Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 0.0e+00 1415.6 799 100.0
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 0.0e+00 1206.4 743 91.9
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 2.1e-306 1055.4 747 83.1
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 1.4e-262 909.8 762 72.2
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 1.2e-120 438.3 789 47.8
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 4.4e-118 429.9 743 45.6
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 4.8e-117 426.4 741 47.8
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 5.9e-115 419.5 747 44.7
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 6.5e-114 416.0 810 44.4
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 3.0e-111 407.1 686 49.4
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 4.0e-111 406.8 717 47.0
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 8.3e-109 399.1 790 43.2
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 9.5e-105 385.6 796 42.5
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 1.0e-103 382.1 779 42.4
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 2.3e-103 380.9 784 44.3
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 3.0e-103 380.6 778 42.5
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 6.8e-103 379.4 772 44.3
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 6.8e-103 379.4 769 44.6
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 6.8e-103 379.4 769 44.6
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 6.8e-103 379.4 786 43.8
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 1.5e-102 378.3 809 44.3
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 2.2e-101 374.4 770 43.8
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 8.3e-101 372.5 771 44.6
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 5.4e-100 369.8 795 42.1
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 1.3e-98 365.2 712 46.5
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 2.3e-98 364.4 796 42.8
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 1.2e-96 358.6 746 45.3
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 2.8e-96 357.5 786 44.4
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 1.0e-95 355.5 801 44.7
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 3.4e-94 350.5 711 47.8
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 7.5e-94 349.4 790 43.7
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 1.7e-93 348.2 804 41.8
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 1.7e-93 348.2 770 43.1
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 1.8e-92 344.7 815 41.7
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 3.2e-92 344.0 718 42.1
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 2.0e-91 341.3 814 40.3
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 2.7e-91 340.9 721 42.4
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 2.3e-90 337.8 769 43.3
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 3.0e-90 337.4 693 45.6
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 3.0e-90 337.4 796 42.2
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 1.1e-89 335.5 778 42.5
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 1.5e-89 335.1 782 42.5
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 1.4e-87 328.6 771 40.9
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 2.6e-86 324.3 709 41.7
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 7.5e-86 322.8 772 41.1
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 1.7e-85 321.6 794 42.3
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 2.0e-83 314.7 776 39.7
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 2.5e-81 307.8 685 41.3
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 1.1e-79 302.4 793 38.6
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 1.4e-79 302.0 765 39.0
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 1.4e-79 302.0 787 40.2
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 1.8e-79 301.6 764 42.4
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 2.2e-77 294.7 702 42.7
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 2.9e-77 294.3 659 41.1
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 4.1e-76 290.4 816 39.3
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 5.4e-76 290.0 722 39.8
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 9.2e-76 289.3 815 39.0
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 7.8e-75 286.2 723 39.4
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 6.6e-74 283.1 763 40.5
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 1.5e-73 282.0 554 44.9
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 1.1e-71 275.8 766 41.8
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 2.0e-70 271.6 701 40.1
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 9.9e-70 269.2 661 38.9
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 1.1e-68 265.8 584 42.0
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 1.4e-68 265.4 701 37.2
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 1.9e-68 265.0 815 38.0
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 1.6e-67 261.9 657 37.9
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 3.5e-67 260.8 772 38.9
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 6.0e-67 260.0 766 37.2
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 6.6e-66 256.5 768 35.5
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 1.5e-65 255.4 738 39.2
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 1.5e-65 255.4 742 38.7
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 1.9e-65 255.0 706 39.2
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 4.3e-65 253.8 622 38.9
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 4.3e-65 253.8 659 38.7
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 1.6e-64 251.9 757 36.6
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 1.8e-63 248.4 728 37.0
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 4.0e-63 247.3 405 46.9
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 6.9e-63 246.5 746 36.2
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 2.6e-62 244.6 751 37.7
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 4.4e-62 243.8 758 37.5
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 4.4e-62 243.8 733 37.8
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 3.8e-61 240.7 744 38.6
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 1.1e-60 239.2 775 36.5
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 3.5e-59 234.2 697 36.4
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 1.0e-58 232.6 614 41.7
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 3.4e-54 217.6 779 35.3
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 4.5e-54 217.2 792 34.2
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 7.6e-54 216.5 773 35.2
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 2.9e-53 214.5 744 36.2
MELO3C023611.2 Cucumis melo HOM05D003795 ORTHO05D004308 5.4e-52 210.3 112 93.8
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 2.1e-51 208.4 688 37.8
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 3.5e-51 207.6 667 36.3
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 4.6e-51 207.2 732 33.5
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 3.0e-50 204.5 781 32.8
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 5.1e-50 203.8 731 32.7
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 8.7e-50 203.0 424 44.6
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 1.9e-49 201.8 602 36.7
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 2.5e-49 201.4 755 33.0
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 5.6e-49 200.3 730 34.4
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 4.8e-48 197.2 752 36.2
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 6.2e-48 196.8 692 33.1
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 8.1e-48 196.4 632 38.4
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 1.8e-47 195.3 645 34.7
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 2.4e-47 194.9 628 36.0
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 9.0e-47 193.0 718 33.7
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 3.8e-45 187.6 741 33.3
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 8.4e-45 186.4 648 34.7
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 5.5e-44 183.7 784 33.8
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 7.1e-44 183.3 620 34.7
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 7.9e-43 179.9 260 47.3
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 5.1e-42 177.2 646 34.1
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 1.9e-41 175.3 445 43.4
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 1.9e-41 175.3 482 36.9
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 2.5e-41 174.9 593 35.4
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 6.2e-40 170.2 762 33.5
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 2.4e-39 168.3 761 32.7
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 3.1e-39 167.9 634 34.1
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 4.0e-39 167.5 706 31.2
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 5.3e-39 167.2 769 31.2
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 2.6e-38 164.9 764 32.9
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 2.6e-38 164.9 767 31.7
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 5.8e-38 163.7 624 33.8
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 1.0e-37 162.9 668 33.8
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 1.7e-37 162.2 730 33.0
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 3.8e-37 161.0 582 33.5
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 2.5e-36 158.3 758 33.4
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 3.5e-35 154.5 420 44.8
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 1.0e-34 152.9 706 33.7
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 7.4e-33 146.7 442 39.6
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 7.4e-33 146.7 704 32.0
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 1.6e-32 145.6 754 30.4
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 1.6e-32 145.6 697 31.6
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 6.3e-32 143.7 702 30.2
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 5.3e-31 140.6 588 33.2
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 1.2e-30 139.4 706 30.5
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 2.6e-30 138.3 231 41.6
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 1.3e-29 136.0 419 35.3
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 4.2e-28 131.0 756 30.7
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 2.1e-27 128.6 623 31.6
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 1.8e-26 125.6 349 37.5
Prupe.7G058700 Prunus persica HOM05D003795 ORTHO05D004308 5.1e-26 124.0 406 42.1
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 5.7e-25 120.6 237 36.7
VMungo1383G0923 Vigna mungo HOM05D003795 ORTHO05D004308 1.3e-24 119.4 139 54.0
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 2.2e-24 118.6 501 30.5
BcaB04g16989 Brassica carinata HOM05D003795 ORTHO05D004308 1.3e-21 109.4 641 30.6
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 1.7e-21 109.0 730 27.5
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 2.2e-21 108.6 719 29.5
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 2.5e-20 105.1 503 28.4
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 2.5e-20 105.1 503 28.4
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 1.0e-18 99.8 693 31.0
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 2.3e-18 98.6 157 42.7
CDE07G0419 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 5.1e-18 97.4 649 28.2
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 6.7e-18 97.1 496 28.6
Lsat_1_v5_gn_8_114961 Lactuca sativa HOM05D003795 ORTHO05D004308 8.8e-18 96.7 515 31.1
Prupe.7G058800 Prunus persica HOM05D003795 ORTHO05D004308 5.7e-17 94.0 138 50.0
BraA08t32141Z Brassica rapa HOM05D003795 ORTHO05D004308 6.3e-16 90.5 527 29.4
Sabra16G0322400 Salix brachista HOM05D003795 ORTHO05D004308 1.4e-12 79.3 134 42.5
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 2.7e-11 75.1 157 42.7
AUR62010625 Chenopodium quinoa HOM05D003795 ORTHO05D004308 6.1e-11 73.9 216 38.9
Oeu012503.1 Olea europaea HOM05D003795 ORTHO05D004308 1.8e-10 72.4 341 29.6
Os02g0638200 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 8.8e-10 70.1 242 29.8
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 2.0e-09 68.9 176 38.6
Lalb_Chr10g0103871 Lupinus albus HOM05D003795 ORTHO05D004308 2.6e-09 68.6 127 40.2
HanXRQChr09g0258951 Helianthus annuus HOM05D003795 ORTHO05D004308 7.4e-09 67.0 277 32.1
AL6G17260 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 2.2e-08 65.5 236 31.4


User provided reference genes

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