Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C025352.2 Cucumis melo HOM05D003689 ORTHO05D003950 5.3e-173 612.1 687 100.0
CsaV3_1G025520 Cucumis sativus L. HOM05D003689 ORTHO05D003950 3.1e-120 436.8 610 98.2
ClCG06G008630 Citrullus lanatus HOM05D003689 ORTHO05D003950 3.3e-106 390.2 610 94.4
Sed0017853 Sechium edule HOM05D003689 ORTHO05D003950 2.3e-83 314.3 617 83.5
GSVIVG01015378001 Vitis vinifera HOM05D003689 ORTHO05D003950 9.8e-42 176.0 241 71.4
Dinv41614 Davidia involucrata HOM05D003689 ORTHO05D003950 3.1e-40 171.0 232 72.8
Gorai.010G072200 Gossypium raimondii HOM05D003689 ORTHO05D003950 5.9e-39 166.8 232 69.4
Gohir.D06G062000 Gossypium hirsutum HOM05D003689 ORTHO05D003950 7.7e-39 166.4 232 70.3
Gohir.A06G063300 Gossypium hirsutum HOM05D003689 ORTHO05D003950 1.0e-38 166.0 232 70.3
Hma1.2p1_1151F.1_g262016 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 3.8e-38 164.1 232 70.3
Thecc.09G108800 Theobroma cacao HOM05D003689 ORTHO05D003950 4.3e-37 160.6 230 70.0
RcHm_v2.0_Chr2g0090251 Rosa chinensis HOM05D003689 ORTHO05D003950 1.2e-36 159.1 229 72.1
Ciclev10007776m.g Citrus clementina HOM05D003689 ORTHO05D003950 2.8e-36 157.9 229 66.8
Eucgr.C03818 Eucalyptus grandis HOM05D003689 ORTHO05D003950 2.3e-35 154.8 230 70.4
Cc06_g09790 Coffea canephora HOM05D003689 ORTHO05D003950 4.0e-35 154.1 228 68.4
FvH4_1g04540 Fragaria vesca HOM05D003689 ORTHO05D003950 4.0e-35 154.1 229 70.7
Glyma.08G038200 Glycine max HOM05D003689 ORTHO05D003950 4.0e-35 154.1 229 68.1
Cfa003251 Carpinus fangiana HOM05D003689 ORTHO05D003950 6.8e-35 153.3 230 69.6
FAN28G1273 Fragaria x ananassa HOM05D003689 ORTHO05D003950 3.4e-34 151.0 229 70.7
Haze_25759 Corylus avellana HOM05D003689 ORTHO05D003950 5.7e-34 150.2 222 71.6
FAN26G3272 Fragaria x ananassa HOM05D003689 ORTHO05D003950 1.3e-33 149.1 229 70.7
CANSAT56G1603 Cannabis sativa HOM05D003689 ORTHO05D003950 6.4e-33 146.7 230 67.0
CANSAT56G4471 Cannabis sativa HOM05D003689 ORTHO05D003950 6.4e-33 146.7 230 67.0
Hma1.2p1_3266F.1_g334670 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 6.4e-33 146.7 204 73.0
THA.LOC104811116 Tarenaya hassleriana HOM05D003689 ORTHO05D003950 1.4e-32 145.6 231 66.2
VMungo0331G0581 Vigna mungo HOM05D003689 ORTHO05D003950 3.2e-32 144.4 204 72.1
Glyma.05G230700 Glycine max HOM05D003689 ORTHO05D003950 5.4e-32 143.7 232 65.5
MD08G1118600 Malus domestica HOM05D003689 ORTHO05D003950 5.4e-32 143.7 234 64.5
Manes.03G021600 Manihot esculenta HOM05D003689 ORTHO05D003950 7.0e-32 143.3 229 65.9
Nitab4.5_0004562g0020 Nicotiana tabacum HOM05D003689 ORTHO05D003950 3.5e-31 141.0 224 68.8
Lalb_Chr05g0222931 Lupinus albus HOM05D003689 ORTHO05D003950 4.6e-31 140.6 230 37.0
QL12p026389 Quercus lobata HOM05D003689 ORTHO05D003950 7.8e-31 139.8 223 65.9
Ciclev10007728m.g Citrus clementina HOM05D003689 ORTHO05D003950 1.0e-30 139.4 223 67.3
MD15G1183500 Malus domestica HOM05D003689 ORTHO05D003950 1.3e-30 139.0 196 74.0
FAN23G2461 Fragaria x ananassa HOM05D003689 ORTHO05D003950 1.7e-30 138.7 208 72.6
arahy.Tifrunner.gnm1.ann1.3U27PV Arachis hypogaea HOM05D003689 ORTHO05D003950 3.0e-30 137.9 236 67.4
Lj7A652T76 Lonicera japonica HOM05D003689 ORTHO05D003950 3.0e-30 137.9 241 63.1
Rhsim01G0097100 Rhododendron simsii HOM05D003689 ORTHO05D003950 3.0e-30 137.9 232 61.2
arahy.Tifrunner.gnm1.ann1.SBHH31 Arachis hypogaea HOM05D003689 ORTHO05D003950 6.6e-30 136.7 236 66.9
Nitab4.5_0000114g0090 Nicotiana tabacum HOM05D003689 ORTHO05D003950 6.6e-30 136.7 226 66.4
arahy.Tifrunner.gnm1.ann1.EDC6ME Arachis hypogaea HOM05D003689 ORTHO05D003950 8.6e-30 136.3 204 73.0
arahy.Tifrunner.gnm1.ann1.K2CPZ4 Arachis hypogaea HOM05D003689 ORTHO05D003950 8.6e-30 136.3 204 73.0
Cfa013343 Carpinus fangiana HOM05D003689 ORTHO05D003950 8.6e-30 136.3 223 65.0
Haze_21848 Corylus avellana HOM05D003689 ORTHO05D003950 1.5e-29 135.6 223 65.0
Prupe.7G232600 Prunus persica HOM05D003689 ORTHO05D003950 1.5e-29 135.6 213 70.9
Peaxi162Scf00231g00023 Petunia axillaris HOM05D003689 ORTHO05D003950 2.5e-29 134.8 207 72.0
Sabra18G0068800 Salix brachista HOM05D003689 ORTHO05D003950 2.5e-29 134.8 114 59.6
FvH4_2g36130 Fragaria vesca HOM05D003689 ORTHO05D003950 3.3e-29 134.4 203 69.0
FAN15G3321 Fragaria x ananassa HOM05D003689 ORTHO05D003950 3.3e-29 134.4 203 69.5
PSO210G7239 Papaver somniferum HOM05D003689 ORTHO05D003950 3.3e-29 134.4 203 67.5
Thecc.09G039700 Theobroma cacao HOM05D003689 ORTHO05D003950 3.3e-29 134.4 193 70.5
CAN.G238.2 Capsicum annuum HOM05D003689 ORTHO05D003950 4.3e-29 134.0 222 68.0
COL.COLO4_34846 Corchorus olitorius HOM05D001279 ORTHO05D001636 4.3e-29 134.0 115 59.1
TAR624G0802 Trochodendron aralioides HOM05D003689 ORTHO05D003950 5.6e-29 133.7 227 67.4
Lalb_Chr16g0388171 Lupinus albus HOM05D003689 ORTHO05D003950 9.5e-29 132.9 229 65.5
Prupe.1G452700 Prunus persica HOM05D003689 ORTHO05D003950 9.5e-29 132.9 201 70.1
FAN20G2410 Fragaria x ananassa HOM05D003689 ORTHO05D003950 1.2e-28 132.5 203 68.5
FAN27G3406 Fragaria x ananassa HOM05D003689 ORTHO05D003950 1.6e-28 132.1 203 68.5
PSO210G3978 Papaver somniferum HOM05D003689 ORTHO05D003950 1.6e-28 132.1 203 66.5
Phvul.010G165600 Phaseolus vulgaris HOM05D003689 ORTHO05D003950 2.1e-28 131.7 229 62.9
CSS0006196 Camellia sinensis var. sinensis HOM05D003689 ORTHO05D003950 3.6e-28 131.0 250 61.2
Duzib150G1680 Durio zibethinus HOM05D003689 ORTHO05D003950 6.2e-28 130.2 230 63.5
RcHm_v2.0_Chr6g0305741 Rosa chinensis HOM05D003689 ORTHO05D003950 6.2e-28 130.2 203 68.5
CiPaw.07G207300 Carya illinoinensis HOM05D003689 ORTHO05D003950 1.8e-27 128.6 243 58.8
Cc00_g17700 Coffea canephora HOM05D003689 ORTHO05D003950 1.8e-27 128.6 221 64.7
GSVIVG01035672001 Vitis vinifera HOM05D003689 ORTHO05D003950 1.8e-27 128.6 228 63.2
Manes.16G066100 Manihot esculenta HOM05D003689 ORTHO05D003950 2.3e-27 128.3 203 68.0
Sabra18G0038000 Salix brachista HOM05D003689 ORTHO05D003950 6.8e-27 126.7 202 67.3
Potri.018G081700 Populus trichocarpa HOM05D003689 ORTHO05D003950 1.5e-26 125.6 114 57.0
CDE02G3880 Ceratophyllum demersum HOM05D003689 ORTHO05D003950 2.0e-26 125.2 204 64.7
Nitab4.5_0000052g0100 Nicotiana tabacum HOM05D003689 ORTHO05D003950 2.6e-26 124.8 222 64.0
TWI63G0545 Tripterygium wilfordii HOM05D003689 ORTHO05D003950 2.6e-26 124.8 188 74.5
CSS0016195 Camellia sinensis var. sinensis HOM05D003689 ORTHO05D003950 5.8e-26 123.6 92 64.1
ClCG11G014000 Citrullus lanatus HOM05D008234 ORTHO05D010422 5.8e-26 123.6 192 49.5
Lalb_Chr14g0371561 Lupinus albus HOM05D003689 ORTHO05D003950 5.8e-26 123.6 205 69.8
DCAR_004497 Daucus carota HOM05D003689 ORTHO05D003950 1.3e-25 122.5 185 48.1
Nitab4.5_0003338g0050 Nicotiana tabacum HOM05D003689 ORTHO05D003950 1.3e-25 122.5 185 69.2
PGSC0003DMG400024327 Solanum tuberosum HOM05D003689 ORTHO05D003950 1.3e-25 122.5 212 69.8
PGR102G1523 Punica granatum HOM05D003689 ORTHO05D003950 2.2e-25 121.7 230 62.6
Glyma.14G141800 Glycine max HOM05D003689 ORTHO05D003950 3.7e-25 120.9 203 60.6
MELO3C003585.2 Cucumis melo HOM05D003689 ORTHO05D003950 4.1e-24 117.5 192 52.6
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 5.4e-24 117.1 245 31.8
Sp6g23340 Schrenkiella parvula HOM05D000055 ORTHO05D003950 5.4e-24 117.1 197 69.0
Carub.0006s1949 Capsella rubella HOM05D000055 ORTHO05D003950 7.0e-24 116.7 195 69.2
Hma1.2p1_0140F.1_g063530 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 7.0e-24 116.7 243 60.9
QL02p044325 Quercus lobata HOM05D003689 ORTHO05D003950 7.0e-24 116.7 92 63.0
Sopen07g016320 Solanum pennellii HOM05D003689 ORTHO05D003950 7.0e-24 116.7 203 68.5
TAR383G0867 Trochodendron aralioides HOM05D006226 ORTHO05D007738 7.0e-24 116.7 177 75.1
HanXRQChr06g0180011 Helianthus annuus HOM05D003689 ORTHO05D003950 9.2e-24 116.3 233 61.8
Sc18g0001340 Simmondsia chinensis HOM05D003689 ORTHO05D003950 9.2e-24 116.3 229 57.2
CDE04G3773 Ceratophyllum demersum HOM05D003689 ORTHO05D003950 1.2e-23 115.9 224 32.1
Thhalv10012659m.g Eutrema salsugineum HOM05D000055 ORTHO05D003950 1.2e-23 115.9 185 70.8
Lj4g0026082 Lotus japonicus HOM05D003689 ORTHO05D003950 1.2e-23 115.9 108 58.3
QL02p045402 Quercus lobata HOM05D003689 ORTHO05D003950 1.2e-23 115.9 79 70.9
AL6G32800 Arabidopsis lyrata HOM05D000055 ORTHO05D003950 2.7e-23 114.8 185 71.4
AT5G21222 Arabidopsis thaliana HOM05D000055 ORTHO05D003950 2.7e-23 114.8 185 70.3
CARHR191690 Cardamine hirsuta HOM05D000055 ORTHO05D003950 4.6e-23 114.0 185 71.4
arahy.Tifrunner.gnm1.ann1.WWE821 Arachis hypogaea HOM05D003689 ORTHO05D003950 7.8e-23 113.2 233 55.4
Potri.018G037200 Populus trichocarpa HOM05D003689 ORTHO05D003950 1.0e-22 112.8 202 64.4
Actinidia32678 Actinidia chinensis HOM05D003689 ORTHO05D003950 1.7e-22 112.1 123 50.4
Actinidia31220 Actinidia chinensis HOM05D003689 ORTHO05D003950 2.3e-22 111.7 245 58.4
arahy.Tifrunner.gnm1.ann1.6C9669 Arachis hypogaea HOM05D003689 ORTHO05D003950 2.3e-22 111.7 233 54.5
C09p54880 Brassica napus HOM05D000055 ORTHO05D003950 2.3e-22 111.7 185 70.3
BolC9t58349H Brassica oleracea HOM05D000055 ORTHO05D003950 2.3e-22 111.7 185 70.3
AL6G37510 Arabidopsis lyrata HOM05D003689 ORTHO05D003950 3.9e-22 110.9 198 60.6
BcaC04g23586 Brassica carinata HOM05D003689 ORTHO05D003950 5.0e-22 110.5 214 59.3
Aqoxy7G03846 Aquilegia oxysepala HOM05D003689 ORTHO05D003950 6.6e-22 110.2 192 70.8
Carub.0006s2350 Capsella rubella HOM05D003689 ORTHO05D003950 6.6e-22 110.2 200 35.0
C09p06740 Brassica napus HOM05D003689 ORTHO05D003950 8.6e-22 109.8 214 59.3
BolC9t53595H Brassica oleracea HOM05D003689 ORTHO05D003950 8.6e-22 109.8 214 59.3
CARHR187690 Cardamine hirsuta HOM05D003689 ORTHO05D003950 8.6e-22 109.8 198 34.3
A10p18880 Brassica napus HOM05D000055 ORTHO05D003950 1.1e-21 109.4 197 67.5
BraA10t43967Z Brassica rapa HOM05D000055 ORTHO05D003950 1.1e-21 109.4 197 67.5
Thhalv10003915m.g Eutrema salsugineum HOM05D003689 ORTHO05D003950 1.1e-21 109.4 199 41.2
Lsat_1_v5_gn_8_95421 Lactuca sativa HOM05D003689 ORTHO05D003950 1.1e-21 109.4 234 61.5
A09p06120 Brassica napus HOM05D003689 ORTHO05D003950 1.5e-21 109.0 214 58.9
BraA09t36253Z Brassica rapa HOM05D003689 ORTHO05D003950 1.5e-21 109.0 214 58.9
Ca_12812_v3 Cicer arietinum L. HOM05D003689 ORTHO05D003950 1.5e-21 109.0 245 55.5
Hund09215 Selenicereus undatus HOM05D003689 ORTHO05D003950 2.5e-21 108.2 187 64.2
Migut.J01154 Erythranthe guttata HOM05D003689 ORTHO05D003950 3.3e-21 107.8 81 64.2
Gohir.A08G250800 Gossypium hirsutum HOM05D003689 ORTHO05D003950 4.3e-21 107.5 193 66.3
Aa31LG1G13560 Aethionema arabicum HOM05D000055 ORTHO05D003950 5.6e-21 107.1 183 68.3
BcaB04g19771 Brassica carinata HOM05D003689 ORTHO05D003950 5.6e-21 107.1 187 40.6
Actinidia32677 Actinidia chinensis HOM05D001279 ORTHO05D003950 7.3e-21 106.7 105 54.3
arahy.Tifrunner.gnm1.ann1.Z43HYI Arachis hypogaea HOM05D003689 ORTHO05D003950 7.3e-21 106.7 166 78.9
Ca_17333_v3 Cicer arietinum L. HOM05D003689 ORTHO05D003950 7.3e-21 106.7 166 78.3
MBI04_g29969_MAGBIO Magnolia biondii HOM05D003689 ORTHO05D003950 9.5e-21 106.3 204 63.7
Sc23g0005900 Simmondsia chinensis HOM05D003689 ORTHO05D003950 1.6e-20 105.5 204 65.2
MSTRG.6008 Avicennia marina HOM05D003689 ORTHO05D003950 2.8e-20 104.8 97 54.6
SGA_v2.0_scaffold163G38088 Striga asiatica HOM05D003689 ORTHO05D003950 2.8e-20 104.8 185 65.9
Gohir.D08G272300 Gossypium hirsutum HOM05D003689 ORTHO05D003950 3.6e-20 104.4 193 65.8
Gorai.004G290700 Gossypium raimondii HOM05D003689 ORTHO05D003950 3.6e-20 104.4 193 65.8
Lalb_Chr14g0362401 Lupinus albus HOM05D003689 ORTHO05D003950 4.7e-20 104.0 204 63.2
Medtr1g008310 Medicago truncatula HOM05D003689 ORTHO05D003950 8.1e-20 103.2 245 28.2
EL10Ac2g04074 Beta vulgaris HOM05D003689 ORTHO05D003950 1.4e-19 102.4 186 48.9
CAN.G797.4 Capsicum annuum HOM05D003689 ORTHO05D003950 3.1e-19 101.3 242 57.4
Sopen08g022090 Solanum pennellii HOM05D003689 ORTHO05D003950 8.9e-19 99.8 187 63.1
PGSC0003DMG400014513 Solanum tuberosum HOM05D003689 ORTHO05D003950 8.9e-19 99.8 187 63.1
Oeu002241.1 Olea europaea HOM05D003689 ORTHO05D003950 1.2e-18 99.4 165 69.1
Solyc08g068230.4 Solanum lycopersicum HOM05D003689 ORTHO05D003950 1.2e-18 99.4 187 63.6
DCAR_012069 Daucus carota HOM05D001279 ORTHO05D001636 1.5e-18 99.0 166 74.7
BcaB06g28622 Brassica carinata HOM05D000888 ORTHO05D000740 2.0e-18 98.6 185 33.0
Peaxi162Scf00523g00624 Petunia axillaris HOM05D003689 ORTHO05D003950 2.0e-18 98.6 73 61.6
TWI34G0694 Tripterygium wilfordii HOM05D003689 ORTHO05D003950 4.4e-18 97.4 98 54.1
Medtr8g103480 Medicago truncatula HOM05D003689 ORTHO05D003950 5.8e-18 97.1 204 62.7
BcaC04g19516 Brassica carinata HOM05D000055 ORTHO05D000057 9.8e-18 96.3 73 58.9
AUR62009331 Chenopodium quinoa HOM05D003689 ORTHO05D003950 9.8e-18 96.3 185 51.4
MSTRG.14008 Avicennia marina HOM05D003689 ORTHO05D003950 1.3e-17 95.9 185 65.9
THA.LOC104799204 Tarenaya hassleriana HOM05D003689 ORTHO05D003950 1.3e-17 95.9 187 56.7
Solyc07g032380.4 Solanum lycopersicum HOM05D003689 ORTHO05D003950 1.7e-17 95.5 79 62.0
AUR62023017 Chenopodium quinoa HOM05D003689 ORTHO05D003950 3.7e-17 94.4 185 52.4
PGR044G1205 Punica granatum HOM05D003689 ORTHO05D003950 3.7e-17 94.4 167 71.9
Duzib187G1779 Durio zibethinus HOM05D003689 ORTHO05D003950 1.1e-16 92.8 193 63.7
CsaV3_1G025530 Cucumis sativus L. HOM05D003689 ORTHO05D045038 1.4e-16 92.4 61 78.7
Sed0002455 Sechium edule HOM05D003689 ORTHO05D003950 1.9e-16 92.0 192 64.1
Eucgr.C02891 Eucalyptus grandis HOM05D003689 ORTHO05D003950 3.2e-16 91.3 167 73.1
ECA238G3870 Erigeron canadensis HOM05D003689 ORTHO05D009814 4.1e-16 90.9 224 60.3
Ah.16g105250 Amaranthus hybridus HOM05D003689 ORTHO05D003950 5.4e-16 90.5 185 44.9
Atru.chr7.2161 Acer truncatum HOM05D003689 ORTHO05D003950 9.2e-16 89.7 178 65.2
ATR0315G024 Amborella trichopoda HOM05D003689 ORTHO05D003950 6.0e-15 87.0 83 49.4
Psat0s586g0040 Pisum sativum HOM05D003689 ORTHO05D003950 7.8e-15 86.7 70 60.0
Zm00001eb315460 Zea mays HOM05D003689 ORTHO05D003950 3.0e-14 84.7 193 27.5
Ah.14g082150 Amaranthus hybridus HOM05D003689 ORTHO05D003950 3.9e-14 84.3 225 53.8
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 3.3e-13 81.3 168 30.4
AUR62021489 Chenopodium quinoa HOM05D003689 ORTHO05D003950 9.5e-13 79.7 201 59.7
EL10Ac8g18479 Beta vulgaris HOM05D003689 ORTHO05D003950 1.6e-12 79.0 229 52.4
AUR62010979 Chenopodium quinoa HOM05D003689 ORTHO05D003950 6.2e-12 77.0 185 62.2
SGA_v2.0_scaffold163G38089 Striga asiatica HOM05D003689 ORTHO05D003950 1.4e-11 75.9 73 46.6
vmacro20709 Vaccinium macrocarpon HOM05D003689 ORTHO05D003950 1.8e-11 75.5 157 33.1
EL10Ac8g18465 Beta vulgaris HOM05D003689 ORTHO05D003950 9.9e-10 69.7 203 59.6
EL10Ac8g18466 Beta vulgaris HOM05D003689 ORTHO05D003950 9.9e-10 69.7 203 59.6
Os01g0228400 Oryza sativa ssp. japonica HOM05D003689 ORTHO05D003950 4.9e-09 67.4 90 40.0
EL10Ac8g18473 Beta vulgaris HOM05D003689 ORTHO05D003950 1.1e-08 66.2 70 47.1
Nn7g35992 Nelumbo nucifera HOM05D003689 ORTHO05D003950 2.4e-08 65.1 43 67.4
Sed0019331 Sechium edule HOM05D003689 ORTHO05D045038 7.1e-08 63.5 60 61.7
EL10Ac8g18468 Beta vulgaris HOM05D003689 ORTHO05D003950 9.2e-08 63.2 160 30.0
MD02G1045100 Malus domestica HOM05D003689 ORTHO05D003950 2.7e-07 61.6 49 59.2
Cpa.g.sc78.82 Carica papaya HOM05D003689 ORTHO05D003950 4.6e-07 60.8 43 60.5
Lj8A603G55 Lonicera japonica HOM05D003689 ORTHO05D003950 1.0e-06 59.7 109 33.9
Migut.E01508 Erythranthe guttata HOM05D003689 ORTHO05D003950 2.3e-06 58.5 41 61.0
Lj8C603T17 Lonicera japonica HOM05D003689 ORTHO05D003950 2.3e-06 58.5 65 43.1


User provided reference genes

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