Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C025302.2 Cucumis melo HOM05D006824 ORTHO05D008779 1.2e-155 553.1 274 100.0
MELO3C008753.2 Cucumis melo HOM05D006824 ORTHO05D008779 1.0e-130 470.3 239 97.5
CsaV3_2G009540 Cucumis sativus L. HOM05D006824 ORTHO05D008779 3.0e-127 458.8 230 97.0
ClCG11G010940 Citrullus lanatus HOM05D006824 ORTHO05D008779 2.2e-109 399.4 237 85.7
Sed0011929 Sechium edule HOM05D006824 ORTHO05D008779 9.2e-92 340.9 232 75.4
FAN05G0802 Fragaria x ananassa HOM05D006824 ORTHO05D008779 1.6e-75 287.0 163 76.7
RcHm_v2.0_Chr3g0448181 Rosa chinensis HOM05D006824 ORTHO05D008779 1.0e-74 284.3 163 76.7
CANSAT54G2581 Cannabis sativa HOM05D006824 ORTHO05D008779 1.7e-74 283.5 167 75.4
Atru.chr12.2132 Acer truncatum HOM05D006824 ORTHO05D008779 3.9e-74 282.3 165 75.2
GSVIVG01019144001 Vitis vinifera HOM05D006824 ORTHO05D008779 1.5e-73 280.4 172 72.1
FAN14G1847 Fragaria x ananassa HOM05D006824 ORTHO05D008779 7.3e-73 278.1 169 73.4
vmacro06000 Vaccinium macrocarpon HOM05D006824 ORTHO05D008779 9.5e-73 277.7 224 59.8
CSS0012922 Camellia sinensis var. sinensis HOM05D006824 ORTHO05D008779 2.1e-72 276.6 166 72.9
CSS0029100 Camellia sinensis var. sinensis HOM05D006824 ORTHO05D008779 2.1e-72 276.6 166 72.9
arahy.Tifrunner.gnm1.ann1.3Y20MY Arachis hypogaea HOM05D006824 ORTHO05D008779 3.6e-72 275.8 160 75.6
Prupe.6G359400 Prunus persica HOM05D006824 ORTHO05D008779 6.2e-72 275.0 167 73.7
arahy.Tifrunner.gnm1.ann1.8HY0WZ Arachis hypogaea HOM05D006824 ORTHO05D008779 8.1e-72 274.6 160 75.0
MD12G1258900 Malus domestica HOM05D006824 ORTHO05D008779 1.1e-71 274.2 170 74.1
Actinidia38928 Actinidia chinensis HOM05D006824 ORTHO05D008779 1.4e-71 273.9 177 70.1
Phvul.008G055700 Phaseolus vulgaris HOM05D006824 ORTHO05D008779 1.4e-71 273.9 180 70.0
Rhsim03G0265800 Rhododendron simsii HOM05D006824 ORTHO05D008779 3.1e-71 272.7 242 56.2
Dinv04348 Davidia involucrata HOM05D006824 ORTHO05D008779 8.9e-71 271.2 212 60.4
Lj8A196G47 Lonicera japonica HOM05D006824 ORTHO05D008779 8.9e-71 271.2 181 69.6
Lalb_Chr19g0126751 Lupinus albus HOM05D006824 ORTHO05D008779 8.9e-71 271.2 164 73.2
Gorai.003G050700 Gossypium raimondii HOM05D006824 ORTHO05D008779 2.0e-70 270.0 194 63.4
Ciclev10012732m.g Citrus clementina HOM05D006824 ORTHO05D008779 4.4e-70 268.9 170 71.2
Oeu010150.1 Olea europaea HOM05D006824 ORTHO05D008779 4.4e-70 268.9 189 65.6
Gohir.A02G138800 Gossypium hirsutum HOM05D006824 ORTHO05D008779 5.8e-70 268.5 194 63.4
Manes.14G158930 Manihot esculenta HOM05D006824 ORTHO05D008779 5.8e-70 268.5 171 69.6
Medtr7g079530 Medicago truncatula HOM05D006824 ORTHO05D008779 5.8e-70 268.5 193 63.7
THA.LOC104813550 Tarenaya hassleriana HOM05D006824 ORTHO05D008779 7.5e-70 268.1 168 71.4
VMungo1383G3541 Vigna mungo HOM05D006824 ORTHO05D008779 7.5e-70 268.1 181 70.2
CiPaw.08G117600 Carya illinoinensis HOM05D006824 ORTHO05D008779 9.9e-70 267.7 171 69.6
Lj1g0017863 Lotus japonicus HOM05D006824 ORTHO05D008779 9.9e-70 267.7 168 70.2
Haze_04530 Corylus avellana HOM05D006824 ORTHO05D008779 1.3e-69 267.3 180 68.3
ECA232G2571 Erigeron canadensis HOM05D006824 ORTHO05D008779 1.3e-69 267.3 192 65.1
Ca_07965_v3 Cicer arietinum L. HOM05D006824 ORTHO05D008779 1.7e-69 266.9 197 62.4
Cpa.g.sc123.9 Carica papaya HOM05D006824 ORTHO05D008779 2.2e-69 266.5 201 62.7
TPR.G28449 Trifolium pratense HOM05D006824 ORTHO05D008779 2.2e-69 266.5 180 66.1
BraA07t30276Z Brassica rapa HOM05D006824 ORTHO05D008779 4.9e-69 265.4 170 68.8
Cc09_g03430 Coffea canephora HOM05D006824 ORTHO05D008779 4.9e-69 265.4 216 59.3
Glyma.09G252100 Glycine max HOM05D006824 ORTHO05D008779 4.9e-69 265.4 182 68.7
A07p26320 Brassica napus HOM05D006824 ORTHO05D008779 6.4e-69 265.0 165 70.3
HanXRQChr11g0323941 Helianthus annuus HOM05D006824 ORTHO05D008779 6.4e-69 265.0 182 67.6
Nitab4.5_0005183g0030 Nicotiana tabacum HOM05D006824 ORTHO05D008779 6.4e-69 265.0 217 58.1
Psat3g104840 Pisum sativum HOM05D006824 ORTHO05D008779 6.4e-69 265.0 201 60.7
Glyma.18G240500 Glycine max HOM05D006824 ORTHO05D008779 8.3e-69 264.6 180 67.8
Duzib128G1599 Durio zibethinus HOM05D006824 ORTHO05D008779 1.1e-68 264.2 172 66.9
FAN02G3690 Fragaria x ananassa HOM05D006824 ORTHO05D008779 1.1e-68 264.2 163 71.8
Lsat_1_v5_gn_9_48761 Lactuca sativa HOM05D006824 ORTHO05D008779 1.1e-68 264.2 206 61.2
CAN.G694.18 Capsicum annuum HOM05D006824 ORTHO05D008779 1.4e-68 263.8 220 59.1
HPP92_009935 Vanilla planifolia HOM05D006824 ORTHO05D008779 1.4e-68 263.8 173 69.9
PGR031G0982 Punica granatum HOM05D006824 ORTHO05D008779 1.9e-68 263.5 192 62.5
COL.COLO4_19831 Corchorus olitorius HOM05D006824 ORTHO05D008779 3.2e-68 262.7 166 70.5
Eucgr.H01379 Eucalyptus grandis HOM05D006824 ORTHO05D008779 4.1e-68 262.3 175 65.7
Potri.010G143000 Populus trichocarpa HOM05D006824 ORTHO05D008779 5.4e-68 261.9 164 70.7
Thecc.05G206500 Theobroma cacao HOM05D006824 ORTHO05D008779 7.1e-68 261.5 172 66.9
Carub.0002s2772 Capsella rubella HOM05D006824 ORTHO05D008779 9.2e-68 261.2 179 67.6
TWI14G0776 Tripterygium wilfordii HOM05D006824 ORTHO05D008779 9.2e-68 261.2 182 66.5
TAR362G0347 Trochodendron aralioides HOM05D006824 ORTHO05D008779 9.2e-68 261.2 163 71.8
Sopen05g034220 Solanum pennellii HOM05D006824 ORTHO05D008779 1.2e-67 260.8 194 63.9
PGSC0003DMG400023472 Solanum tuberosum HOM05D006824 ORTHO05D008779 1.6e-67 260.4 216 58.3
C06p28710 Brassica napus HOM05D006824 ORTHO05D008779 2.7e-67 259.6 170 68.2
Thhalv10019052m.g Eutrema salsugineum HOM05D006824 ORTHO05D008779 6.0e-67 258.5 176 67.0
CDE02G0053 Ceratophyllum demersum HOM05D006824 ORTHO05D008779 1.3e-66 257.3 186 65.1
CARHR049030 Cardamine hirsuta HOM05D006824 ORTHO05D008779 2.3e-66 256.5 216 56.0
Nn1g09799 Nelumbo nucifera HOM05D006824 ORTHO05D008779 2.3e-66 256.5 180 65.6
PSO170G6807 Papaver somniferum HOM05D006824 ORTHO05D008779 3.0e-66 256.1 190 61.6
CDE09G0666 Ceratophyllum demersum HOM05D006824 ORTHO05D008779 6.6e-66 255.0 177 67.8
Sabra10G0110900 Salix brachista HOM05D006824 ORTHO05D008779 6.6e-66 255.0 164 70.1
Sp5g35980 Schrenkiella parvula HOM05D006824 ORTHO05D008779 6.6e-66 255.0 174 64.9
AUR62006674 Chenopodium quinoa HOM05D006824 ORTHO05D008779 1.1e-65 254.2 163 69.3
SGA_v2.0_scaffold13G06472 Striga asiatica HOM05D006824 ORTHO05D008779 1.5e-65 253.8 171 67.8
Aqoxy5G00154 Aquilegia oxysepala HOM05D006824 ORTHO05D008779 1.9e-65 253.4 197 58.9
AL2G41760 Arabidopsis lyrata HOM05D006824 ORTHO05D008779 2.5e-65 253.1 171 66.1
AUR62000332 Chenopodium quinoa HOM05D006824 ORTHO05D008779 3.3e-65 252.7 232 55.2
Aa31LG4G40 Aethionema arabicum HOM05D006824 ORTHO05D008779 5.6e-65 251.9 173 67.1
DCAR_005505 Daucus carota HOM05D006824 ORTHO05D008779 2.1e-64 250.0 187 60.4
EL10Ac4g09985 Beta vulgaris HOM05D006824 ORTHO05D008779 8.1e-64 248.1 210 60.0
BolC6t38040H Brassica oleracea HOM05D006824 ORTHO05D008779 8.1e-64 248.1 193 59.6
SalBow3G1586 Salvia bowleyana HOM05D006824 ORTHO05D008779 8.1e-64 248.1 215 54.0
Migut.F01795 Erythranthe guttata HOM05D006824 ORTHO05D008779 5.8e-62 241.9 164 65.9
AT1G79790 Arabidopsis thaliana HOM05D006824 ORTHO05D008779 7.6e-62 241.5 204 57.8
SMO361G0474 Selaginella moellendorffii HOM05D006824 ORTHO05D008779 6.4e-61 238.4 187 58.8
FvH4_6g00710 Fragaria vesca HOM05D006824 ORTHO05D008779 1.2e-59 234.2 135 76.3
Nitab4.5_0009285g0020 Nicotiana tabacum HOM05D006824 ORTHO05D008779 1.0e-58 231.1 211 55.9
Hma1.2p1_0171F.1_g075760 Hydrangea macrophylla HOM05D006824 ORTHO05D008779 4.7e-56 222.2 133 71.4
Gohir.D03G049300 Gossypium hirsutum HOM05D006824 ORTHO05D008779 6.9e-55 218.4 175 59.4
Zm00001eb169290 Zea mays HOM05D006824 ORTHO05D008779 3.4e-54 216.1 190 56.3
Pp3c3_9990 Physcomitrium patens HOM05D006824 ORTHO05D008779 7.6e-54 214.9 160 60.6
MBI08_g02107_MAGBIO Magnolia biondii HOM05D006824 ORTHO05D008779 6.4e-53 211.8 137 67.9
CBR_g54655 Chara braunii HOM05D006824 ORTHO05D008779 1.1e-52 211.1 167 56.9
Ah.06g195550 Amaranthus hybridus HOM05D006824 ORTHO05D008779 1.4e-52 210.7 163 62.6
AagrBONN_evm.TU.Sc2ySwM_344.3559 Anthoceros agrestis HOM05D006824 ORTHO05D008779 3.2e-52 209.5 161 59.6
Mapoly0002s0020 Marchantia polymorpha HOM05D006824 ORTHO05D008779 4.2e-52 209.1 158 59.5
SalBow3G1143 Salvia bowleyana HOM05D006824 ORTHO05D008779 3.9e-50 202.6 159 57.9
arahy.Tifrunner.gnm1.ann1.EIZA4A Arachis hypogaea HOM05D006824 ORTHO05D008779 2.7e-43 179.9 106 71.7
MD04G1242100 Malus domestica HOM05D006824 ORTHO05D008779 5.1e-42 175.6 114 67.5
arahy.Tifrunner.gnm1.ann1.JEI8NT Arachis hypogaea HOM05D006824 ORTHO05D008779 1.2e-38 164.5 95 71.6
Cre13.g563200 Chlamydomonas reinhardtii HOM05D006824 ORTHO05D008779 2.0e-38 163.7 165 48.5
PRCOL_00006210 Prasinoderma coloniale HOM05D006824 ORTHO05D008779 2.1e-35 153.7 184 43.5
QL01p046721 Quercus lobata HOM05D006824 ORTHO05D008779 1.9e-33 147.1 88 72.7
FAN09G4644 Fragaria x ananassa HOM05D006824 ORTHO05D008779 3.2e-28 129.8 81 70.4
Nitab4.5_0008294g0020 Nicotiana tabacum HOM05D006824 ORTHO05D008779 2.1e-27 127.1 168 42.9
Hund07329 Selenicereus undatus HOM05D006824 ORTHO05D008779 3.0e-26 123.2 209 36.8
ATR0824G111 Amborella trichopoda HOM05D006824 ORTHO05D008779 9.7e-17 91.7 72 59.7
Solyc05g055820.3 Solanum lycopersicum HOM05D006824 ORTHO05D008779 1.7e-16 90.9 56 67.9
CARHR074720 Cardamine hirsuta HOM05D006824 ORTHO05D008779 3.7e-16 89.7 52 71.2
SEGI_14412 Sequoiadendron giganteum HOM05D006824 ORTHO05D008779 6.3e-16 89.0 53 71.7
arahy.Tifrunner.gnm1.ann1.X7EDXL Arachis hypogaea HOM05D006824 ORTHO05D021501 6.9e-15 85.5 54 66.7
Psat3g104160 Pisum sativum HOM05D006824 ORTHO05D008779 1.0e-13 81.6 60 61.7
arahy.Tifrunner.gnm1.ann1.0X0W56 Arachis hypogaea HOM05D006824 ORTHO05D021501 4.7e-11 72.8 79 45.6
arahy.Tifrunner.gnm1.ann1.2JVF5K Arachis hypogaea HOM05D001175 ORTHO05D021501 4.7e-11 72.8 79 45.6
arahy.Tifrunner.gnm1.ann1.96LZZJ Arachis hypogaea HOM05D006824 ORTHO05D021501 4.7e-11 72.8 79 45.6
arahy.Tifrunner.gnm1.ann1.DM3ST4 Arachis hypogaea HOM05D006824 ORTHO05D021501 4.7e-11 72.8 79 45.6
arahy.Tifrunner.gnm1.ann1.LN2II4 Arachis hypogaea HOM05D006661 ORTHO05D021501 1.8e-10 70.9 78 46.2
FAN09G1422 Fragaria x ananassa HOM05D001170 ORTHO05D002759 6.3e-08 62.4 39 61.5
MD04G1242000 Malus domestica HOM05D006824 ORTHO05D008779 6.9e-07 58.9 32 71.9
arahy.Tifrunner.gnm1.ann1.LK4K8I Arachis hypogaea HOM05D006688 ORTHO05D008550 3.4e-06 56.6 33 72.7
HPP92_027184 Vanilla planifolia HOM05D001660 ORTHO05D003277 5.9e-06 55.8 88 34.1


User provided reference genes

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