Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C025449.2 Cucumis melo HOM05D006083 ORTHO05D007634 0.0e+00 3477.6 1750 100.0
CsaV3_5G026410 Cucumis sativus L. HOM05D006083 ORTHO05D007634 0.0e+00 3190.2 1740 92.8
ClCG09G020050 Citrullus lanatus HOM05D006083 ORTHO05D007634 0.0e+00 2996.5 1758 86.9
Sed0020975 Sechium edule HOM05D006083 ORTHO05D007634 0.0e+00 2412.5 1761 73.3
Cfa001507 Carpinus fangiana HOM05D006083 ORTHO05D007634 0.0e+00 1286.2 1708 46.1
QL08p059019 Quercus lobata HOM05D006083 ORTHO05D007634 0.0e+00 1286.2 1809 44.8
Haze_17036 Corylus avellana HOM05D006083 ORTHO05D007634 0.0e+00 1285.4 1814 45.1
Prupe.2G231200 Prunus persica HOM05D006083 ORTHO05D007634 0.0e+00 1200.7 1792 43.5
CiPaw.01G284100 Carya illinoinensis HOM05D006083 ORTHO05D007634 0.0e+00 1186.4 1793 43.6
Thecc.10G046700 Theobroma cacao HOM05D006083 ORTHO05D007634 0.0e+00 1162.1 1805 42.9
Manes.07G113300 Manihot esculenta HOM05D006083 ORTHO05D007634 0.0e+00 1128.6 1817 41.6
MD07G1193600 Malus domestica HOM05D006083 ORTHO05D007634 0.0e+00 1114.0 1877 40.3
Potri.008G052500 Populus trichocarpa HOM05D006083 ORTHO05D007634 0.0e+00 1105.5 1781 41.4
Atru.chr12.505 Acer truncatum HOM05D006083 ORTHO05D007634 0.0e+00 1102.0 1629 43.3
Potri.010G208200 Populus trichocarpa HOM05D006083 ORTHO05D007634 0.0e+00 1098.2 1799 41.6
COL.COLO4_14970 Corchorus olitorius HOM05D006083 ORTHO05D007634 0.0e+00 1091.6 1793 41.1
CANSAT56G1432 Cannabis sativa HOM05D006083 ORTHO05D007634 0.0e+00 1081.6 1805 40.6
Dinv31433 Davidia involucrata HOM05D006083 ORTHO05D007634 3.6e-311 1072.4 1795 41.1
CSS0008531 Camellia sinensis var. sinensis HOM05D006083 ORTHO05D007634 3.1e-310 1069.3 1814 39.9
FAN06G0387 Fragaria x ananassa HOM05D006083 ORTHO05D007634 2.6e-309 1066.2 1795 40.6
FAN06G5109 Fragaria x ananassa HOM05D006083 ORTHO05D007634 5.0e-308 1062.0 1828 40.4
Gorai.012G069900 Gossypium raimondii HOM05D006083 ORTHO05D007634 7.2e-307 1058.1 1811 40.5
FAN03G2083 Fragaria x ananassa HOM05D006083 ORTHO05D007634 9.4e-307 1057.7 1799 40.4
Gohir.D04G062600 Gossypium hirsutum HOM05D006083 ORTHO05D007634 4.7e-306 1055.4 1806 40.6
TWI15G0674 Tripterygium wilfordii HOM05D006083 ORTHO05D007634 1.0e-305 1054.3 1803 39.7
Gohir.A05G349900 Gossypium hirsutum HOM05D006083 ORTHO05D007634 1.1e-304 1050.8 1811 40.3
Lj1g0008101 Lotus japonicus HOM05D006083 ORTHO05D007634 1.1e-304 1050.8 1742 39.8
FvH4_7g21930 Fragaria vesca HOM05D006083 ORTHO05D007634 1.5e-304 1050.4 1791 40.2
FAN01G1089 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.5e-304 1050.4 1811 40.4
Sabra08G0037800 Salix brachista HOM05D006083 ORTHO05D007634 2.6e-304 1049.7 1711 41.6
Glyma.18G288300 Glycine max HOM05D006083 ORTHO05D007634 7.2e-299 1031.6 1765 39.0
Actinidia02966 Actinidia chinensis HOM05D006083 ORTHO05D007634 4.4e-296 1022.3 1811 39.0
Duzib114G0803 Durio zibethinus HOM05D006083 ORTHO05D007634 4.8e-295 1018.8 1394 44.2
VMungo1383G1537 Vigna mungo HOM05D006083 ORTHO05D007634 3.3e-288 996.1 1739 38.8
arahy.Tifrunner.gnm1.ann1.ES2X5Y Arachis hypogaea HOM05D006083 ORTHO05D007634 1.2e-285 987.6 1765 38.4
arahy.Tifrunner.gnm1.ann1.V7LDKI Arachis hypogaea HOM05D006083 ORTHO05D007634 1.2e-285 987.6 1765 38.4
Rhsim03G0132700 Rhododendron simsii HOM05D006083 ORTHO05D007634 1.0e-284 984.6 1807 38.1
Psat3g185080 Pisum sativum HOM05D006083 ORTHO05D007634 2.5e-283 979.9 1757 38.4
GSVIVG01016589001 Vitis vinifera HOM05D006083 ORTHO05D007634 9.1e-278 961.4 1791 38.7
Nn2g12936 Nelumbo nucifera HOM05D006083 ORTHO05D007634 2.9e-276 956.4 1845 37.1
Medtr7g024000 Medicago truncatula HOM05D006083 ORTHO05D007634 8.6e-276 954.9 1783 37.2
Ca_07227_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 9.5e-275 951.4 1773 37.6
Ciclev10030497m.g Citrus clementina HOM05D006083 ORTHO05D007634 7.3e-267 925.2 1768 37.5
PGR142G3850 Punica granatum HOM05D006083 ORTHO05D007634 2.0e-264 917.1 1764 36.7
Lalb_Chr04g0257841 Lupinus albus HOM05D006083 ORTHO05D007634 1.5e-259 901.0 1268 42.0
Lalb_Chr10g0091771 Lupinus albus HOM05D006083 ORTHO05D007634 3.3e-259 899.8 1270 41.8
TPR.G15506 Trifolium pratense HOM05D006083 ORTHO05D007634 9.8e-256 888.3 1292 40.8
Eucgr.G02918 Eucalyptus grandis HOM05D006083 ORTHO05D007634 8.3e-255 885.2 1801 36.3
vmacro07157 Vaccinium macrocarpon HOM05D006083 ORTHO05D007634 3.3e-251 873.2 2098 32.9
Sopen04g005570 Solanum pennellii HOM05D006083 ORTHO05D007634 7.3e-251 872.1 1785 36.5
THA.LOC104810174 Tarenaya hassleriana HOM05D006083 ORTHO05D007634 9.5e-251 871.7 1779 37.0
Lj1A934T60 Lonicera japonica HOM05D006083 ORTHO05D007634 7.1e-246 855.5 1314 40.8
Solyc04g011380.4 Solanum lycopersicum HOM05D006083 ORTHO05D007634 1.7e-244 850.9 1787 35.5
CAN.G786.23 Capsicum annuum HOM05D006083 ORTHO05D007634 4.7e-242 842.8 1804 35.6
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 4.0e-241 839.7 1737 35.7
Peaxi162Scf00060g00026 Petunia axillaris HOM05D006083 ORTHO05D007634 9.9e-240 835.1 1674 35.6
AL4G36990 Arabidopsis lyrata HOM05D006083 ORTHO05D007634 1.7e-236 824.3 1762 36.0
AT2G39580 Arabidopsis thaliana HOM05D006083 ORTHO05D007634 1.7e-236 824.3 1758 36.2
MBI14_g18543_MAGBIO Magnolia biondii HOM05D006083 ORTHO05D007634 6.6e-236 822.4 1880 34.1
TAR623G0128 Trochodendron aralioides HOM05D006083 ORTHO05D007634 6.2e-234 815.8 1684 36.3
Carub.0004s2165 Capsella rubella HOM05D006083 ORTHO05D007634 2.0e-232 810.8 1745 34.8
Aqoxy4G02985 Aquilegia oxysepala HOM05D006083 ORTHO05D007634 2.2e-231 807.4 1796 33.3
Sc06g0002680 Simmondsia chinensis HOM05D006083 ORTHO05D007634 9.3e-230 802.0 1268 40.3
Hund12547 Selenicereus undatus HOM05D006083 ORTHO05D007634 1.6e-226 791.2 1847 34.8
EL10Ac2g03425 Beta vulgaris HOM05D006083 ORTHO05D007634 2.1e-226 790.8 1798 34.9
Cc02_g08180 Coffea canephora HOM05D006083 ORTHO05D007634 6.2e-226 789.3 1757 35.1
DCAR_027665 Daucus carota HOM05D006083 ORTHO05D007634 8.4e-223 778.9 1865 33.0
CARHR134450 Cardamine hirsuta HOM05D006083 ORTHO05D007634 1.0e-220 771.9 1755 35.2
Thhalv10016135m.g Eutrema salsugineum HOM05D006083 ORTHO05D007634 2.3e-220 770.8 1768 34.4
CANSAT56G0880 Cannabis sativa HOM05D006083 ORTHO05D007634 5.3e-217 759.6 801 51.1
AUR62040954 Chenopodium quinoa HOM05D006083 ORTHO05D007634 1.3e-215 755.0 1780 34.3
Sp4g21870 Schrenkiella parvula HOM05D006083 ORTHO05D007634 1.7e-215 754.6 1760 34.5
Aa31LG5G20040 Aethionema arabicum HOM05D006083 ORTHO05D007634 7.9e-213 745.7 1759 33.9
FAN10G0925 Fragaria x ananassa HOM05D006083 ORTHO05D007634 3.0e-212 743.8 1507 37.2
Phvul.008G013732 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 3.4e-208 730.3 910 43.2
C04p67440 Brassica napus HOM05D006083 ORTHO05D007634 7.6e-208 729.2 1772 34.4
BolC4t28242H Brassica oleracea HOM05D006083 ORTHO05D007634 2.5e-206 724.2 1762 34.2
PSO339G3664 Papaver somniferum HOM05D006083 ORTHO05D007634 7.1e-206 722.6 1791 31.9
PSO384G3245 Papaver somniferum HOM05D006083 ORTHO05D007634 7.1e-206 722.6 1730 33.0
BraA04t18470Z Brassica rapa HOM05D006083 ORTHO05D007634 1.2e-205 721.8 1756 33.5
A04p30380 Brassica napus HOM05D006083 ORTHO05D007634 1.3e-204 718.4 1767 33.7
Oeu040905.3 Olea europaea HOM05D006083 ORTHO05D007634 8.7e-204 715.7 1304 36.7
AUR62038373 Chenopodium quinoa HOM05D006083 ORTHO05D007634 5.7e-203 713.0 1748 35.1
HanXRQChr09g0247731 Helianthus annuus HOM05D006083 ORTHO05D007634 2.2e-202 711.1 1801 32.9
SHI22592 Sapria himalayana HOM05D006083 ORTHO05D007634 4.5e-192 676.8 1794 31.4
Ca_29789_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 2.9e-191 674.1 766 47.5
Lsat_1_v5_gn_9_65161 Lactuca sativa HOM05D006083 ORTHO05D007634 3.9e-188 663.7 1737 32.5
RcHm_v2.0_Chr1g0366211 Rosa chinensis HOM05D006083 ORTHO05D007634 3.2e-182 644.0 640 52.3
Cpa.g.sc1.374 Carica papaya HOM05D006083 ORTHO05D007634 3.7e-178 630.6 676 49.9
TAR369G0895 Trochodendron aralioides HOM05D006083 ORTHO05D007634 1.0e-172 612.5 661 48.7
Nitab4.5_0005525g0010 Nicotiana tabacum HOM05D006083 ORTHO05D007634 1.1e-169 602.4 1785 30.6
CDE05G2458 Ceratophyllum demersum HOM05D006083 ORTHO05D007634 7.7e-160 569.7 1271 32.1
Zm00001eb028750 Zea mays HOM05D006083 ORTHO05D007634 3.8e-159 567.4 1685 30.1
ATR0559G184 Amborella trichopoda HOM05D006083 ORTHO05D007634 9.5e-158 562.8 1885 28.3
Nitab4.5_0003969g0020 Nicotiana tabacum HOM05D006083 ORTHO05D007634 3.3e-142 511.1 1380 34.1
SEGI_22945 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 3.9e-127 461.1 903 33.3
RcHm_v2.0_Chr1g0366201 Rosa chinensis HOM05D006083 ORTHO05D007634 6.4e-122 443.7 1142 34.3
FAN10G2882 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.8e-116 425.6 408 52.0
BcaB06g29099 Brassica carinata HOM05D006083 ORTHO05D007634 4.0e-92 344.7 1226 30.5
HPP92_018996 Vanilla planifolia HOM05D006083 ORTHO05D007634 7.6e-91 340.5 641 34.9
Peaxi162Scf00060g00126 Petunia axillaris HOM05D006083 ORTHO05D007634 8.4e-90 337.0 627 35.7
Mapoly0075s0039 Marchantia polymorpha HOM05D006083 ORTHO05D007634 3.2e-89 335.1 898 29.6
Cpa.g.sc1.375 Carica papaya HOM05D006083 ORTHO05D007634 1.4e-79 303.1 551 37.2
Os12g0566500 Oryza sativa ssp. japonica HOM05D006083 ORTHO05D007634 1.7e-74 286.2 441 36.3
SEGI_25206 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 2.0e-70 272.7 539 32.8
SMO367G1201 Selaginella moellendorffii HOM05D006083 ORTHO05D007634 2.4e-60 239.2 773 28.8
Pp3c6_12750 Physcomitrium patens HOM05D006083 ORTHO05D007634 5.3e-60 238.0 832 25.5
TAR369G0795 Trochodendron aralioides HOM05D006083 ORTHO05D007634 1.2e-56 226.9 759 31.2
AagrBONN_evm.TU.Sc2ySwM_228.2795 Anthoceros agrestis HOM05D000140 ORTHO05D007634 3.0e-55 222.2 634 29.7
Phvul.008G013666 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 1.0e-50 207.2 675 33.2
Actinidia07719 Actinidia chinensis HOM05D001446 ORTHO05D001360 6.5e-50 204.5 666 25.8
Ca_07226_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 1.6e-35 156.8 130 56.2
TPR.G40211 Trifolium pratense HOM05D006083 ORTHO05D007634 2.0e-30 139.8 348 35.6
Hund24433 Selenicereus undatus HOM05D006083 ORTHO05D007634 2.3e-26 126.3 796 26.0
Lalb_Chr10g0091761 Lupinus albus HOM05D006083 ORTHO05D007634 3.9e-26 125.6 409 34.7
Lalb_Chr04g0257831 Lupinus albus HOM05D006083 ORTHO05D007634 3.3e-25 122.5 365 35.3
Glyma.02G093802 Glycine max HOM05D006083 ORTHO05D007634 5.6e-25 121.7 131 43.5
Cpa.g.sc1.376 Carica papaya HOM05D006083 ORTHO05D007634 2.7e-19 102.8 433 29.3
HPP92_018997 Vanilla planifolia HOM05D006083 ORTHO05D007634 6.8e-15 88.2 121 46.3
ATR0618G162 Amborella trichopoda HOM05D006083 ORTHO05D007634 1.1e-12 80.9 92 43.5
AL7G29000 Arabidopsis lyrata HOM05D006083 ORTHO05D011291 1.9e-12 80.1 66 56.1
Oeu023787.1 Olea europaea HOM05D006083 ORTHO05D007634 1.6e-11 77.0 208 35.6
Ca_29897_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 4.6e-11 75.5 95 42.1
Lsat_1_v5_gn_7_4020 Lactuca sativa HOM05D006083 ORTHO05D007634 6.0e-11 75.1 58 65.5
Sc06g0002670 Simmondsia chinensis HOM05D006083 ORTHO05D007634 1.5e-09 70.5 366 29.5
AagrBONN_evm.TU.Sc2ySwM_228.2798 Anthoceros agrestis HOM05D006083 ORTHO05D007634 5.6e-09 68.6 93 49.5
MELO3C021657.2 Cucumis melo HOM05D000115 ORTHO05D003511 3.6e-08 65.9 96 49.0
RcHm_v2.0_Chr3g0492191 Rosa chinensis HOM05D006083 ORTHO05D007634 4.0e-07 62.4 220 34.1
ClCG09G019990 Citrullus lanatus HOM05D000115 ORTHO05D003511 1.2e-06 60.8 96 45.8


User provided reference genes

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