Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C025106.2 Cucumis melo HOM05D004787 ORTHO05D006972 1.3e-291 1005.7 527 100.0
CsaV3_5G024370 Cucumis sativus L. HOM05D004787 ORTHO05D006972 5.0e-288 993.8 527 98.7
ClCG01G008420 Citrullus lanatus HOM05D004787 ORTHO05D006972 2.9e-280 968.0 521 97.1
Sed0001995 Sechium edule HOM05D004787 ORTHO05D006972 7.3e-247 857.1 471 94.5
Manes.02G082200 Manihot esculenta HOM05D004787 ORTHO05D006972 9.5e-247 856.7 539 82.9
Ciclev10011482m.g Citrus clementina HOM05D004787 ORTHO05D006972 7.6e-244 847.0 527 82.7
Ca_15115_v3 Cicer arietinum L. HOM05D004787 ORTHO05D006972 2.2e-243 845.5 533 81.2
Thecc.04G058600 Theobroma cacao HOM05D004787 ORTHO05D006972 2.4e-242 842.0 514 83.1
TPR.G37333 Trifolium pratense HOM05D004787 ORTHO05D006972 7.1e-242 840.5 530 81.7
Psat5g143840 Pisum sativum HOM05D004787 ORTHO05D006972 1.2e-241 839.7 527 80.6
Nn4g24844 Nelumbo nucifera HOM05D004787 ORTHO05D006972 2.7e-241 838.6 533 81.1
Glyma.18G045800 Glycine max HOM05D004787 ORTHO05D006972 7.8e-241 837.0 527 82.0
Phvul.006G085100 Phaseolus vulgaris HOM05D004787 ORTHO05D006972 6.6e-240 833.9 528 81.4
TWI53G0480 Tripterygium wilfordii HOM05D004787 ORTHO05D006972 8.7e-240 833.6 503 83.7
Medtr3g064180 Medicago truncatula HOM05D004787 ORTHO05D006972 1.5e-239 832.8 521 81.6
arahy.Tifrunner.gnm1.ann1.0Y5IZW Arachis hypogaea HOM05D004787 ORTHO05D006972 1.9e-239 832.4 550 78.9
Lj6g0012338 Lotus japonicus HOM05D004787 ORTHO05D006972 1.9e-239 832.4 538 79.7
Lalb_Chr18g0053891 Lupinus albus HOM05D004787 ORTHO05D006972 1.9e-239 832.4 542 79.9
MD11G1181900 Malus domestica HOM05D004787 ORTHO05D006972 2.5e-239 832.0 527 80.8
Gohir.A12G052700 Gossypium hirsutum HOM05D004787 ORTHO05D006972 4.3e-239 831.2 514 82.5
Duzib138G0253 Durio zibethinus HOM05D004787 ORTHO05D006972 7.3e-239 830.5 514 82.7
Prupe.3G013000 Prunus persica HOM05D004787 ORTHO05D006972 9.6e-239 830.1 531 80.0
Gorai.008G054500 Gossypium raimondii HOM05D004787 ORTHO05D006972 2.8e-238 828.6 514 82.3
arahy.Tifrunner.gnm1.ann1.QP3PIR Arachis hypogaea HOM05D004787 ORTHO05D006972 1.1e-237 826.6 554 78.3
Gohir.D12G051200 Gossypium hirsutum HOM05D004787 ORTHO05D006972 1.1e-237 826.6 514 82.1
TAR629G0710 Trochodendron aralioides HOM05D004787 ORTHO05D006972 3.1e-237 825.1 531 79.7
Cfa008000 Carpinus fangiana HOM05D004787 ORTHO05D006972 6.9e-237 823.9 515 82.7
Atru.chr1.1965 Acer truncatum HOM05D004787 ORTHO05D006972 1.5e-236 822.8 502 82.9
QL02p054528 Quercus lobata HOM05D004787 ORTHO05D006972 7.6e-236 820.5 521 81.0
PSO063G5381 Papaver somniferum HOM05D004787 ORTHO05D006972 9.9e-236 820.1 531 78.7
CSS0018052 Camellia sinensis var. sinensis HOM05D004787 ORTHO05D006972 3.8e-235 818.1 541 78.6
Hma1.2p1_0034F.1_g021480 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 5.4e-234 814.3 523 79.7
Eucgr.F02919 Eucalyptus grandis HOM05D004787 ORTHO05D006972 7.1e-234 813.9 538 79.0
CiPaw.03G008000 Carya illinoinensis HOM05D004787 ORTHO05D006972 9.3e-234 813.5 544 78.9
CDE05G1440 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 1.2e-233 813.1 516 79.7
PGR004G1381 Punica granatum HOM05D004787 ORTHO05D006972 1.2e-233 813.1 516 80.6
PSO782G3524 Papaver somniferum HOM05D004787 ORTHO05D006972 1.6e-233 812.8 531 78.3
Dinv28256 Davidia involucrata HOM05D004787 ORTHO05D006972 4.6e-233 811.2 539 78.7
THA.LOC104820926 Tarenaya hassleriana HOM05D004787 ORTHO05D006972 2.8e-230 802.0 517 79.9
Aqoxy3G04198 Aquilegia oxysepala HOM05D004787 ORTHO05D006972 3.1e-229 798.5 501 81.4
RcHm_v2.0_Chr3g0487991 Rosa chinensis HOM05D004787 ORTHO05D006972 2.2e-227 792.3 515 78.8
Hund06861 Selenicereus undatus HOM05D004787 ORTHO05D006972 1.4e-226 789.6 533 76.5
Sopen02g026040 Solanum pennellii HOM05D004787 ORTHO05D006972 7.1e-226 787.3 501 79.0
Solyc02g081410.3 Solanum lycopersicum HOM05D004787 ORTHO05D006972 2.1e-225 785.8 501 78.8
PGSC0003DMG400019729 Solanum tuberosum HOM05D004787 ORTHO05D006972 2.7e-225 785.4 501 78.8
Potri.004G076600 Populus trichocarpa HOM05D004787 ORTHO05D006972 1.3e-224 783.1 543 74.0
MSTRG.15622 Avicennia marina HOM05D004787 ORTHO05D006972 1.8e-224 782.7 501 78.2
FvH4_1g27560 Fragaria vesca HOM05D004787 ORTHO05D006972 1.8e-224 782.7 512 77.1
FAN28G1537 Fragaria x ananassa HOM05D004787 ORTHO05D006972 4.3e-223 778.1 526 75.3
Lsat_1_v5_gn_3_69520 Lactuca sativa HOM05D004787 ORTHO05D006972 1.4e-221 773.1 546 74.2
SGA_v2.0_scaffold45G17100 Striga asiatica HOM05D004787 ORTHO05D006972 4.0e-221 771.5 509 77.2
CANSAT35G0608 Cannabis sativa HOM05D004787 ORTHO05D006972 6.9e-221 770.8 519 77.5
AT3G02710 Arabidopsis thaliana HOM05D004787 ORTHO05D006972 1.2e-220 770.0 508 77.6
Carub.0003s0181 Capsella rubella HOM05D004787 ORTHO05D006972 3.4e-220 768.5 502 78.1
AL3G12100 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 5.8e-220 767.7 502 78.3
Migut.K00983 Erythranthe guttata HOM05D004787 ORTHO05D006972 1.3e-219 766.5 500 76.4
Thhalv10020476m.g Eutrema salsugineum HOM05D004787 ORTHO05D006972 4.9e-219 764.6 503 76.9
VMungo0540G0637 Vigna mungo HOM05D004787 ORTHO05D006972 8.4e-219 763.8 528 76.5
Sp3g01740 Schrenkiella parvula HOM05D004787 ORTHO05D006972 2.5e-218 762.3 504 77.2
ECA246G0632 Erigeron canadensis HOM05D004787 ORTHO05D006972 4.2e-218 761.5 519 73.0
FAN19G0382 Fragaria x ananassa HOM05D004787 ORTHO05D006972 4.2e-218 761.5 512 75.8
MBI06_g02537_MAGBIO Magnolia biondii HOM05D004787 ORTHO05D006972 2.1e-217 759.2 548 73.0
BNapus_Darmor_BZH_scaffold_99p00220 Brassica napus HOM05D004787 ORTHO05D006972 1.8e-216 756.1 504 76.4
FAN26G3076 Fragaria x ananassa HOM05D004787 ORTHO05D006972 6.7e-216 754.2 512 75.2
CARHR076710 Cardamine hirsuta HOM05D004787 ORTHO05D006972 8.7e-216 753.8 502 77.1
FAN28G1012 Fragaria x ananassa HOM05D004787 ORTHO05D006972 8.7e-216 753.8 512 74.8
Haze_14069 Corylus avellana HOM05D004787 ORTHO05D006972 1.9e-215 752.7 515 77.1
EL10Ac4g08906 Beta vulgaris HOM05D004787 ORTHO05D006972 3.3e-215 751.9 533 74.1
Actinidia40400 Actinidia chinensis HOM05D004787 ORTHO05D006972 7.4e-215 750.7 543 73.1
HanXRQChr16g0532401 Helianthus annuus HOM05D004787 ORTHO05D006972 1.6e-214 749.6 521 73.9
Aa31LG5G13180 Aethionema arabicum HOM05D004787 ORTHO05D006972 2.8e-214 748.8 525 73.9
BraA01t04622Z Brassica rapa HOM05D004787 ORTHO05D006972 1.8e-213 746.1 520 74.0
BolC1t05882H Brassica oleracea HOM05D004787 ORTHO05D006972 3.1e-213 745.3 511 75.0
Peaxi162Scf00344g02023 Petunia axillaris HOM05D004787 ORTHO05D006972 1.2e-212 743.4 501 76.0
Lj4C250G12 Lonicera japonica HOM05D004787 ORTHO05D006972 5.8e-212 741.1 527 73.2
vmacro20447 Vaccinium macrocarpon HOM05D004787 ORTHO05D006972 1.2e-209 733.4 626 65.0
Nitab4.5_0003412g0040 Nicotiana tabacum HOM05D004787 ORTHO05D006972 5.1e-208 728.0 608 65.6
SEGI_38823 Sequoiadendron giganteum HOM05D004787 ORTHO05D006972 6.7e-208 727.6 515 72.2
Rhsim07G0211400 Rhododendron simsii HOM05D004787 ORTHO05D006972 3.3e-207 725.3 538 71.9
AUR62037503 Chenopodium quinoa HOM05D004787 ORTHO05D006972 7.4e-207 724.2 528 72.2
Sabra04G0050800 Salix brachista HOM05D004787 ORTHO05D006972 7.4e-207 724.2 543 69.8
Ah.04g162910 Amaranthus hybridus HOM05D004787 ORTHO05D006972 9.7e-207 723.8 506 74.9
DCAR_003396 Daucus carota HOM05D004787 ORTHO05D006972 1.8e-205 719.5 516 73.3
Zm00001eb259490 Zea mays HOM05D004787 ORTHO05D006972 2.0e-196 689.5 516 69.4
ATR0618G058 Amborella trichopoda HOM05D004787 ORTHO05D006972 1.1e-194 683.7 484 73.6
Mapoly0108s0041 Marchantia polymorpha HOM05D004787 ORTHO05D006972 3.6e-193 678.7 514 68.1
Os02g0831300 Oryza sativa ssp. japonica HOM05D004787 ORTHO05D006972 4.7e-193 678.3 516 67.4
Nitab4.5_0000483g0190 Nicotiana tabacum HOM05D004787 ORTHO05D006972 3.0e-192 675.6 592 63.2
AUR62004748 Chenopodium quinoa HOM05D004787 ORTHO05D006972 9.7e-191 670.6 526 68.4
SalBow5G5112 Salvia bowleyana HOM05D004787 ORTHO05D006972 9.7e-191 670.6 516 69.2
unitig_32.g10735 Utricularia gibba HOM05D004787 ORTHO05D006972 3.5e-188 662.1 556 63.3
Hma1.2p1_0034F.1_g021490 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 4.7e-185 651.7 424 78.8
COL.COLO4_06952 Corchorus olitorius HOM05D004787 ORTHO05D006972 4.8e-182 641.7 444 75.2
Pp3c23_13180 Physcomitrium patens HOM05D004787 ORTHO05D006972 1.9e-178 629.8 533 61.5
Pp3c23_13183 Physcomitrium patens HOM05D004787 ORTHO05D006972 1.9e-178 629.8 533 61.5
AagrBONN_evm.TU.Sc2ySwM_228.1941__1942 Anthoceros agrestis HOM05D004787 ORTHO05D006972 1.6e-169 600.1 480 64.8
Sc09g0004590 Simmondsia chinensis HOM05D004787 ORTHO05D006972 3.6e-169 599.0 450 71.3
HPP92_022084 Vanilla planifolia HOM05D004787 ORTHO05D006972 7.2e-162 574.7 399 75.2
CBR_g66787 Chara braunii HOM05D004787 ORTHO05D006972 1.2e-161 573.9 521 57.2
SMO276G0035 Selaginella moellendorffii HOM05D004787 ORTHO05D006972 1.6e-156 557.0 487 59.3
BNapus_Darmor_BZH_scaffold_122p00190 Brassica napus HOM05D004787 ORTHO05D006972 2.9e-155 552.7 360 78.1
Oeu022144.1 Olea europaea HOM05D004787 ORTHO05D006972 3.6e-153 545.8 382 74.9
Cpa.g.sc108.2 Carica papaya HOM05D004787 ORTHO05D006972 8.3e-150 534.6 330 82.7
CAN.G809.96 Capsicum annuum HOM05D004787 ORTHO05D006972 1.5e-143 513.8 338 77.8
Lsat_1_v5_gn_3_69560 Lactuca sativa HOM05D004787 ORTHO05D006972 4.7e-129 465.7 322 74.8
GSVIVG01001945001 Vitis vinifera HOM05D004787 ORTHO05D006972 3.5e-116 422.9 249 83.5
GSVIVG01035282001 Vitis vinifera HOM05D004787 ORTHO05D006972 6.0e-116 422.2 249 83.5
HanXRQChr16g0532221 Helianthus annuus HOM05D004787 ORTHO05D006972 1.8e-107 394.0 448 53.3
Cre02.g093300 Chlamydomonas reinhardtii HOM05D004787 ORTHO05D006972 4.0e-104 382.9 507 43.8
AL1G49080 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 4.9e-102 375.9 240 78.8
MCO05G673 Micromonas commoda HOM05D004787 ORTHO05D006972 1.3e-97 361.3 487 43.5
PRCOL_00000524 Prasinoderma coloniale HOM05D004787 ORTHO05D006972 6.5e-86 322.4 490 40.0
CDE02G3895 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 1.7e-78 297.7 328 54.0
Cc07_g12650 Coffea canephora HOM05D004787 ORTHO05D006972 3.1e-72 276.9 173 79.2
PSO409G0053 Papaver somniferum HOM05D004787 ORTHO05D006972 2.2e-54 217.6 494 36.0
Cpa.g.sc108.3 Carica papaya HOM05D004787 ORTHO05D006972 7.2e-53 212.6 265 49.4
Cfa023088 Carpinus fangiana HOM05D004787 ORTHO05D006972 1.7e-49 201.4 504 33.5
PSO339G1514 Papaver somniferum HOM05D004787 ORTHO05D303367 4.9e-49 199.9 488 34.4
Oeu031707.1 Olea europaea HOM05D004787 ORTHO05D006972 1.0e-46 192.2 117 81.2
Medtr8g023320 Medicago truncatula HOM05D004787 ORTHO05D006972 1.3e-38 165.2 115 73.0
PSO675G3772 Papaver somniferum HOM05D004787 ORTHO05D302583 3.9e-38 163.7 482 32.2
PSO478G0028 Papaver somniferum HOM05D004787 ORTHO05D006972 1.6e-36 158.3 293 39.6
PSO409G0034 Papaver somniferum HOM05D004787 ORTHO05D006972 3.2e-32 144.1 489 30.3
PSO407G0282 Papaver somniferum HOM05D004787 ORTHO05D006972 1.5e-29 135.2 498 29.9
HPP92_022083 Vanilla planifolia HOM05D004787 ORTHO05D006972 3.1e-27 127.5 85 70.6
PSO063G0274 Papaver somniferum HOM05D004787 ORTHO05D006972 5.2e-27 126.7 331 35.3
PSO339G2591 Papaver somniferum HOM05D004787 ORTHO05D006972 2.0e-26 124.8 287 36.9
PSO339G2032 Papaver somniferum HOM05D004787 ORTHO05D006972 2.6e-26 124.4 287 36.6
PSO675G1486 Papaver somniferum HOM05D004787 ORTHO05D006972 9.8e-26 122.5 296 34.5
PSO198G0032 Papaver somniferum HOM05D004787 ORTHO05D006972 1.2e-23 115.5 210 40.0
PSO478G4874 Papaver somniferum HOM05D004787 ORTHO05D006972 3.5e-23 114.0 238 38.7
PSO063G0043 Papaver somniferum HOM05D004787 ORTHO05D006972 1.3e-22 112.1 353 32.0
PSO675G0768 Papaver somniferum HOM05D004787 ORTHO05D302482 2.3e-22 111.3 275 32.0
PSO063G3648 Papaver somniferum HOM05D004787 ORTHO05D006972 4.3e-21 107.1 158 41.8
PSO063G1019 Papaver somniferum HOM05D004787 ORTHO05D006972 2.8e-20 104.4 209 39.2
PSO063G5300 Papaver somniferum HOM05D004787 ORTHO05D006972 1.4e-19 102.1 158 40.5
HanXRQChr16g0532231 Helianthus annuus HOM05D004787 ORTHO05D006972 5.2e-19 100.1 59 76.3
PSO541G6299 Papaver somniferum HOM05D004787 ORTHO05D302708 2.0e-18 98.2 328 28.7
Zm00001eb168130 Zea mays HOM05D004787 ORTHO05D001664 2.0e-18 98.2 74 60.8
PSO478G1956 Papaver somniferum HOM05D004787 ORTHO05D006972 3.4e-18 97.4 208 38.5
PSO478G2704 Papaver somniferum HOM05D004787 ORTHO05D303020 5.8e-18 96.7 388 28.9
PSO541G2889 Papaver somniferum HOM05D004787 ORTHO05D303989 3.2e-16 90.9 233 31.3
PSO063G2684 Papaver somniferum HOM05D004787 ORTHO05D304724 5.4e-16 90.1 428 29.0
PSO063G4343 Papaver somniferum HOM05D004787 ORTHO05D304254 1.6e-15 88.6 396 29.3
PSO170G0972 Papaver somniferum HOM05D004787 ORTHO05D303930 1.1e-11 75.9 356 28.1
PSO384G2298 Papaver somniferum HOM05D004787 ORTHO05D006972 8.9e-11 72.8 140 39.3
PSO384G4943 Papaver somniferum HOM05D004787 ORTHO05D303805 4.9e-09 67.0 351 29.1
arahy.Tifrunner.gnm1.ann1.0EHY87 Arachis hypogaea HOM05D004017 ORTHO05D004612 1.7e-06 58.5 57 56.1
FAN21G2314 Fragaria x ananassa HOM05D027463 ORTHO05D206097 2.3e-06 58.2 48 62.5
FAN24G2421 Fragaria x ananassa HOM05D000203 ORTHO05D035425 5.1e-06 57.0 47 61.7


User provided reference genes

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