Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C025144.2 Cucumis melo HOM05D006228 ORTHO05D007847 2.6e-250 868.2 436 100.0
CsaV3_5G008840 Cucumis sativus L. HOM05D006228 ORTHO05D007847 3.1e-227 791.6 453 90.5
ClCG11G010510 Citrullus lanatus HOM05D006228 ORTHO05D007847 2.0e-213 745.7 453 85.2
Sed0002982 Sechium edule HOM05D006228 ORTHO05D007847 2.3e-190 669.1 453 77.7
Haze_17175 Corylus avellana HOM05D006228 ORTHO05D007847 1.1e-144 517.3 448 61.4
CiPaw.01G295100 Carya illinoinensis HOM05D006228 ORTHO05D007847 3.1e-142 509.2 445 60.7
Prupe.2G245100 Prunus persica HOM05D006228 ORTHO05D007847 2.0e-141 506.5 444 61.0
Dinv34431 Davidia involucrata HOM05D006228 ORTHO05D007847 1.0e-140 504.2 448 59.8
CSS0000174 Camellia sinensis var. sinensis HOM05D006228 ORTHO05D007847 2.2e-140 503.1 444 60.6
MD07G1212900 Malus domestica HOM05D006228 ORTHO05D007847 2.9e-140 502.7 442 59.5
CSS0026214 Camellia sinensis var. sinensis HOM05D006228 ORTHO05D007847 6.4e-140 501.5 444 60.4
Cfa005508 Carpinus fangiana HOM05D006228 ORTHO05D007847 7.9e-138 494.6 453 59.4
GSVIVG01016380001 Vitis vinifera HOM05D006228 ORTHO05D007847 1.0e-137 494.2 447 58.4
Manes.10G018500 Manihot esculenta HOM05D006228 ORTHO05D007847 1.3e-137 493.8 448 58.5
Potri.008G063500 Populus trichocarpa HOM05D006228 ORTHO05D007847 2.3e-137 493.0 453 59.2
TAR633G1830 Trochodendron aralioides HOM05D006228 ORTHO05D007847 3.9e-137 492.3 439 57.9
Actinidia13913 Actinidia chinensis HOM05D006228 ORTHO05D007847 5.1e-137 491.9 444 59.0
Peaxi162Scf00401g00030 Petunia axillaris HOM05D006228 ORTHO05D007847 1.6e-135 486.9 414 60.4
Sabra08G0046800 Salix brachista HOM05D006228 ORTHO05D007847 8.2e-135 484.6 444 59.0
Rhsim09G0171700 Rhododendron simsii HOM05D006228 ORTHO05D007847 1.8e-134 483.4 468 56.0
TWI09G0225 Tripterygium wilfordii HOM05D006228 ORTHO05D007847 4.5e-133 478.8 441 56.2
Nn2g13585 Nelumbo nucifera HOM05D006228 ORTHO05D007847 2.5e-131 473.0 447 56.8
Nitab4.5_0012179g0020 Nicotiana tabacum HOM05D006228 ORTHO05D007847 5.1e-129 465.3 455 55.4
Thecc.10G027500 Theobroma cacao HOM05D006228 ORTHO05D007847 2.5e-128 463.0 442 56.1
Nitab4.5_0000278g0180 Nicotiana tabacum HOM05D006228 ORTHO05D007847 2.2e-127 459.9 418 57.7
RcHm_v2.0_Chr1g0369221 Rosa chinensis HOM05D006228 ORTHO05D007847 8.2e-127 458.0 442 56.3
PGSC0003DMG400007303 Solanum tuberosum HOM05D006228 ORTHO05D007847 5.3e-126 455.3 459 53.2
Psat5g127520 Pisum sativum HOM05D006228 ORTHO05D007847 3.4e-125 452.6 440 54.5
Solyc06g009690.3 Solanum lycopersicum HOM05D006228 ORTHO05D007847 3.4e-125 452.6 441 53.7
Sopen06g004350 Solanum pennellii HOM05D006228 ORTHO05D007847 1.0e-124 451.1 441 53.7
Ca_17139_v3 Cicer arietinum L. HOM05D006228 ORTHO05D007847 1.7e-124 450.3 440 54.8
TPR.G29810 Trifolium pratense HOM05D006228 ORTHO05D007847 8.5e-124 448.0 435 54.7
Gohir.D06G170400 Gossypium hirsutum HOM05D006228 ORTHO05D007847 1.1e-123 447.6 443 55.5
Gorai.010G199300 Gossypium raimondii HOM05D006228 ORTHO05D007847 5.5e-123 445.3 444 54.7
THA.LOC104810050 Tarenaya hassleriana HOM05D006228 ORTHO05D007847 9.4e-123 444.5 445 54.6
CAN.G1280.21 Capsicum annuum HOM05D006228 ORTHO05D007847 1.6e-122 443.7 456 51.8
Cc02_g06990 Coffea canephora HOM05D006228 ORTHO05D007847 1.4e-121 440.7 450 53.6
COL.COLO4_25614 Corchorus olitorius HOM05D006228 ORTHO05D007847 2.3e-121 439.9 442 53.2
Ah.16g103060 Amaranthus hybridus HOM05D006228 ORTHO05D007847 8.8e-121 438.0 425 52.7
Lalb_Chr18g0052781 Lupinus albus HOM05D006228 ORTHO05D007847 8.8e-121 438.0 452 54.9
Medtr3g070010 Medicago truncatula HOM05D006228 ORTHO05D007847 2.0e-120 436.8 441 52.8
Lj1A949T58 Lonicera japonica HOM05D006228 ORTHO05D007847 1.7e-119 433.7 460 52.6
Gohir.A06G164900 Gossypium hirsutum HOM05D006228 ORTHO05D007847 2.2e-119 433.3 443 54.4
FAN01G0169 Fragaria x ananassa HOM05D006228 ORTHO05D007847 2.8e-119 433.0 442 53.4
AUR62022833 Chenopodium quinoa HOM05D006228 ORTHO05D007847 4.8e-119 432.2 440 53.6
MBI14_g08147_MAGBIO Magnolia biondii HOM05D006228 ORTHO05D007847 4.8e-119 432.2 450 52.2
PSO384G3635 Papaver somniferum HOM05D006228 ORTHO05D007847 6.3e-119 431.8 438 53.9
FAN06G4757 Fragaria x ananassa HOM05D006228 ORTHO05D007847 8.2e-119 431.4 442 53.2
FAN03G1418 Fragaria x ananassa HOM05D006228 ORTHO05D007847 1.1e-118 431.0 429 54.1
FvH4_7g23870 Fragaria vesca HOM05D006228 ORTHO05D007847 4.1e-118 429.1 442 52.9
Aa31LG5G19710 Aethionema arabicum HOM05D006228 ORTHO05D007847 5.3e-118 428.7 441 51.9
SGA_v2.0_scaffold2G01060 Striga asiatica HOM05D006228 ORTHO05D007847 4.5e-117 425.6 442 52.5
Migut.F00709 Erythranthe guttata HOM05D006228 ORTHO05D007847 7.7e-117 424.9 439 54.0
Lj6g0016911 Lotus japonicus HOM05D006228 ORTHO05D007847 2.2e-116 423.3 447 51.9
Aqoxy1G00736 Aquilegia oxysepala HOM05D006228 ORTHO05D007847 6.5e-116 421.8 433 53.3
Sp4g22220 Schrenkiella parvula HOM05D006228 ORTHO05D007847 4.2e-115 419.1 434 50.9
Oeu006660.1 Olea europaea HOM05D006228 ORTHO05D007847 5.5e-115 418.7 443 52.6
EL10Ac2g04780 Beta vulgaris HOM05D006228 ORTHO05D007847 1.2e-114 417.5 428 53.5
Thhalv10016686m.g Eutrema salsugineum HOM05D006228 ORTHO05D007847 1.2e-114 417.5 434 52.1
Aqoxy3G00589 Aquilegia oxysepala HOM05D006228 ORTHO05D007847 2.1e-114 416.8 433 52.4
arahy.Tifrunner.gnm1.ann1.H1F5T1 Arachis hypogaea HOM05D006228 ORTHO05D007847 3.6e-114 416.0 463 51.6
C03p26500 Brassica napus HOM05D006228 ORTHO05D007847 4.7e-114 415.6 438 51.6
Hma1.2p1_0026F.1_g016930 Hydrangea macrophylla HOM05D006228 ORTHO05D007847 4.7e-114 415.6 320 64.1
Hund13827 Selenicereus undatus HOM05D006228 ORTHO05D007847 4.7e-114 415.6 491 48.9
vmacro10067 Vaccinium macrocarpon HOM05D006228 ORTHO05D007847 4.7e-114 415.6 481 49.9
Glyma.18G031000 Glycine max HOM05D006228 ORTHO05D007847 2.3e-113 413.3 447 51.7
AUR62012200 Chenopodium quinoa HOM05D006228 ORTHO05D007847 3.0e-113 412.9 430 51.9
BolC3t15036H Brassica oleracea HOM05D006228 ORTHO05D007847 6.7e-113 411.8 427 52.5
AL4G37490 Arabidopsis lyrata HOM05D006228 ORTHO05D007847 1.5e-112 410.6 432 51.2
PGR044G0451 Punica granatum HOM05D006228 ORTHO05D007847 4.4e-112 409.1 443 52.4
AT2G39910 Arabidopsis thaliana HOM05D006228 ORTHO05D007847 5.7e-112 408.7 432 51.2
Carub.0004s2204 Capsella rubella HOM05D006228 ORTHO05D007847 9.7e-112 407.9 436 50.9
Lsat_1_v5_gn_9_63220 Lactuca sativa HOM05D006228 ORTHO05D007847 1.7e-111 407.1 412 54.1
A03p22360 Brassica napus HOM05D006228 ORTHO05D007847 3.7e-111 406.0 438 50.7
BraA03t11466Z Brassica rapa HOM05D006228 ORTHO05D007847 8.2e-111 404.8 429 51.3
VMungo1383G2528 Vigna mungo HOM05D006228 ORTHO05D007847 8.2e-111 404.8 448 50.4
Sc11g0007370 Simmondsia chinensis HOM05D006228 ORTHO05D007847 2.4e-110 403.3 382 56.5
CARHR134830 Cardamine hirsuta HOM05D006228 ORTHO05D007847 4.1e-110 402.5 431 50.3
BcaC01g05454 Brassica carinata HOM05D006228 ORTHO05D007847 9.1e-110 401.4 434 51.4
BcaB01g03579 Brassica carinata HOM05D006228 ORTHO05D007847 2.9e-108 396.4 441 49.4
Atru.chr12.264 Acer truncatum HOM05D006228 ORTHO05D007847 3.8e-108 396.0 387 55.3
HanXRQChr09g0246891 Helianthus annuus HOM05D006228 ORTHO05D007847 2.7e-106 389.8 442 50.5
Duzib106G2031 Durio zibethinus HOM05D006228 ORTHO05D007847 6.1e-106 388.7 443 50.3
ECA232G3403 Erigeron canadensis HOM05D006228 ORTHO05D007847 8.8e-105 384.8 435 49.2
Phvul.001G239600 Phaseolus vulgaris HOM05D006228 ORTHO05D007847 1.5e-104 384.0 448 50.2
SHI03521 Sapria himalayana HOM05D006228 ORTHO05D007847 1.5e-104 384.0 434 49.8
Eucgr.J00246 Eucalyptus grandis HOM05D006228 ORTHO05D007847 8.2e-103 378.3 435 49.9
SalBow5G2373 Salvia bowleyana HOM05D006228 ORTHO05D007847 1.8e-102 377.1 425 49.9
DCAR_011778 Daucus carota HOM05D006228 ORTHO05D007847 2.0e-101 373.6 420 48.8
ATR0580G418 Amborella trichopoda HOM05D006228 ORTHO05D007847 3.5e-101 372.9 432 47.0
Ciclev10031701m.g Citrus clementina HOM05D006228 ORTHO05D007847 1.1e-99 367.9 437 48.7
FAN10G3493 Fragaria x ananassa HOM05D006228 ORTHO05D007847 1.9e-99 367.1 442 48.0
PSO585G0034 Papaver somniferum HOM05D006228 ORTHO05D007847 3.0e-97 359.8 301 58.5
Sed0008304 Sechium edule HOM05D006228 ORTHO05D007847 5.4e-94 349.0 406 54.4
arahy.Tifrunner.gnm1.ann1.PGVU2S Arachis hypogaea HOM05D006228 ORTHO05D007847 3.8e-92 342.8 369 53.4
Zm00001eb226270 Zea mays HOM05D006228 ORTHO05D007847 4.1e-86 322.8 431 43.4
SEGI_03712 Sequoiadendron giganteum HOM05D006228 ORTHO05D007847 1.5e-83 314.3 447 41.4
Os06g0694100 Oryza sativa ssp. japonica HOM05D006228 ORTHO05D007847 9.5e-83 311.6 435 41.6
Cpa.g.sc19.228 Carica papaya HOM05D006228 ORTHO05D007847 1.0e-81 308.1 427 43.3
FAN06G0021 Fragaria x ananassa HOM05D006228 ORTHO05D007847 1.3e-79 301.2 331 51.7
CDE05G2573 Ceratophyllum demersum HOM05D006228 ORTHO05D007847 2.4e-78 297.0 359 47.9
unitig_747.g21715 Utricularia gibba HOM05D006228 ORTHO05D007847 2.4e-78 297.0 445 41.8
BcaC02g07378 Brassica carinata HOM05D006228 ORTHO05D007847 3.4e-56 223.4 253 49.8
QL08p062537 Quercus lobata HOM05D006228 ORTHO05D007847 1.4e-49 201.4 147 63.9
AagrBONN_evm.TU.Sc2ySwM_344.5121 Anthoceros agrestis HOM05D006228 ORTHO05D007847 5.2e-49 199.5 371 34.2
Actinidia00930 Actinidia chinensis HOM05D006228 ORTHO05D007847 2.2e-47 194.1 150 62.7
HPP92_018568 Vanilla planifolia HOM05D006228 ORTHO05D007847 4.9e-47 193.0 271 43.2
RcHm_v2.0_Chr2g0110551 Rosa chinensis HOM05D006228 ORTHO05D007847 5.4e-46 189.5 141 63.1
Pp3c11_8050 Physcomitrium patens HOM05D006228 ORTHO05D007847 2.1e-45 187.6 285 37.5
Mapoly0014s0032 Marchantia polymorpha HOM05D006228 ORTHO05D007847 1.6e-42 177.9 371 31.0
MSTRG.8975 Avicennia marina HOM05D006228 ORTHO05D007847 5.3e-41 172.9 234 47.9
SMO273G0042 Selaginella moellendorffii HOM05D006228 ORTHO05D007847 5.3e-41 172.9 382 31.4
BcaB06g29116 Brassica carinata HOM05D006228 ORTHO05D007847 2.0e-40 171.0 216 43.5
HPP92_018569 Vanilla planifolia HOM05D006228 ORTHO05D007847 2.0e-40 171.0 141 55.3
SMO147G0063 Selaginella moellendorffii HOM05D006228 ORTHO05D007847 2.5e-35 154.1 242 36.0
RcHm_v2.0_Chr1g0339731 Rosa chinensis HOM05D006228 ORTHO05D007847 5.8e-32 142.9 141 51.8
Actinidia25353 Actinidia chinensis HOM05D006228 ORTHO05D007847 2.2e-31 141.0 145 53.8
BolC4t28269H Brassica oleracea HOM05D006228 ORTHO05D007847 1.3e-26 125.2 144 45.1
arahy.Tifrunner.gnm1.ann1.DSNI2G Arachis hypogaea HOM05D002669 ORTHO05D003001 1.4e-17 95.1 94 47.9
arahy.Tifrunner.gnm1.ann1.YTZ5F3 Arachis hypogaea HOM05D006228 ORTHO05D007847 9.0e-17 92.4 61 68.9
MCO16G020 Micromonas commoda HOM05D006228 ORTHO05D007847 2.9e-15 87.4 263 24.3
Cre01.g048600 Chlamydomonas reinhardtii HOM05D006228 ORTHO05D007847 3.9e-12 77.0 221 25.8
C04p67680 Brassica napus HOM05D006228 ORTHO05D007847 7.4e-11 72.8 113 38.1
Nitab4.5_0001379g0140 Nicotiana tabacum HOM05D006228 ORTHO05D007847 2.5e-06 57.8 29 79.3


User provided reference genes

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