D004987 ORTHO05D005960 1.7e-190 669.5 416 76.4
Gohir.D06G217000 Gossypium hirsutum HOM05D004987 ORTHO05D005960 2.2e-190 669.1 415 75.9
arahy.Tifrunner.gnm1.ann1.158NIU Arachis hypogaea HOM05D004987 ORTHO05D005960 3.8e-190 668.3 419 75.4
arahy.Tifrunner.gnm1.ann1.K2RD5P Arachis hypogaea HOM05D004987 ORTHO05D005960 3.8e-190 668.3 419 75.9
Hma1.2p1_0657F.1_g196910 Hydrangea macrophylla HOM05D004987 ORTHO05D005960 5.0e-190 667.9 415 75.9
VMungo1215G0994 Vigna mungo HOM05D004987 ORTHO05D005960 5.0e-190 667.9 415 75.7
Atru.chr3.1439 Acer truncatum HOM05D004987 ORTHO05D005960 6.5e-190 667.5 415 75.4
Rhsim13G0142900 Rhododendron simsii HOM05D004987 ORTHO05D005960 6.5e-190 667.5 414 76.1
Manes.09G081692 Manihot esculenta HOM05D004987 ORTHO05D005960 1.9e-189 666.0 415 74.7
Phvul.003G085301 Phaseolus vulgaris HOM05D004987 ORTHO05D005960 1.9e-189 666.0 415 75.7
Lj4g0022097 Lotus japonicus HOM05D004987 ORTHO05D005960 3.2e-189 665.2 415 75.7
Lalb_Chr20g0119411 Lupinus albus HOM05D004987 ORTHO05D005960 5.5e-189 664.5 415 74.9
Peaxi162Scf00488g00925 Petunia axillaris HOM05D004987 ORTHO05D005960 5.5e-189 664.5 417 75.1
arahy.Tifrunner.gnm1.ann1.URKQ8K Arachis hypogaea HOM05D004987 ORTHO05D005960 9.4e-189 663.7 431 73.5
ECA248G1395 Erigeron canadensis HOM05D004987 ORTHO05D005960 1.2e-188 663.3 415 74.9
AUR62018393 Chenopodium quinoa HOM05D004987 ORTHO05D005960 3.6e-188 661.8 418 75.4
RcHm_v2.0_Chr5g0000801 Rosa chinensis HOM05D004987 ORTHO05D005960 3.6e-188 661.8 415 77.8
MSTRG.13111 Avicennia marina HOM05D004987 ORTHO05D005960 4.7e-188 661.4 415 75.9
TWI38G0401 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 6.1e-188 661.0 415 74.7
SalBow8G4301 Salvia bowleyana HOM05D004987 ORTHO05D005960 8.0e-188 660.6 415 75.9
FvH4_3g00590 Fragaria vesca HOM05D004987 ORTHO05D005960 1.0e-187 660.2 415 77.3
Nn1g07472 Nelumbo nucifera HOM05D004987 ORTHO05D005960 1.8e-187 659.4 415 74.7
Lj2C259G8 Lonicera japonica HOM05D004987 ORTHO05D005960 6.7e-187 657.5 408 77.5
Ca_15341_v3 Cicer arietinum L. HOM05D004987 ORTHO05D005960 1.2e-186 656.8 415 74.7
Psat5g004720 Pisum sativum HOM05D004987 ORTHO05D005960 1.2e-186 656.8 415 74.2
FAN25G3815 Fragaria x ananassa HOM05D004987 ORTHO05D005960 2.6e-186 655.6 415 76.6
CSS0019037 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 5.7e-186 654.4 415 75.9
CSS0028023 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 5.7e-186 654.4 415 75.9
HanXRQChr01g0004771 Helianthus annuus HOM05D004987 ORTHO05D005960 5.7e-186 654.4 415 74.7
Oeu030104.1 Olea europaea HOM05D004987 ORTHO05D005960 5.7e-186 654.4 415 74.9
Medtr3g117360 Medicago truncatula HOM05D004987 ORTHO05D005960 7.5e-186 654.1 415 74.5
Nitab4.5_0000318g0050 Nicotiana tabacum HOM05D004987 ORTHO05D005960 1.8e-184 649.4 414 73.2
PGSC0003DMG400025463 Solanum tuberosum HOM05D004987 ORTHO05D005960 2.4e-184 649.0 416 74.5
MSTRG.14600 Avicennia marina HOM05D004987 ORTHO05D005960 4.1e-184 648.3 415 74.2
CSS0011246 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 5.3e-184 647.9 415 75.4
PGR004G2886 Punica granatum HOM05D004987 ORTHO05D005960 7.0e-184 647.5 415 72.5
CAN.G9.5 Capsicum annuum HOM05D004987 ORTHO05D005960 9.1e-184 647.1 415 73.5
Migut.M01428 Erythranthe guttata HOM05D004987 ORTHO05D005960 1.2e-183 646.7 415 73.0
Sopen08g019660 Solanum pennellii HOM05D004987 ORTHO05D005960 1.6e-183 646.4 415 73.3
Aa31LG2G12480 Aethionema arabicum HOM05D004987 ORTHO05D005960 3.5e-183 645.2 415 72.3
Cc09_g00600 Coffea canephora HOM05D004987 ORTHO05D005960 5.9e-183 644.4 415 74.5
Solyc08g065990.3 Solanum lycopersicum HOM05D004987 ORTHO05D005960 1.0e-182 643.7 415 73.0
arahy.Tifrunner.gnm1.ann1.016YCC Arachis hypogaea HOM05D004987 ORTHO05D005960 1.3e-182 643.3 452 69.0
Lsat_1_v5_gn_6_62021 Lactuca sativa HOM05D004987 ORTHO05D005960 2.2e-182 642.5 416 72.8
Aqoxy5G03428 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 8.5e-182 640.6 416 72.1
SGA_v2.0_scaffold54G19512 Striga asiatica HOM05D004987 ORTHO05D005960 8.5e-182 640.6 415 73.0
EL10Ac3g07283 Beta vulgaris HOM05D004987 ORTHO05D005960 2.5e-181 639.0 415 72.8
vmacro03626 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 7.2e-181 637.5 415 73.5
DCAR_014269 Daucus carota HOM05D004987 ORTHO05D005960 1.6e-180 636.3 415 74.2
TPR.G32192 Trifolium pratense HOM05D004987 ORTHO05D005960 1.6e-180 636.3 415 72.5
AL7G38570 Arabidopsis lyrata HOM05D004987 ORTHO05D005960 6.1e-180 634.4 416 71.4
Carub.0007s2509 Capsella rubella HOM05D004987 ORTHO05D005960 1.0e-179 633.6 416 71.2
SGA_v2.0_scaffold111G31506 Striga asiatica HOM05D004987 ORTHO05D005960 8.8e-179 630.6 435 69.0
Oeu057036.1 Olea europaea HOM05D004987 ORTHO05D005960 1.2e-178 630.2 415 73.7
Sp7g14970 Schrenkiella parvula HOM05D004987 ORTHO05D005960 3.4e-178 628.6 416 71.2
AUR62030265 Chenopodium quinoa HOM05D004987 ORTHO05D005960 5.7e-178 627.9 415 72.5
Medtr4g062080 Medicago truncatula HOM05D004987 ORTHO05D005960 8.3e-177 624.0 417 70.5
AT4G16440 Arabidopsis thaliana HOM05D004987 ORTHO05D005960 1.8e-176 622.9 416 70.0
MBI19_g25589_MAGBIO Magnolia biondii HOM05D004987 ORTHO05D005960 2.4e-176 622.5 416 70.9
Thhalv10025117m.g Eutrema salsugineum HOM05D004987 ORTHO05D005960 5.4e-176 621.3 416 70.2
unitig_749.g13618 Utricularia gibba HOM05D004987 ORTHO05D005960 9.1e-176 620.5 415 70.6
A01p21160 Brassica napus HOM05D004987 ORTHO05D005960 1.2e-175 620.2 416 70.2
C01p26430 Brassica napus HOM05D004987 ORTHO05D005960 2.0e-175 619.4 416 70.2
BcaC09g50343 Brassica carinata HOM05D004987 ORTHO05D005960 1.7e-174 616.3 416 70.0
BolC1t02590H Brassica oleracea HOM05D004987 ORTHO05D005960 1.7e-174 616.3 416 70.0
PSO017G3064 Papaver somniferum HOM05D004987 ORTHO05D005960 1.7e-174 616.3 420 72.1
BcaNung00197 Brassica carinata HOM05D004987 ORTHO05D005960 5.0e-174 614.8 416 69.0
CDE07G0546 Ceratophyllum demersum HOM05D004987 ORTHO05D005960 8.5e-174 614.0 415 69.6
CARHR222790 Cardamine hirsuta HOM05D004987 ORTHO05D005960 1.5e-173 613.2 417 68.3
PSO675G1563 Papaver somniferum HOM05D004987 ORTHO05D005960 1.5e-173 613.2 420 71.4
BraA01t02026Z Brassica rapa HOM05D004987 ORTHO05D005960 6.1e-172 607.8 440 66.6
Nitab4.5_0002021g0020 Nicotiana tabacum HOM05D004987 ORTHO05D005960 2.6e-170 602.4 415 69.6
ATR0594G143 Amborella trichopoda HOM05D004987 ORTHO05D005960 3.4e-170 602.1 417 69.8
Zm00001eb214910 Zea mays HOM05D004987 ORTHO05D005960 3.4e-170 602.1 415 67.2
Os03g0748700 Oryza sativa ssp. japonica HOM05D004987 ORTHO05D005960 4.4e-170 601.7 415 67.5
Sabra06G0012100 Salix brachista HOM05D004987 ORTHO05D005960 7.5e-170 600.9 451 65.9
Sabra16G0013000 Salix brachista HOM05D004987 ORTHO05D005960 7.5e-170 600.9 505 59.4
Zm00001eb057200 Zea mays HOM05D004987 ORTHO05D005960 6.3e-169 597.8 415 66.5
Lsat_1_v5_gn_0_32381 Lactuca sativa HOM05D004987 ORTHO05D005960 5.6e-165 584.7 399 70.9
SHI24440 Sapria himalayana HOM05D004987 ORTHO05D005960 5.2e-163 578.2 434 63.8
MD10G1336400 Malus domestica HOM05D004987 ORTHO05D005960 7.5e-162 574.3 401 71.8
Eucgr.D01441 Eucalyptus grandis HOM05D004987 ORTHO05D005960 1.0e-158 563.9 365 72.9
vmacro23178 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 1.1e-157 560.5 413 67.8
Lj2g0000431 Lotus japonicus HOM05D004987 ORTHO05D005960 5.6e-157 558.1 417 66.4
Lsat_1_v5_gn_6_62041 Lactuca sativa HOM05D004987 ORTHO05D005960 3.2e-152 542.3 415 63.4
AagrBONN_evm.TU.Sc2ySwM_368.1142 Anthoceros agrestis HOM05D004987 ORTHO05D005960 9.2e-152 540.8 418 60.8
Cc10_g02370 Coffea canephora HOM05D004987 ORTHO05D005960 2.7e-151 539.3 481 59.0
Mapoly0020s0065 Marchantia polymorpha HOM05D004987 ORTHO05D005960 6.0e-151 538.1 419 61.3
Pp3c6_16630 Physcomitrium patens HOM05D004987 ORTHO05D005960 3.0e-150 535.8 416 60.3
CsaV3_UNG059470 Cucumis sativus L. HOM05D004987 ORTHO05D005960 1.5e-149 533.5 413 69.7
SMO356G0034 Selaginella moellendorffii HOM05D004987 ORTHO05D005960 1.8e-147 526.6 416 60.8
Cpa.g.sc27.253 Carica papaya HOM05D004987 ORTHO05D005960 4.9e-137 491.9 299 76.6
Potri.016G008700 Populus trichocarpa HOM05D004987 ORTHO05D005960 9.6e-125 451.1 293 73.7
SEGI_15851 Sequoiadendron giganteum HOM05D004987 ORTHO05D005960 1.5e-101 374.0 263 65.4
MCO07G565 Micromonas commoda HOM05D004987 ORTHO05D005960 3.6e-87 326.2 446 44.4
Cre03.g200550 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 7.9e-87 325.1 520 36.9
Ciclev10027102m.g Citrus clementina HOM05D004987 ORTHO05D005960 2.8e-84 316.6 182 78.0
AagrBONN_evm.TU.Sc2ySwM_368.3306 Anthoceros agrestis HOM05D004987 ORTHO05D005960 1.3e-76 291.2 210 63.3
ATR0751G100 Amborella trichopoda HOM05D004987 ORTHO05D005960 7.7e-74 282.0 249 57.8
HPP92_013953 Vanilla planifolia HOM05D004987 ORTHO05D005960 2.2e-73 280.4 196 65.8
Atru.chr1.2336 Acer truncatum HOM05D004987 ORTHO05D005960 1.1e-72 278.1 381 44.4
Ciclev10004004m.g Citrus clementina HOM05D004987 ORTHO05D005960 3.1e-67 260.0 175 68.6
Lsat_1_v5_gn_6_62060 Lactuca sativa HOM05D004987 ORTHO05D005960 1.8e-62 244.2 145 80.0
PRCOL_00000051 Prasinoderma coloniale HOM05D004987 ORTHO05D005960 1.5e-61 241.1 454 35.0
TWI38G1931 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 4.8e-60 236.1 266 47.7
arahy.Tifrunner.gnm1.ann1.24PAJQ Arachis hypogaea HOM05D004987 ORTHO05D005960 4.0e-54 216.5 428 34.1
Aqoxy4G02991 Aquilegia oxysepala HOM05D000252 ORTHO05D000307 4.1e-51 206.5 171 62.6
Cfa026410 Carpinus fangiana HOM05D004987 ORTHO05D005960 1.9e-48 197.6 421 31.8
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 8.9e-46 188.7 384 33.6
Cre09.g396600 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 4.9e-44 183.0 455 29.5
FAN21G3552 Fragaria x ananassa HOM05D004987 ORTHO05D005960 6.4e-44 182.6 119 79.0
arahy.Tifrunner.gnm1.ann1.4D4U0P Arachis hypogaea HOM05D004987 ORTHO05D005960 9.2e-43 178.7 212 50.0
Cre03.g199800 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 1.9e-40 171.0 420 27.9
Aqoxy6G02697 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 8.1e-31 139.0 216 39.4
arahy.Tifrunner.gnm1.ann1.GKV1XW Arachis hypogaea HOM05D004987 ORTHO05D005960 4.7e-15 86.7 64 65.6
AagrBONN_evm.TU.Sc2ySwM_368.1145 Anthoceros agrestis HOM05D004987 ORTHO05D005960 2.4e-14 84.3 106 42.5
arahy.Tifrunner.gnm1.ann1.YI5A3W Arachis hypogaea HOM05D004987 ORTHO05D005960 7.6e-13 79.3 107 42.1
arahy.Tifrunner.gnm1.ann1.N1GFR4 Arachis hypogaea HOM05D004987 ORTHO05D005960 3.5e-10 70.5 84 44.0
arahy.Tifrunner.gnm1.ann1.028TPL Arachis hypogaea HOM05D004987 ORTHO05D005960 1.6e-07 61.6 70 44.3
AagrBONN_evm.TU.Sc2ySwM_368.1144 Anthoceros agrestis HOM05D004987 ORTHO05D005960 4.8e-07 60.1 83 42.2


User provided reference genes

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