Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C025122.2 Cucumis melo HOM05D004935 ORTHO05D005676 7.9e-110 400.6 223 100.0
CsaV3_5G024270 Cucumis sativus L. HOM05D004935 ORTHO05D005676 2.7e-102 375.6 223 95.1
ClCG01G008740 Citrullus lanatus HOM05D004935 ORTHO05D005676 8.8e-93 344.0 224 87.5
Sed0000771 Sechium edule HOM05D004935 ORTHO05D005676 3.6e-62 242.3 224 65.2
FAN28G0886 Fragaria x ananassa HOM05D004935 ORTHO05D005676 1.1e-55 220.7 213 61.0
FvH4_1g28640 Fragaria vesca HOM05D004935 ORTHO05D005676 2.8e-54 216.1 214 60.7
Prupe.3G163400 Prunus persica HOM05D004935 ORTHO05D005676 3.6e-54 215.7 225 59.6
Duzib138G1863 Durio zibethinus HOM05D004935 ORTHO05D005676 4.7e-54 215.3 205 62.0
Thecc.04G001700 Theobroma cacao HOM05D004935 ORTHO05D005676 4.7e-54 215.3 188 64.4
RcHm_v2.0_Chr3g0492651 Rosa chinensis HOM05D004935 ORTHO05D005676 8.1e-54 214.5 201 61.2
Manes.02G079800 Manihot esculenta HOM05D004935 ORTHO05D005676 6.8e-53 211.5 210 58.6
CiPaw.03G075500 Carya illinoinensis HOM05D004935 ORTHO05D005676 8.9e-53 211.1 193 63.7
Actinidia01601 Actinidia chinensis HOM05D004935 ORTHO05D005676 3.4e-52 209.1 191 63.9
CSS0027542 Camellia sinensis var. sinensis HOM05D004935 ORTHO05D005676 4.4e-52 208.8 221 59.3
MD09G1265200 Malus domestica HOM05D004935 ORTHO05D005676 7.5e-52 208.0 223 56.5
vmacro20490 Vaccinium macrocarpon HOM05D004935 ORTHO05D005676 1.7e-51 206.8 223 60.1
Rhsim10G0182800 Rhododendron simsii HOM05D004935 ORTHO05D005676 3.7e-51 205.7 225 56.4
Manes.01G121800 Manihot esculenta HOM05D004935 ORTHO05D005676 4.9e-51 205.3 205 60.5
Hma1.2p1_0034F.1_g021280 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 6.4e-51 204.9 225 54.7
CiPaw.04G048500 Carya illinoinensis HOM05D004935 ORTHO05D005676 1.1e-50 204.1 208 57.7
Ciclev10029179m.g Citrus clementina HOM05D004935 ORTHO05D005676 1.4e-50 203.8 206 58.3
FAN26G0615 Fragaria x ananassa HOM05D004935 ORTHO05D005676 2.4e-50 203.0 231 55.8
Nn4g24526 Nelumbo nucifera HOM05D004935 ORTHO05D005676 3.2e-50 202.6 189 63.5
COL.COLO4_19777 Corchorus olitorius HOM05D004935 ORTHO05D005676 5.4e-50 201.8 204 58.8
TPR.G12527 Trifolium pratense HOM05D004935 ORTHO05D005676 5.4e-50 201.8 223 54.7
Nitab4.5_0002465g0010 Nicotiana tabacum HOM05D004935 ORTHO05D005676 7.1e-50 201.4 225 52.9
MD17G1261400 Malus domestica HOM05D004935 ORTHO05D005676 1.2e-49 200.7 223 55.2
Gohir.A07G073800 Gossypium hirsutum HOM05D004935 ORTHO05D005676 1.6e-49 200.3 210 54.8
Duzib133G0236 Durio zibethinus HOM05D004935 ORTHO05D005676 2.7e-49 199.5 207 58.0
TWI53G1040 Tripterygium wilfordii HOM05D004935 ORTHO05D005676 2.7e-49 199.5 200 61.0
Medtr5g091900 Medicago truncatula HOM05D004935 ORTHO05D005676 3.5e-49 199.1 185 60.0
QL02p059972 Quercus lobata HOM05D004935 ORTHO05D005676 1.0e-48 197.6 190 60.5
Nitab4.5_0001088g0190 Nicotiana tabacum HOM05D004935 ORTHO05D005676 1.7e-48 196.8 205 55.1
Aqoxy3G04045 Aquilegia oxysepala HOM05D004935 ORTHO05D005676 3.9e-48 195.7 188 59.6
Dinv19063 Davidia involucrata HOM05D004935 ORTHO05D005676 3.9e-48 195.7 180 63.9
PGSC0003DMG400013258 Solanum tuberosum HOM05D004935 ORTHO05D005676 1.1e-47 194.1 198 56.6
Actinidia17180 Actinidia chinensis HOM05D004935 ORTHO05D005676 1.5e-47 193.7 225 54.2
Potri.004G082300 Populus trichocarpa HOM05D004935 ORTHO05D005676 2.5e-47 193.0 188 60.1
Sopen11g006600 Solanum pennellii HOM05D004935 ORTHO05D005676 3.3e-47 192.6 197 57.4
Actinidia28792 Actinidia chinensis HOM05D004935 ORTHO05D005676 5.6e-47 191.8 194 57.2
Hma1.2p1_0158F.1_g069850 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 9.5e-47 191.0 197 58.9
Lj4A255T23 Lonicera japonica HOM05D004935 ORTHO05D005676 9.5e-47 191.0 216 52.8
Lj6g0018793 Lotus japonicus HOM05D004935 ORTHO05D005676 9.5e-47 191.0 197 57.9
arahy.Tifrunner.gnm1.ann1.5XP26J Arachis hypogaea HOM05D004935 ORTHO05D005676 1.6e-46 190.3 184 59.2
Gohir.D07G078500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 2.1e-46 189.9 210 52.4
THA.LOC104820912 Tarenaya hassleriana HOM05D004935 ORTHO05D005676 2.1e-46 189.9 191 58.1
MSTRG.3688 Avicennia marina HOM05D004935 ORTHO05D005676 2.8e-46 189.5 217 53.9
Peaxi162Scf00078g00178 Petunia axillaris HOM05D004935 ORTHO05D005676 2.8e-46 189.5 215 53.0
Eucgr.J01625 Eucalyptus grandis HOM05D004935 ORTHO05D005676 3.6e-46 189.1 185 58.4
Gorai.007G188100 Gossypium raimondii HOM05D004935 ORTHO05D005676 3.6e-46 189.1 194 56.2
CANSAT78G0803 Cannabis sativa HOM05D004935 ORTHO05D005676 6.2e-46 188.3 192 56.8
Atru.chr1.1949 Acer truncatum HOM05D004935 ORTHO05D005676 8.1e-46 188.0 157 66.2
Glyma.18G042900 Glycine max HOM05D004935 ORTHO05D005676 8.1e-46 188.0 187 58.3
Gohir.A11G169300 Gossypium hirsutum HOM05D004935 ORTHO05D005676 8.1e-46 188.0 195 55.9
Solyc11g011760.3 Solanum lycopersicum HOM05D004935 ORTHO05D005676 1.4e-45 187.2 198 56.6
Migut.K01110 Erythranthe guttata HOM05D004935 ORTHO05D005676 1.8e-45 186.8 212 53.8
Gohir.D11G175500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 1.8e-45 186.8 194 55.7
Glyma.11G213800 Glycine max HOM05D004935 ORTHO05D005676 3.1e-45 186.0 218 51.4
Ca_06292_v3 Cicer arietinum L. HOM05D004935 ORTHO05D005676 5.2e-45 185.3 202 55.9
Phvul.001G228000 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 5.2e-45 185.3 185 56.2
TAR622G0462 Trochodendron aralioides HOM05D004935 ORTHO05D005676 6.8e-45 184.9 230 49.6
unitig_748.g8451 Utricularia gibba HOM05D004935 ORTHO05D005676 4.4e-44 182.2 185 61.1
AT5G16550 Arabidopsis thaliana HOM05D004935 ORTHO05D005676 5.8e-44 181.8 194 56.2
AL6G27510 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 7.6e-44 181.4 195 55.9
Gorai.001G082900 Gossypium raimondii HOM05D004935 ORTHO05D005676 7.6e-44 181.4 212 51.4
Cfa007772 Carpinus fangiana HOM05D004935 ORTHO05D005676 9.9e-44 181.0 244 49.2
VMungo1383G0526 Vigna mungo HOM05D004935 ORTHO05D005676 9.9e-44 181.0 188 55.3
Oeu032311.1 Olea europaea HOM05D004935 ORTHO05D005676 2.2e-43 179.9 214 53.7
Sabra04G0054800 Salix brachista HOM05D004935 ORTHO05D005676 2.2e-43 179.9 183 58.5
Psat2g014520 Pisum sativum HOM05D004935 ORTHO05D005676 2.9e-43 179.5 195 55.4
Lj2A514G44 Lonicera japonica HOM05D004935 ORTHO05D005676 4.9e-43 178.7 243 48.6
SGA_v2.0_scaffold45G17134 Striga asiatica HOM05D004935 ORTHO05D005676 6.4e-43 178.3 222 51.8
PSO170G5471 Papaver somniferum HOM05D004935 ORTHO05D005676 1.1e-42 177.6 212 49.1
Hund13074 Selenicereus undatus HOM05D004935 ORTHO05D005676 1.1e-42 177.6 202 52.5
PSO407G0171 Papaver somniferum HOM05D004935 ORTHO05D005676 1.4e-42 177.2 220 47.7
Carub.0006s1475 Capsella rubella HOM05D004935 ORTHO05D005676 2.4e-42 176.4 195 53.8
PGR042G3611 Punica granatum HOM05D004935 ORTHO05D005676 4.1e-42 175.6 220 52.3
SalBow3G4475 Salvia bowleyana HOM05D004935 ORTHO05D005676 4.1e-42 175.6 191 54.5
Dinv28224 Davidia involucrata HOM05D004935 ORTHO05D005676 9.2e-42 174.5 228 50.9
BcaC03g18499 Brassica carinata HOM05D004935 ORTHO05D005676 1.6e-41 173.7 219 51.1
arahy.Tifrunner.gnm1.ann1.8KIW52 Arachis hypogaea HOM05D004935 ORTHO05D005676 1.7e-40 170.2 186 53.2
Oeu029081.1 Olea europaea HOM05D004935 ORTHO05D005676 8.6e-40 167.9 180 58.3
BcaB08g36840 Brassica carinata HOM05D004935 ORTHO05D005676 1.1e-39 167.5 210 51.4
MBI13_g35399_MAGBIO Magnolia biondii HOM05D004935 ORTHO05D005676 1.1e-39 167.5 221 48.9
C03p09070 Brassica napus HOM05D004935 ORTHO05D005676 2.5e-39 166.4 196 52.0
Lalb_Chr18g0053611 Lupinus albus HOM05D004935 ORTHO05D005676 2.5e-39 166.4 181 53.6
BolC3t13402H Brassica oleracea HOM05D004935 ORTHO05D005676 3.3e-39 166.0 229 46.3
Cc07_g13020 Coffea canephora HOM05D004935 ORTHO05D005676 5.6e-39 165.2 220 47.7
Lalb_Chr10g0104161 Lupinus albus HOM05D004935 ORTHO05D005676 9.6e-39 164.5 176 54.5
Zm00001eb179280 Zea mays HOM05D004935 ORTHO05D005676 1.2e-38 164.1 187 49.2
BcaB01g04976 Brassica carinata HOM05D004935 ORTHO05D005676 1.6e-38 163.7 194 53.6
BcaC04g18869 Brassica carinata HOM05D004935 ORTHO05D005676 4.7e-38 162.2 172 55.2
Psat2g044600 Pisum sativum HOM05D004935 ORTHO05D005676 1.1e-37 161.0 208 50.0
Zm00001eb041900 Zea mays HOM05D004935 ORTHO05D005676 1.4e-37 160.6 216 44.9
C09p60610 Brassica napus HOM05D004935 ORTHO05D005676 5.2e-37 158.7 172 54.7
BolC9t58894H Brassica oleracea HOM05D004935 ORTHO05D005676 5.2e-37 158.7 172 54.7
Lalb_Chr17g0345951 Lupinus albus HOM05D004935 ORTHO05D005676 5.2e-37 158.7 201 48.8
A10p22660 Brassica napus HOM05D004935 ORTHO05D005676 8.9e-37 157.9 175 53.7
BraA10t44327Z Brassica rapa HOM05D004935 ORTHO05D005676 8.9e-37 157.9 175 53.7
arahy.Tifrunner.gnm1.ann1.63R0A2 Arachis hypogaea HOM05D004935 ORTHO05D005676 1.5e-36 157.1 186 50.0
HPP92_017642 Vanilla planifolia HOM05D004935 ORTHO05D005676 1.5e-36 157.1 158 59.5
Lsat_1_v5_gn_8_111520 Lactuca sativa HOM05D004935 ORTHO05D005676 2.6e-36 156.4 199 49.2
Glyma.02G242200 Glycine max HOM05D004935 ORTHO05D005676 4.4e-36 155.6 199 47.2
A02p03620 Brassica napus HOM05D004935 ORTHO05D005676 1.3e-35 154.1 224 45.5
Sc11g0004790 Simmondsia chinensis HOM05D004935 ORTHO05D005676 6.4e-35 151.8 227 42.7
BraA02t05331Z Brassica rapa HOM05D004935 ORTHO05D005676 1.4e-34 150.6 224 46.0
TPR.G9990 Trifolium pratense HOM05D004935 ORTHO05D005676 1.4e-34 150.6 183 49.2
Phvul.008G238800 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 2.4e-34 149.8 199 48.2
arahy.Tifrunner.gnm1.ann1.PKWW5Q Arachis hypogaea HOM05D004935 ORTHO05D005676 3.2e-34 149.4 176 54.5
Medtr5g077280 Medicago truncatula HOM05D004935 ORTHO05D005676 4.2e-34 149.1 187 50.8
LjContig00141g0002036 Lotus japonicus HOM05D004935 ORTHO05D005676 7.1e-34 148.3 195 47.7
Aa31LG11G13100 Aethionema arabicum HOM05D004935 ORTHO05D005676 5.1e-32 142.1 206 47.1
CDE11G1189 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 1.1e-31 141.0 212 42.9
Thhalv10014473m.g Eutrema salsugineum HOM05D004935 ORTHO05D005676 1.1e-31 141.0 195 48.7
EL10Ac2g03209 Beta vulgaris HOM05D004935 ORTHO05D005676 1.9e-31 140.2 178 49.4
GSVIVG01026318001 Vitis vinifera HOM05D004935 ORTHO05D005676 2.5e-31 139.8 105 78.1
VMungo0647G1435 Vigna mungo HOM05D004935 ORTHO05D005676 4.3e-31 139.0 199 46.2
Sp6g27610 Schrenkiella parvula HOM05D004935 ORTHO05D005676 1.3e-30 137.5 193 47.7
CDE05G2820 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 2.8e-30 136.3 211 44.5
BcaC03g18497 Brassica carinata HOM05D004935 ORTHO05D005676 3.4e-28 129.4 217 41.9
C02p08410 Brassica napus HOM05D004935 ORTHO05D005676 3.4e-28 129.4 217 41.9
BolC2t06759H Brassica oleracea HOM05D004935 ORTHO05D005676 3.4e-28 129.4 217 41.9
Oeu014715.1 Olea europaea HOM05D004935 ORTHO05D005676 9.9e-28 127.9 125 60.8
TAR629G3076 Trochodendron aralioides HOM05D004935 ORTHO05D005676 1.3e-27 127.5 230 42.2
ECA246G1322 Erigeron canadensis HOM05D004935 ORTHO05D005676 1.4e-26 124.0 124 56.5
HanXRQChr15g0489811 Helianthus annuus HOM05D004935 ORTHO05D005676 6.0e-25 118.6 205 42.0
A03p07850 Brassica napus HOM05D004935 ORTHO05D005676 3.0e-24 116.3 214 41.1
BraA03t10111Z Brassica rapa HOM05D000423 ORTHO05D005676 1.5e-23 114.0 196 41.3
Haze_14300 Corylus avellana HOM05D004935 ORTHO05D005676 1.3e-22 110.9 231 38.1
Sc11g0004530 Simmondsia chinensis HOM05D004935 ORTHO05D005676 6.2e-22 108.6 227 36.1
Mapoly0035s0070 Marchantia polymorpha HOM05D004935 ORTHO05D005676 3.1e-21 106.3 208 34.1
AL3G36180 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 2.6e-20 103.2 114 52.6
DCAR_003418 Daucus carota HOM05D004935 ORTHO05D005676 2.6e-20 103.2 104 63.5
AL92U10070 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 7.6e-20 101.7 110 55.5
AagrBONN_evm.TU.Sc2ySwM_117.2252 Anthoceros agrestis HOM05D004935 ORTHO05D005676 3.5e-17 92.8 166 36.1
Peaxi162Scf00085g00527 Petunia axillaris HOM05D004935 ORTHO05D005676 6.0e-17 92.0 85 63.5
CARHR196680 Cardamine hirsuta HOM05D004935 ORTHO05D005676 1.1e-15 87.8 85 65.9
AL6G14310 Arabidopsis lyrata HOM05D000097 ORTHO05D005676 1.9e-15 87.0 111 51.4
Zm00001eb099130 Zea mays HOM05D004935 ORTHO05D005676 3.3e-15 86.3 109 48.6
FAN19G0113 Fragaria x ananassa HOM05D004935 ORTHO05D005676 3.1e-13 79.7 102 48.0
Pp3c6_9570 Physcomitrium patens HOM05D004935 ORTHO05D005676 5.3e-13 79.0 131 38.9
Pp3c25_6290 Physcomitrium patens HOM05D004935 ORTHO05D005676 2.6e-12 76.6 151 36.4
Medtr5g077270 Medicago truncatula HOM05D007893 ORTHO05D010042 3.4e-12 76.3 81 60.5
Cpa.g.sc178.1 Carica papaya HOM05D004935 ORTHO05D005676 1.9e-10 70.5 102 42.2
SEGI_39153 Sequoiadendron giganteum HOM05D004935 ORTHO05D005676 5.5e-10 68.9 114 44.7
MSTRG.15645 Avicennia marina HOM05D004935 ORTHO05D005676 6.0e-09 65.5 96 40.6
CARHR196690 Cardamine hirsuta HOM05D004935 ORTHO05D005676 1.8e-08 63.9 87 41.4
DCAR_003417 Daucus carota HOM05D004935 ORTHO05D005676 2.3e-08 63.5 101 37.6


User provided reference genes

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