Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 1.3e-216 756.1 400 100.0
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 5.8e-196 687.6 399 91.7
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 1.9e-194 682.6 399 91.7
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 3.4e-180 635.2 400 86.2
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 1.5e-167 593.2 384 84.6
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 8.6e-123 444.5 407 65.6
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 2.1e-121 439.9 402 66.9
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 8.0e-121 438.0 407 64.6
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 6.8e-120 434.9 399 64.2
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 7.5e-119 431.4 403 65.0
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 7.0e-117 424.9 402 64.2
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 5.0e-115 418.7 407 64.4
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 1.5e-111 407.1 404 62.4
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 1.3e-110 404.1 415 61.0
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.7e-110 403.7 404 61.9
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 2.9e-110 402.9 403 62.3
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 8.3e-110 401.4 403 61.0
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 5.4e-109 398.7 403 61.0
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 1.6e-108 397.1 403 60.3
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 3.0e-107 392.9 356 65.2
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 7.3e-106 388.3 404 61.1
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 4.0e-104 382.5 402 59.5
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 6.8e-104 381.7 402 61.2
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 8.9e-104 381.3 402 59.2
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.6e-103 379.8 414 58.9
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 5.8e-103 378.6 422 56.9
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 1.9e-101 373.6 407 59.0
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 3.2e-101 372.9 409 58.7
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 1.6e-100 370.5 420 57.6
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 1.6e-100 370.5 413 58.1
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 1.7e-99 367.1 389 59.6
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 3.9e-99 365.9 354 65.0
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 6.6e-99 365.2 403 59.3
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 1.1e-98 364.4 410 57.3
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.9e-98 363.6 353 60.1
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 5.6e-98 362.1 411 56.9
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 7.3e-98 361.7 409 57.0
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 2.8e-97 359.8 408 57.8
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 8.1e-97 358.2 410 56.3
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 1.1e-96 357.8 418 56.5
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 1.1e-96 357.8 405 56.0
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 1.4e-96 357.5 409 57.7
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 5.2e-96 355.5 353 59.2
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 8.9e-96 354.8 405 57.0
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 2.0e-95 353.6 399 58.1
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 2.0e-95 353.6 402 56.5
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 3.4e-95 352.8 414 56.3
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 5.8e-95 352.1 404 57.7
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 7.6e-95 351.7 353 59.2
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 2.2e-94 350.1 405 57.5
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 1.4e-93 347.4 398 56.8
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 3.2e-93 346.3 372 59.1
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 2.7e-92 343.2 372 58.6
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 3.5e-92 342.8 372 58.9
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 3.3e-90 336.3 416 53.8
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 1.3e-89 334.3 405 56.0
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 1.6e-89 334.0 401 57.1
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 1.6e-89 334.0 438 55.7
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 2.4e-88 330.1 404 55.4
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 3.1e-88 329.7 416 53.4
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 4.0e-88 329.3 416 53.4
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 1.1e-85 321.2 400 56.0
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 1.1e-85 321.2 438 54.3
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 5.4e-85 318.9 402 54.7
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 1.6e-84 317.4 404 54.5
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.6e-84 315.8 332 60.2
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 4.6e-84 315.8 422 51.7
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 7.9e-84 315.1 337 57.3
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 5.1e-83 312.4 349 55.9
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 2.4e-80 303.5 413 51.6
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 5.3e-80 302.4 404 51.5
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 9.9e-79 298.1 412 51.7
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 2.9e-78 296.6 406 50.7
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 2.9e-78 296.6 399 52.4
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 4.9e-78 295.8 396 53.0
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 6.4e-78 295.4 409 51.1
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 1.6e-76 290.8 396 53.0
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 1.0e-75 288.1 381 50.4
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 2.3e-75 287.0 403 50.4
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 6.7e-75 285.4 400 49.2
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 8.7e-75 285.0 405 47.7
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 9.6e-74 281.6 398 49.0
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 8.1e-73 278.5 380 54.2
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.4e-72 277.7 334 54.8
Aa31LG6G60 Aethionema arabicum HOM05D004683 ORTHO05D005388 1.8e-72 277.3 409 48.7
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 1.8e-72 277.3 404 50.2
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 3.1e-72 276.6 411 50.1
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 1.5e-71 274.2 406 47.5
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 2.0e-71 273.9 398 49.0
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 5.8e-71 272.3 267 64.4
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 7.6e-71 271.9 400 48.5
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 1.0e-70 271.6 390 48.7
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 8.4e-70 268.5 409 47.9
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 1.9e-69 267.3 309 58.9
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 1.9e-69 267.3 403 47.4
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 9.3e-69 265.0 409 47.4
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 4.3e-66 256.1 401 48.6
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 4.8e-65 252.7 401 50.9
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 8.2e-65 251.9 374 49.2
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 1.4e-64 251.1 398 49.2
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 6.9e-64 248.8 283 58.0
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 6.9e-64 248.8 283 58.0
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 2.0e-63 247.3 390 48.7
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 2.0e-63 247.3 390 48.7
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 2.0e-63 247.3 401 48.9
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 5.9e-63 245.7 398 48.2
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 7.6e-63 245.4 397 48.9
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 1.0e-62 245.0 407 45.2
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 1.3e-62 244.6 390 47.9
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 2.9e-62 243.4 396 48.5
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 1.1e-61 241.5 315 53.0
Ca_00746_v3 Cicer arietinum L. HOM05D004683 ORTHO05D005388 1.4e-61 241.1 323 51.4
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 2.5e-61 240.4 380 48.4
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 3.2e-61 240.0 364 49.7
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 3.6e-60 236.5 403 44.4
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 4.6e-60 236.1 408 44.4
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 5.1e-59 232.6 421 43.2
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 5.9e-55 219.2 406 42.4
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 1.8e-51 207.6 332 43.1
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 8.2e-49 198.7 295 48.1
Sopen11g007340 Solanum pennellii HOM05D004683 ORTHO05D005388 7.7e-47 192.2 183 61.7
CAN.G1263.24 Capsicum annuum HOM05D004683 ORTHO05D005388 1.2e-44 184.9 388 40.7
unitig_37.g12183 Utricularia gibba HOM05D004683 ORTHO05D005388 1.0e-43 181.8 224 51.3
BcaNung00108 Brassica carinata HOM05D004683 ORTHO05D005388 3.7e-41 173.3 249 51.8
ECA246G4668 Erigeron canadensis HOM05D004683 ORTHO05D005388 6.3e-41 172.6 308 42.9
CSS0001859 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 8.2e-41 172.2 221 52.9
CSS0027604 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 8.2e-41 172.2 221 52.9
CSS0022133 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.1e-36 157.5 206 52.9
MSTRG.16041 Avicennia marina HOM05D004683 ORTHO05D005388 1.2e-31 141.7 183 50.8
PSO339G0967 Papaver somniferum HOM05D004683 ORTHO05D005388 5.0e-30 136.3 106 69.8
Zm00001eb057420 Zea mays HOM05D004683 ORTHO05D005388 1.9e-29 134.4 409 35.0
CDE04G1899 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 4.2e-29 133.3 381 35.7
Sopen00g010710 Solanum pennellii HOM05D004683 ORTHO05D005388 4.2e-29 133.3 189 50.3
CSS0011389 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 9.4e-29 132.1 119 64.7
MSTRG.14824 Avicennia marina HOM05D004683 ORTHO05D005388 4.7e-28 129.8 117 64.1
CSS0042721 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 6.1e-28 129.4 202 47.5
CSS0022243 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.4e-27 128.3 202 47.0
Zm00001eb214850 Zea mays HOM05D004683 ORTHO05D005388 1.4e-27 128.3 400 34.2
CSS0009085 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.8e-27 127.9 202 47.0
CSS0004114 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.2e-27 126.3 202 46.5
CSS0017523 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.5e-26 124.8 202 46.0
CSS0049827 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.0e-26 124.4 202 46.5
COL.COLO4_30227 Corchorus olitorius HOM05D001156 ORTHO05D001006 2.9e-22 110.5 103 65.0
CDE07G1645 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 5.0e-22 109.8 325 36.3
CSS0019011 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.7e-20 103.2 145 49.0
Os03g0750900 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 8.0e-20 102.4 253 37.5
FAN11G0338 Fragaria x ananassa HOM05D004683 ORTHO05D035386 2.5e-13 80.9 153 43.8
A09p40660 Brassica napus HOM05D004683 ORTHO05D005388 5.6e-13 79.7 74 62.2
SMO351G0434 Selaginella moellendorffii HOM05D025386 ORTHO05D005388 7.3e-13 79.3 198 32.8
Sabra19G0093600 Salix brachista HOM05D000057 ORTHO05D005388 1.2e-10 72.0 93 54.8
QL07p047840 Quercus lobata HOM05D004683 ORTHO05D005388 4.9e-09 66.6 54 72.2
Os05g0547100 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 1.4e-08 65.1 167 37.1
FvH4_3g38640 Fragaria vesca HOM05D037407 ORTHO05D035386 4.1e-08 63.5 71 57.7
FvH4_3g16370 Fragaria vesca HOM05D037407 ORTHO05D035386 5.4e-08 63.2 76 51.3
AagrBONN_evm.TU.Sc2ySwM_117.2428 Anthoceros agrestis HOM05D025386 ORTHO05D026614 8.6e-06 55.8 133 33.1
SEGI_33504 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 8.6e-06 55.8 127 33.1


User provided reference genes

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