Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C025346.2 Cucumis melo HOM05D005548 ORTHO05D007497 6.0e-256 887.1 482 100.0
CsaV3_1G024240 Cucumis sativus L. HOM05D005548 ORTHO05D007497 6.5e-242 840.5 506 88.7
ClCG00G004520 Citrullus lanatus HOM05D005548 ORTHO05D007497 4.4e-230 801.2 482 87.8
Sed0013441 Sechium edule HOM05D005548 ORTHO05D007497 1.5e-214 749.6 480 82.1
Thecc.09G109700 Theobroma cacao HOM05D005548 ORTHO05D007497 5.4e-188 661.4 485 71.5
Haze_25723 Corylus avellana HOM05D005548 ORTHO05D007497 1.2e-184 650.2 487 71.9
Haze_25730 Corylus avellana HOM05D005548 ORTHO05D007497 4.7e-184 648.3 487 71.7
Eucgr.C01037 Eucalyptus grandis HOM05D005548 ORTHO05D007497 5.2e-183 644.8 485 69.7
QL02p085206 Quercus lobata HOM05D005548 ORTHO05D007497 1.2e-182 643.7 404 79.5
GSVIVG01015386001 Vitis vinifera HOM05D005548 ORTHO05D007497 5.8e-182 641.3 444 73.2
Cpa.g.sc23.102 Carica papaya HOM05D005548 ORTHO05D007497 3.7e-181 638.6 403 77.7
Dinv36636 Davidia involucrata HOM05D005548 ORTHO05D007497 8.3e-181 637.5 402 79.4
Hma1.2p1_0518F.1_g171060 Hydrangea macrophylla HOM05D005548 ORTHO05D007497 1.4e-180 636.7 407 77.6
Cfa021563 Carpinus fangiana HOM05D005548 ORTHO05D007497 1.9e-180 636.3 487 69.8
Duzib168G0181 Durio zibethinus HOM05D005548 ORTHO05D007497 7.0e-180 634.4 485 68.5
PGR142G0895 Punica granatum HOM05D005548 ORTHO05D007497 1.2e-179 633.6 405 77.3
Gohir.A07G006100 Gossypium hirsutum HOM05D005548 ORTHO05D007497 3.5e-179 632.1 386 81.3
arahy.Tifrunner.gnm1.ann1.HQIA7A Arachis hypogaea HOM05D005548 ORTHO05D007497 6.0e-179 631.3 493 68.4
CiPaw.04G163600 Carya illinoinensis HOM05D005548 ORTHO05D007497 1.0e-178 630.6 398 79.1
Gohir.D07G005900 Gossypium hirsutum HOM05D005548 ORTHO05D007497 1.3e-178 630.2 386 81.1
Actinidia09420 Actinidia chinensis HOM05D005548 ORTHO05D007497 2.3e-178 629.4 446 71.5
TAR383G0243 Trochodendron aralioides HOM05D005548 ORTHO05D007497 6.6e-178 627.9 398 77.1
Gorai.001G005500 Gossypium raimondii HOM05D005548 ORTHO05D007497 1.9e-177 626.3 386 80.6
Lj2g0015861 Lotus japonicus HOM05D005548 ORTHO05D007497 2.5e-177 625.9 399 76.4
VMungo0464G1126 Vigna mungo HOM05D005548 ORTHO05D007497 4.3e-177 625.2 400 76.5
Dinv41607 Davidia involucrata HOM05D005548 ORTHO05D007497 7.3e-177 624.4 489 68.5
THA.LOC104811114 Tarenaya hassleriana HOM05D005548 ORTHO05D007497 9.5e-177 624.0 407 76.4
Glyma.09G191000 Glycine max HOM05D005548 ORTHO05D007497 1.6e-176 623.2 439 70.6
Nn2g11732 Nelumbo nucifera HOM05D005548 ORTHO05D007497 2.1e-176 622.9 401 76.3
Potri.018G080900 Populus trichocarpa HOM05D005548 ORTHO05D007497 2.1e-176 622.9 484 68.2
Glyma.07G085900 Glycine max HOM05D005548 ORTHO05D007497 2.8e-176 622.5 439 70.6
CSS0001162 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 3.6e-176 622.1 473 69.8
MBI04_g22012_MAGBIO Magnolia biondii HOM05D005548 ORTHO05D007497 2.3e-175 619.4 489 67.9
Phvul.004G163700 Phaseolus vulgaris HOM05D005548 ORTHO05D007497 3.1e-175 619.0 400 76.0
Sabra18G0068100 Salix brachista HOM05D005548 ORTHO05D007497 3.4e-174 615.5 480 69.0
Manes.03G021300 Manihot esculenta HOM05D005548 ORTHO05D007497 4.4e-174 615.1 485 67.6
CSS0009071 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 9.9e-174 614.0 418 74.2
PGSC0003DMG400000312 Solanum tuberosum HOM05D005548 ORTHO05D007497 1.7e-173 613.2 441 70.7
COL.COLO4_34874 Corchorus olitorius HOM05D005548 ORTHO05D007497 4.9e-173 611.7 374 80.2
DCAR_010452 Daucus carota HOM05D005548 ORTHO05D007497 6.4e-173 611.3 393 75.3
Sopen12g003070 Solanum pennellii HOM05D005548 ORTHO05D007497 1.4e-172 610.1 441 70.3
Solyc12g007090.2 Solanum lycopersicum HOM05D005548 ORTHO05D007497 3.2e-172 609.0 441 70.3
TWI63G0439 Tripterygium wilfordii HOM05D005548 ORTHO05D007497 3.2e-172 609.0 403 75.2
EL10Ac8g18489 Beta vulgaris HOM05D005548 ORTHO05D007497 1.6e-171 606.7 479 66.4
CAN.G1529.9 Capsicum annuum HOM05D005548 ORTHO05D007497 1.6e-171 606.7 439 70.6
Cc06_g09710 Coffea canephora HOM05D005548 ORTHO05D007497 1.6e-171 606.7 399 76.4
MD02G1046200 Malus domestica HOM05D005548 ORTHO05D007497 2.1e-171 606.3 395 76.7
Nitab4.5_0005947g0010 Nicotiana tabacum HOM05D005548 ORTHO05D007497 3.5e-171 605.5 489 67.3
Atru.chr7.1357 Acer truncatum HOM05D005548 ORTHO05D007497 1.7e-170 603.2 381 79.0
Ca_03976_v3 Cicer arietinum L. HOM05D005548 ORTHO05D007497 2.3e-170 602.8 404 74.5
Lalb_Chr14g0371531 Lupinus albus HOM05D005548 ORTHO05D007497 3.9e-170 602.1 444 69.8
Prupe.7G231800 Prunus persica HOM05D005548 ORTHO05D007497 3.9e-170 602.1 482 67.2
Actinidia20374 Actinidia chinensis HOM05D005548 ORTHO05D007497 5.1e-170 601.7 381 76.9
Lsat_1_v5_gn_8_95001 Lactuca sativa HOM05D005548 ORTHO05D007497 1.1e-169 600.5 392 74.5
RcHm_v2.0_Chr2g0090331 Rosa chinensis HOM05D005548 ORTHO05D007497 5.6e-169 598.2 399 74.9
FAN19G0123 Fragaria x ananassa HOM05D005548 ORTHO05D007497 7.3e-169 597.8 399 74.7
FvH4_1g04721 Fragaria vesca HOM05D005548 ORTHO05D007497 1.6e-168 596.7 399 74.7
Hund26198 Selenicereus undatus HOM05D005548 ORTHO05D007497 2.1e-168 596.3 392 74.5
MSTRG.26421 Avicennia marina HOM05D005548 ORTHO05D007497 2.8e-168 595.9 396 74.0
Lalb_Chr22g0352791 Lupinus albus HOM05D005548 ORTHO05D007497 1.8e-167 593.2 391 75.4
Migut.K00455 Erythranthe guttata HOM05D005548 ORTHO05D007497 1.2e-166 590.5 391 75.4
HanXRQChr06g0179971 Helianthus annuus HOM05D005548 ORTHO05D007497 1.2e-166 590.5 391 73.1
Peaxi162Scf00546g00024 Petunia axillaris HOM05D005548 ORTHO05D007497 4.4e-166 588.6 396 74.7
SalBow1G6148 Salvia bowleyana HOM05D005548 ORTHO05D007497 4.4e-166 588.6 425 71.1
Sc18g0001240 Simmondsia chinensis HOM05D005548 ORTHO05D007497 5.8e-166 588.2 399 71.7
FAN26G0240 Fragaria x ananassa HOM05D005548 ORTHO05D007497 7.6e-166 587.8 399 74.2
Lj7C651T8 Lonicera japonica HOM05D005548 ORTHO05D007497 7.6e-166 587.8 441 68.3
Medtr6g088460 Medicago truncatula HOM05D005548 ORTHO05D007497 9.9e-166 587.4 432 68.1
TPR.G18453 Trifolium pratense HOM05D005548 ORTHO05D007497 1.3e-165 587.0 394 74.1
FAN23G0305 Fragaria x ananassa HOM05D005548 ORTHO05D007497 4.9e-165 585.1 399 73.9
Aqoxy7G01651 Aquilegia oxysepala HOM05D005548 ORTHO05D007497 2.1e-163 579.7 390 72.3
PSO832G1226 Papaver somniferum HOM05D005548 ORTHO05D007497 2.1e-163 579.7 431 66.8
AUR62010987 Chenopodium quinoa HOM05D005548 ORTHO05D007497 1.0e-162 577.4 374 75.4
PSO782G1908 Papaver somniferum HOM05D005548 ORTHO05D007497 1.3e-162 577.0 436 66.7
Sp6g24840 Schrenkiella parvula HOM05D005548 ORTHO05D007497 6.6e-162 574.7 411 69.3
CARHR193360 Cardamine hirsuta HOM05D005548 ORTHO05D007497 1.5e-161 573.5 406 69.7
AL6G31050 Arabidopsis lyrata HOM05D005548 ORTHO05D007497 2.5e-161 572.8 399 70.7
BcaB05g23389 Brassica carinata HOM05D005548 ORTHO05D007497 3.3e-161 572.4 408 69.4
ECA233G4048 Erigeron canadensis HOM05D005548 ORTHO05D007497 7.3e-161 571.2 378 73.8
Psat1g042920 Pisum sativum HOM05D005548 ORTHO05D007497 9.6e-161 570.9 403 70.5
AT5G19540 Arabidopsis thaliana HOM05D005548 ORTHO05D007497 1.2e-160 570.5 406 70.0
Thhalv10013469m.g Eutrema salsugineum HOM05D005548 ORTHO05D007497 1.2e-160 570.5 408 69.1
Carub.0006s1789 Capsella rubella HOM05D005548 ORTHO05D007497 3.6e-160 568.9 406 69.7
ATR0315G003 Amborella trichopoda HOM05D005548 ORTHO05D007497 6.2e-160 568.2 391 72.4
A02p05630 Brassica napus HOM05D005548 ORTHO05D007497 6.9e-159 564.7 408 68.6
BolC2t06964H Brassica oleracea HOM05D005548 ORTHO05D007497 6.9e-159 564.7 409 69.4
BraA02t05515Z Brassica rapa HOM05D005548 ORTHO05D007497 6.9e-159 564.7 408 68.6
BcaC03g13685 Brassica carinata HOM05D005548 ORTHO05D007497 1.2e-158 563.9 409 69.2
BNapus_Darmor_BZH_scaffold_38p02320 Brassica napus HOM05D005548 ORTHO05D007497 1.2e-158 563.9 409 69.2
unitig_899.g15439 Utricularia gibba HOM05D005548 ORTHO05D007497 2.6e-158 562.8 390 71.3
MD15G1184300 Malus domestica HOM05D005548 ORTHO05D007497 9.9e-158 560.8 487 63.4
CDE02G3701 Ceratophyllum demersum HOM05D005548 ORTHO05D007497 4.9e-157 558.5 394 70.8
Nitab4.5_0002904g0080 Nicotiana tabacum HOM05D005548 ORTHO05D007497 4.9e-157 558.5 489 64.2
SGA_v2.0_scaffold307G48040 Striga asiatica HOM05D005548 ORTHO05D007497 1.1e-156 557.4 396 69.7
Aa31LG4G18070 Aethionema arabicum HOM05D005548 ORTHO05D007497 2.1e-155 553.1 407 69.0
Duzib150G0071 Durio zibethinus HOM05D005548 ORTHO05D007497 1.0e-154 550.8 478 63.2
vmacro20704 Vaccinium macrocarpon HOM05D005548 ORTHO05D007497 9.6e-145 517.7 391 65.7
Hma1.2p1_0518F.1_g171070 Hydrangea macrophylla HOM05D005548 ORTHO05D007497 1.1e-143 514.2 315 79.7
Zm00001eb042080 Zea mays HOM05D005548 ORTHO05D007497 6.0e-139 498.4 400 62.2
SalBow1G2309 Salvia bowleyana HOM05D005548 ORTHO05D007497 2.3e-138 496.5 345 73.6
Os08g0387500 Oryza sativa ssp. japonica HOM05D005548 ORTHO05D007497 9.6e-137 491.1 388 61.9
Rhsim01G0095300 Rhododendron simsii HOM05D005548 ORTHO05D007497 4.8e-136 488.8 450 55.6
FAN28G1005 Fragaria x ananassa HOM05D005548 ORTHO05D007497 2.2e-133 479.9 327 75.2
HPP92_019989 Vanilla planifolia HOM05D005548 ORTHO05D004628 2.0e-113 413.7 354 59.3
Mapoly0115s0052 Marchantia polymorpha HOM05D005548 ORTHO05D007497 3.0e-106 389.8 383 52.5
Pp3c17_15530 Physcomitrium patens HOM05D005548 ORTHO05D007497 7.0e-103 378.6 371 52.8
AUR62021496 Chenopodium quinoa HOM05D005548 ORTHO05D007497 5.9e-102 375.6 259 73.0
AagrBONN_evm.TU.Sc2ySwM_344.3922 Anthoceros agrestis HOM05D005548 ORTHO05D007497 2.9e-101 373.2 386 49.5
Pp3c17_15540 Physcomitrium patens HOM05D005548 ORTHO05D007497 5.5e-100 369.0 360 52.5
SMO367G0640 Selaginella moellendorffii HOM05D005548 ORTHO05D007497 1.6e-94 350.9 370 52.7
SEGI_13755 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 1.6e-94 350.9 369 49.1
SEGI_11261 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 3.5e-78 296.6 315 48.6
Rhsim01G0096400 Rhododendron simsii HOM05D005548 ORTHO05D007497 1.9e-76 290.8 344 43.9
CBR_g3024 Chara braunii HOM05D005548 ORTHO05D007497 1.2e-75 288.1 381 45.1
AUR62021498 Chenopodium quinoa HOM05D005548 ORTHO05D007497 8.9e-58 228.8 136 78.7
Ciclev10010350m.g Citrus clementina HOM05D005548 ORTHO05D007497 6.2e-43 179.5 253 43.9
Oeu048670.1 Olea europaea HOM05D005548 ORTHO05D007497 4.4e-41 173.3 99 77.8
Nn8g39172 Nelumbo nucifera HOM05D005548 ORTHO05D007497 3.8e-40 170.2 104 80.8
CSS0016063 Camellia sinensis var. sinensis HOM05D003621 ORTHO05D004259 7.9e-30 136.0 83 80.7
CSS0042262 Camellia sinensis var. sinensis HOM05D003621 ORTHO05D004259 3.9e-29 133.7 83 79.5
Dinv06981 Davidia involucrata HOM05D005548 ORTHO05D045157 4.8e-27 126.7 89 73.0
SEGI_23308 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 1.2e-25 122.1 309 31.4
CSS0021555 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 1.0e-24 119.0 72 81.9
Ah.12g056490 Amaranthus hybridus HOM05D005548 ORTHO05D007497 2.9e-24 117.5 83 69.9
SEGI_35049 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 4.9e-24 116.7 265 31.3
arahy.Tifrunner.gnm1.ann1.VN1956 Arachis hypogaea HOM05D005548 ORTHO05D007497 2.3e-21 107.8 161 47.2
MCO02G293 Micromonas commoda HOM05D005548 ORTHO05D007497 1.6e-19 101.7 350 28.9
CSS0011769 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 2.1e-19 101.3 151 46.4
CSS0008633 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 3.5e-14 84.0 72 65.3
CSS0008802 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 4.6e-14 83.6 142 42.3
SalBow1G1492 Salvia bowleyana HOM05D005548 ORTHO05D007497 6.1e-14 83.2 122 42.6
Lsat_1_v5_gn_5_96001 Lactuca sativa HOM05D005548 ORTHO05D029961 4.2e-07 60.5 52 57.7


User provided reference genes

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