Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C025487.2 Cucumis melo HOM05D007397 ORTHO05D009336 3.5e-95 351.7 186 100.0
ClCG09G020320 Citrullus lanatus HOM05D007397 ORTHO05D009336 2.4e-80 302.4 186 87.1
CsaV3_5G026110 Cucumis sativus L. HOM05D007397 ORTHO05D009336 2.4e-80 302.4 174 93.7
Sed0011140 Sechium edule HOM05D007397 ORTHO05D009336 5.1e-62 241.5 185 70.8
Cfa001558 Carpinus fangiana HOM05D007397 ORTHO05D009336 8.5e-57 224.2 188 68.1
Haze_16973 Corylus avellana HOM05D007397 ORTHO05D009336 9.4e-56 220.7 189 65.1
CANSAT64G2695 Cannabis sativa HOM05D007397 ORTHO05D009336 1.2e-55 220.3 192 63.5
FAN03G3257 Fragaria x ananassa HOM05D007397 ORTHO05D009336 1.8e-54 216.5 179 64.8
CSS0023256 Camellia sinensis var. sinensis HOM05D007397 ORTHO05D009336 6.7e-54 214.5 187 63.6
GSVIVG01032626001 Vitis vinifera HOM05D007397 ORTHO05D009336 8.8e-54 214.2 198 58.6
Actinidia38224 Actinidia chinensis HOM05D007397 ORTHO05D009336 7.4e-53 211.1 179 64.2
FAN01G1406 Fragaria x ananassa HOM05D007397 ORTHO05D009336 1.3e-52 210.3 178 63.5
CiPaw.01G279900 Carya illinoinensis HOM05D007397 ORTHO05D009336 2.2e-52 209.5 189 63.5
FAN01G1537 Fragaria x ananassa HOM05D007397 ORTHO05D009336 2.2e-52 209.5 178 63.5
Sopen04g005370 Solanum pennellii HOM05D007397 ORTHO05D009336 2.2e-52 209.5 191 62.8
Ca_11323_v3 Cicer arietinum L. HOM05D007397 ORTHO05D009336 2.8e-52 209.1 184 63.6
Glyma.06G097000 Glycine max HOM05D007397 ORTHO05D009336 2.8e-52 209.1 186 61.8
PGSC0003DMG400011470 Solanum tuberosum HOM05D007397 ORTHO05D009336 2.8e-52 209.1 189 63.5
TAR320G0002 Trochodendron aralioides HOM05D007397 ORTHO05D009336 3.7e-52 208.8 188 61.2
MD07G1184800 Malus domestica HOM05D007397 ORTHO05D009336 4.1e-51 205.3 184 63.0
Medtr1g115740 Medicago truncatula HOM05D007397 ORTHO05D009336 4.1e-51 205.3 184 59.8
Oeu044824.1 Olea europaea HOM05D007397 ORTHO05D009336 4.1e-51 205.3 188 61.7
Glyma.04G095200 Glycine max HOM05D007397 ORTHO05D009336 5.3e-51 204.9 186 62.4
Lj5g0010768 Lotus japonicus HOM05D007397 ORTHO05D009336 5.3e-51 204.9 179 65.9
Cpa.g.sc1.304 Carica papaya HOM05D007397 ORTHO05D009336 7.0e-51 204.5 181 65.2
SGA_v2.0_scaffold165G38243 Striga asiatica HOM05D007397 ORTHO05D009336 1.2e-50 203.8 188 61.7
Cc02_g08640 Coffea canephora HOM05D007397 ORTHO05D009336 3.5e-50 202.2 199 58.3
Solyc04g010190.1 Solanum lycopersicum HOM05D007397 ORTHO05D009336 1.0e-49 200.7 189 61.4
Hma1.2p1_0348F.1_g131665 Hydrangea macrophylla HOM05D007397 ORTHO05D009336 1.7e-49 199.9 193 61.1
Hma1.2p1_0348F.1_g131670 Hydrangea macrophylla HOM05D007397 ORTHO05D009336 1.7e-49 199.9 193 61.1
Prupe.2G224700 Prunus persica HOM05D007397 ORTHO05D009336 5.0e-49 198.4 184 61.4
MSTRG.7898 Avicennia marina HOM05D007397 ORTHO05D009336 8.5e-49 197.6 186 60.8
AL3G23990 Arabidopsis lyrata HOM05D007397 ORTHO05D009336 1.1e-48 197.2 179 60.3
Phvul.009G036400 Phaseolus vulgaris HOM05D007397 ORTHO05D009336 1.1e-48 197.2 173 60.7
A05p37050 Brassica napus HOM05D007397 ORTHO05D009336 4.2e-48 195.3 171 59.6
BolC5t34214H Brassica oleracea HOM05D007397 ORTHO05D009336 5.5e-48 194.9 168 60.1
RcHm_v2.0_Chr1g0365021 Rosa chinensis HOM05D007397 ORTHO05D009336 5.5e-48 194.9 180 61.1
Carub.0003s1170 Capsella rubella HOM05D007397 ORTHO05D009336 7.2e-48 194.5 180 60.0
Lj1P929T40 Lonicera japonica HOM05D007397 ORTHO05D009336 7.2e-48 194.5 142 66.9
C05p55480 Brassica napus HOM05D007397 ORTHO05D009336 9.4e-48 194.1 168 59.5
Lalb_Chr06g0164111 Lupinus albus HOM05D007397 ORTHO05D009336 9.4e-48 194.1 183 63.4
Nn2g12828 Nelumbo nucifera HOM05D007397 ORTHO05D009336 1.2e-47 193.7 205 55.1
BcaC05g29269 Brassica carinata HOM05D007397 ORTHO05D009336 1.6e-47 193.4 168 61.9
Thhalv10021616m.g Eutrema salsugineum HOM05D007397 ORTHO05D009336 2.1e-47 193.0 172 62.2
BraA05t22502Z Brassica rapa HOM05D007397 ORTHO05D009336 2.7e-47 192.6 173 59.5
TPR.G10388 Trifolium pratense HOM05D007397 ORTHO05D009336 2.7e-47 192.6 186 59.7
Sp3g10540 Schrenkiella parvula HOM05D007397 ORTHO05D009336 4.7e-47 191.8 178 57.3
Psat6g239080 Pisum sativum HOM05D007397 ORTHO05D009336 6.1e-47 191.4 191 56.0
CARHR086880 Cardamine hirsuta HOM05D007397 ORTHO05D009336 8.0e-47 191.0 176 59.7
AUR62042666 Chenopodium quinoa HOM05D007397 ORTHO05D009336 1.0e-46 190.7 161 61.5
TWI38G1005 Tripterygium wilfordii HOM05D007397 ORTHO05D009336 1.8e-46 189.9 187 61.5
Potri.010G213600 Populus trichocarpa HOM05D007397 ORTHO05D009336 2.3e-46 189.5 186 61.8
Sabra08G0033900 Salix brachista HOM05D007397 ORTHO05D009336 3.0e-46 189.1 191 58.6
THA.LOC104827311 Tarenaya hassleriana HOM05D007397 ORTHO05D009336 3.0e-46 189.1 172 59.9
Aqoxy5G01687 Aquilegia oxysepala HOM05D007397 ORTHO05D009336 3.9e-46 188.7 186 58.6
AT3G12345 Arabidopsis thaliana HOM05D007397 ORTHO05D009336 3.9e-46 188.7 145 65.5
Migut.L01413 Erythranthe guttata HOM05D007397 ORTHO05D009336 3.9e-46 188.7 188 57.4
Aa31sc153G60 Aethionema arabicum HOM05D007397 ORTHO05D009336 6.7e-46 188.0 178 60.1
VMungo1309G1572 Vigna mungo HOM05D007397 ORTHO05D009336 1.1e-45 187.2 186 57.5
PGR142G1402 Punica granatum HOM05D007397 ORTHO05D009336 2.0e-45 186.4 191 58.6
QL08p057549 Quercus lobata HOM05D007397 ORTHO05D009336 4.4e-45 185.3 189 57.7
Rhsim09G0155900 Rhododendron simsii HOM05D007397 ORTHO05D009336 7.4e-45 184.5 158 62.7
Dinv25942 Davidia involucrata HOM05D007397 ORTHO05D009336 1.3e-44 183.7 173 61.8
Thecc.10G062300 Theobroma cacao HOM05D007397 ORTHO05D009336 1.3e-44 183.7 136 72.1
SalBow2G2387 Salvia bowleyana HOM05D007397 ORTHO05D009336 1.7e-44 183.3 184 57.1
EL10Ac2g03499 Beta vulgaris HOM05D007397 ORTHO05D009336 2.2e-44 183.0 174 55.7
Potri.008G047800 Populus trichocarpa HOM05D007397 ORTHO05D009336 2.2e-44 183.0 193 57.0
MBI05_g32638_MAGBIO Magnolia biondii HOM05D007397 ORTHO05D009336 2.8e-44 182.6 168 56.5
FAN10G1155 Fragaria x ananassa HOM05D007397 ORTHO05D009336 3.7e-44 182.2 171 60.8
Gohir.D10G218000 Gossypium hirsutum HOM05D007397 ORTHO05D009336 3.7e-44 182.2 191 57.6
HanXRQChr14g0460741 Helianthus annuus HOM05D007397 ORTHO05D009336 3.7e-44 182.2 182 59.9
THA.LOC104809886 Tarenaya hassleriana HOM05D007397 ORTHO05D009336 8.2e-44 181.0 162 59.3
BcaB04g21083 Brassica carinata HOM05D007397 ORTHO05D009336 3.5e-42 175.6 185 53.5
BcaB04g21085 Brassica carinata HOM05D007397 ORTHO05D009336 3.5e-42 175.6 185 53.5
Gorai.011G244600 Gossypium raimondii HOM05D007397 ORTHO05D009336 3.5e-42 175.6 198 55.1
DCAR_015250 Daucus carota HOM05D007397 ORTHO05D009336 1.0e-41 174.1 128 69.5
CAN.G1557.1 Capsicum annuum HOM05D007397 ORTHO05D009336 1.7e-41 173.3 116 75.9
Lsat_1_v5_gn_2_115220 Lactuca sativa HOM05D005234 ORTHO05D006583 1.1e-40 170.6 175 59.4
ATR0681G332 Amborella trichopoda HOM05D007397 ORTHO05D009336 2.5e-40 169.5 177 52.0
Sc06g0001870 Simmondsia chinensis HOM05D007397 ORTHO05D009336 2.5e-40 169.5 130 65.4
unitig_22.g6935 Utricularia gibba HOM05D007397 ORTHO05D009336 2.5e-40 169.5 189 56.1
PSO384G5114 Papaver somniferum HOM05D007397 ORTHO05D009336 7.2e-40 167.9 201 49.8
Gohir.A10G209700 Gossypium hirsutum HOM05D007397 ORTHO05D009336 1.6e-39 166.8 193 53.4
Nitab4.5_0007221g0040 Nicotiana tabacum HOM05D007397 ORTHO05D009336 3.0e-38 162.5 189 52.4
PSO339G5749 Papaver somniferum HOM05D007397 ORTHO05D009336 8.8e-38 161.0 199 49.2
HPP92_025097 Vanilla planifolia HOM05D007397 ORTHO05D009336 3.3e-37 159.1 167 50.3
COL.COLO4_37769 Corchorus olitorius HOM05D007397 ORTHO05D009336 7.5e-37 157.9 132 65.2
Atru.chr12.591 Acer truncatum HOM05D007397 ORTHO05D009336 2.2e-36 156.4 191 51.3
CDE02G3908 Ceratophyllum demersum HOM05D001333 ORTHO05D001208 8.3e-36 154.5 155 52.9
Duzib106G0993 Durio zibethinus HOM05D007397 ORTHO05D009336 4.1e-35 152.1 115 70.4
MBI05_g30757_MAGBIO Magnolia biondii HOM05D007397 ORTHO05D009336 5.3e-35 151.8 145 56.6
AUR62025539 Chenopodium quinoa HOM05D007397 ORTHO05D009336 5.9e-34 148.3 155 53.5
Manes.10G039600 Manihot esculenta HOM05D007397 ORTHO05D009336 1.7e-33 146.7 87 82.8
Ciclev10034008m.g Citrus clementina HOM05D007397 ORTHO05D009336 2.2e-33 146.4 92 76.1
SEGI_38306 Sequoiadendron giganteum HOM05D007397 ORTHO05D009336 4.2e-32 142.1 167 48.5
Peaxi162Scf00135g00025 Petunia axillaris HOM05D007397 ORTHO05D009336 5.5e-32 141.7 196 48.0
Mapoly0043s0078 Marchantia polymorpha HOM05D007397 ORTHO05D009336 1.4e-30 137.1 134 51.5
Nitab4.5_0006737g0020 Nicotiana tabacum HOM05D007397 ORTHO05D009336 2.2e-28 129.8 154 51.9
Cfa009156 Carpinus fangiana HOM05D007397 ORTHO05D009336 6.3e-28 128.3 135 60.0
ECA238G2043 Erigeron canadensis HOM05D005234 ORTHO05D006583 1.1e-27 127.5 150 54.0
SMO229G0021 Selaginella moellendorffii HOM05D007397 ORTHO05D009336 5.0e-25 118.6 137 45.3
Os06g0484500 Oryza sativa ssp. japonica HOM05D007397 ORTHO05D009336 1.1e-24 117.5 145 44.8
Zm00001eb397310 Zea mays HOM05D007397 ORTHO05D009336 9.5e-24 114.4 187 42.2
Duzib114G0919 Durio zibethinus HOM05D007397 ORTHO05D009336 1.7e-20 103.6 107 58.9
AagrBONN_evm.TU.Sc2ySwM_368.51 Anthoceros agrestis HOM05D007397 ORTHO05D009336 8.0e-15 84.7 73 53.4
C03p57580 Brassica napus HOM05D007397 ORTHO05D009336 1.4e-14 84.0 112 41.1
BcaC03g17725 Brassica carinata HOM05D007397 ORTHO05D009336 2.6e-13 79.7 108 41.7


User provided reference genes

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