Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C025492.2 Cucumis melo HOM05D000283 ORTHO05D006673 0.0e+00 1841.6 1014 100.0
MELO3C025491.2 Cucumis melo HOM05D000283 ORTHO05D006673 0.0e+00 1471.8 1077 78.8
ClCG09G020330 Citrullus lanatus HOM05D000283 ORTHO05D006673 0.0e+00 1391.7 1041 73.4
CsaV3_5G026060 Cucumis sativus L. HOM05D000283 ORTHO05D006673 0.0e+00 1380.5 1056 72.6
MELO3C025488.2 Cucumis melo HOM05D000283 ORTHO05D006673 0.0e+00 1315.8 1034 70.6
Sed0026677 Sechium edule HOM05D000283 ORTHO05D006673 6.9e-310 1067.4 1047 59.1
Sed0006338 Sechium edule HOM05D000283 ORTHO05D006673 1.9e-307 1059.3 1045 60.1
CsaV3_5G026070 Cucumis sativus L. HOM05D000283 ORTHO05D006673 1.6e-245 853.6 676 75.7
CsaV3_5G026100 Cucumis sativus L. HOM05D000283 ORTHO05D006673 2.6e-168 597.0 344 84.0
ClCG09G020310 Citrullus lanatus HOM05D000283 ORTHO05D006673 1.5e-110 405.2 1376 29.6
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 2.2e-82 311.6 659 36.0
QL08p057512 Quercus lobata HOM05D000283 ORTHO05D006673 9.9e-75 286.2 664 34.3
CiPaw.02G178500 Carya illinoinensis HOM05D000283 ORTHO05D006673 7.1e-73 280.0 662 33.1
CiPaw.01G279600 Carya illinoinensis HOM05D000283 ORTHO05D006673 1.9e-70 271.9 730 31.5
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 1.8e-68 265.4 689 33.1
arahy.Tifrunner.gnm1.ann1.SA4FWZ Arachis hypogaea HOM05D000283 ORTHO05D006673 2.4e-65 255.0 673 32.1
CSS0006513 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 2.4e-65 255.0 647 34.3
CSS0040218 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 2.4e-65 255.0 647 34.3
arahy.Tifrunner.gnm1.ann1.U4C8JV Arachis hypogaea HOM05D000283 ORTHO05D006673 5.1e-63 247.3 714 31.0
Thecc.10G063100 Theobroma cacao HOM05D000283 ORTHO05D006673 2.1e-61 241.9 669 32.7
Gohir.A05G352800 Gossypium hirsutum HOM05D000283 ORTHO05D006673 1.1e-60 239.6 658 32.7
Ciclev10033332m.g Citrus clementina HOM05D000283 ORTHO05D006673 3.1e-60 238.0 764 30.1
Duzib114G0075 Durio zibethinus HOM05D000283 ORTHO05D006673 7.6e-59 233.4 718 30.6
Phvul.007G007900 Phaseolus vulgaris HOM05D000283 ORTHO05D006673 1.0e-58 233.0 666 31.8
VMungo0720G0439 Vigna mungo HOM05D000283 ORTHO05D006673 6.4e-58 230.3 666 31.5
Gorai.012G066900 Gossypium raimondii HOM05D000283 ORTHO05D006673 1.4e-57 229.2 693 31.7
TWI38G0559 Tripterygium wilfordii HOM05D000283 ORTHO05D006673 1.2e-56 226.1 673 31.4
Gohir.D04G060201 Gossypium hirsutum HOM05D000283 ORTHO05D006673 3.5e-56 224.6 658 32.7
Manes.10G039300 Manihot esculenta HOM05D000283 ORTHO05D006673 4.6e-56 224.2 840 30.4
Psat6g238520 Pisum sativum HOM05D000283 ORTHO05D006673 6.7e-55 220.3 678 31.1
Glyma.10G292400 Glycine max HOM05D000283 ORTHO05D006673 1.9e-54 218.8 751 30.5
Medtr1g115950 Medicago truncatula HOM05D000283 ORTHO05D006673 3.3e-54 218.0 682 30.9
Atru.chr12.593 Acer truncatum HOM05D000283 ORTHO05D006673 1.3e-53 216.1 751 28.9
Manes.10G039200 Manihot esculenta HOM05D000283 ORTHO05D006673 3.7e-53 214.5 665 32.5
Lj5g0015824 Lotus japonicus HOM05D000283 ORTHO05D006673 4.8e-53 214.2 701 30.5
Lalb_Chr02g0143851 Lupinus albus HOM05D000283 ORTHO05D006673 1.1e-52 213.0 669 30.9
COL.COLO4_29238 Corchorus olitorius HOM05D000283 ORTHO05D006673 2.4e-52 211.8 665 31.9
Glyma.20G242400 Glycine max HOM05D000283 ORTHO05D006673 3.1e-52 211.5 659 29.7
Ca_11324_v3 Cicer arietinum L. HOM05D000283 ORTHO05D006673 1.0e-50 206.5 711 29.8
TPR.G10427 Trifolium pratense HOM05D000283 ORTHO05D006673 5.0e-50 204.1 664 31.0
Hma1.2p1_0348F.1_g131680 Hydrangea macrophylla HOM05D000283 ORTHO05D006673 8.4e-50 203.4 626 31.0
RcHm_v2.0_Chr1g0365001 Rosa chinensis HOM05D000283 ORTHO05D006673 2.1e-48 198.7 732 30.2
Lalb_Chr02g0143831 Lupinus albus HOM05D000283 ORTHO05D006673 3.9e-47 194.5 650 30.3
MD07G1184600 Malus domestica HOM05D000283 ORTHO05D006673 8.7e-47 193.4 688 30.4
Prupe.2G224500 Prunus persica HOM05D000283 ORTHO05D006673 2.4e-44 185.3 674 28.9
CANSAT56G3782 Cannabis sativa HOM05D000283 ORTHO05D006673 2.6e-43 181.8 729 28.4
Sabra10G0165500 Salix brachista HOM05D000283 ORTHO05D006673 5.5e-41 174.1 642 30.1
Eucgr.G02778 Eucalyptus grandis HOM05D000283 ORTHO05D006673 7.2e-41 173.7 647 30.1
TAR636G0162 Trochodendron aralioides HOM05D000283 ORTHO05D006673 1.6e-40 172.6 674 30.3
Peaxi162Scf00135g00027 Petunia axillaris HOM05D000283 ORTHO05D006673 4.6e-40 171.0 717 27.6
Potri.010G213800 Populus trichocarpa HOM05D000283 ORTHO05D006673 7.9e-40 170.2 647 28.0
Rhsim09G0155800 Rhododendron simsii HOM05D000283 ORTHO05D006673 5.1e-39 167.5 655 29.5
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 7.4e-38 163.7 724 28.2
MD01G1117200 Malus domestica HOM05D000283 ORTHO05D006673 1.7e-37 162.5 727 27.8
TAR633G0056 Trochodendron aralioides HOM05D000283 ORTHO05D006673 6.3e-37 160.6 668 29.6
FvH4_7g20760 Fragaria vesca HOM05D000283 ORTHO05D006673 1.8e-36 159.1 795 28.2
FAN03G1488 Fragaria x ananassa HOM05D000283 ORTHO05D006673 1.8e-36 159.1 674 29.1
FAN06G0550 Fragaria x ananassa HOM05D000283 ORTHO05D006673 6.9e-36 157.1 785 27.6
FAN06G2682 Fragaria x ananassa HOM05D000283 ORTHO05D006673 6.9e-36 157.1 784 27.4
Potri.008G047600 Populus trichocarpa HOM05D000283 ORTHO05D006673 2.0e-35 155.6 668 27.8
Duzib106G1116 Durio zibethinus HOM05D000283 ORTHO05D006673 4.5e-35 154.5 684 27.6
Aqoxy2G01934 Aquilegia oxysepala HOM05D000283 ORTHO05D006673 2.9e-34 151.8 628 30.3
Cc02_g08660 Coffea canephora HOM05D000283 ORTHO05D006673 3.8e-34 151.4 641 29.3
Nn2g11490 Nelumbo nucifera HOM05D000283 ORTHO05D006673 6.5e-34 150.6 458 29.9
SalBow6G2235 Salvia bowleyana HOM05D000283 ORTHO05D006673 1.1e-33 149.8 730 28.2
PSO782G0271 Papaver somniferum HOM05D000283 ORTHO05D006673 3.9e-31 141.4 447 31.1
Sabra08G0033700 Salix brachista HOM05D000283 ORTHO05D006673 3.9e-31 141.4 656 26.8
MSTRG.8954 Avicennia marina HOM05D000283 ORTHO05D006673 2.6e-30 138.7 655 28.7
Cpa.g.sc1.302 Carica papaya HOM05D000283 ORTHO05D006673 4.8e-29 134.4 200 41.0
Lj8A92T85 Lonicera japonica HOM05D000283 ORTHO05D006673 6.3e-29 134.0 720 27.1
MSTRG.27328 Avicennia marina HOM05D000283 ORTHO05D006673 4.1e-28 131.3 655 28.1
PSO478G2008 Papaver somniferum HOM05D000283 ORTHO05D006673 9.1e-28 130.2 666 27.2
Nitab4.5_0007221g0010 Nicotiana tabacum HOM05D000283 ORTHO05D006673 1.2e-27 129.8 627 26.2
THA.LOC104799366 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 2.6e-27 128.6 697 26.0
GSVIVG01032629001 Vitis vinifera HOM05D000283 ORTHO05D006673 2.6e-27 128.6 442 30.8
Nitab4.5_0006737g0060 Nicotiana tabacum HOM05D000283 ORTHO05D006673 1.3e-26 126.3 632 25.9
PGSC0003DMG400011491 Solanum tuberosum HOM05D000283 ORTHO05D006673 9.7e-22 110.2 607 26.9
Migut.F00680 Erythranthe guttata HOM05D000283 ORTHO05D006673 2.8e-21 108.6 641 27.6
THA.LOC104809887 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 1.0e-18 100.1 684 25.9
Solyc04g010185.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 2.9e-18 98.6 673 24.7
PGSC0003DMG400011472 Solanum tuberosum HOM05D000283 ORTHO05D006673 2.9e-18 98.6 315 29.5
Sopen04g005360 Solanum pennellii HOM05D000283 ORTHO05D006673 5.0e-18 97.8 675 24.4
PGSC0003DMG400011483 Solanum tuberosum HOM05D000283 ORTHO05D006673 6.1e-16 90.9 663 24.4
Haze_16971 Corylus avellana HOM05D000283 ORTHO05D006673 1.4e-15 89.7 252 29.4
Oeu025162.3 Olea europaea HOM05D000283 ORTHO05D006673 4.0e-15 88.2 189 35.4
Sopen04g005270 Solanum pennellii HOM05D000283 ORTHO05D006673 6.3e-13 80.9 610 24.8
DCAR_010662 Daucus carota HOM05D000283 ORTHO05D006673 2.4e-12 79.0 452 26.5
DCAR_020267 Daucus carota HOM05D000457 ORTHO05D000560 1.6e-11 76.3 495 25.1
BcaNung01143 Brassica carinata HOM05D010678 ORTHO05D006673 1.3e-10 73.2 316 28.5
AL6G24200 Arabidopsis lyrata HOM05D010678 ORTHO05D006673 5.0e-10 71.2 441 26.5
Cpa.g.sc1.301 Carica papaya HOM05D000283 ORTHO05D006673 3.6e-08 65.1 409 24.0


User provided reference genes

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