Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C025087.2 Cucumis melo HOM05D005105 ORTHO05D006244 0.0e+00 1181.4 571 100.0
CsaV3_5G024330 Cucumis sativus L. HOM05D005105 ORTHO05D006244 0.0e+00 1082.8 571 92.6
ClCG01G008700 Citrullus lanatus HOM05D005105 ORTHO05D006244 1.7e-294 1015.4 576 87.5
Sed0022814 Sechium edule HOM05D005105 ORTHO05D006244 9.3e-280 966.5 578 84.1
Prupe.3G310100 Prunus persica HOM05D005105 ORTHO05D006244 7.2e-216 754.2 582 64.8
Thecc.04G041900 Theobroma cacao HOM05D005105 ORTHO05D006244 1.6e-215 753.1 587 64.1
MD09G1007000 Malus domestica HOM05D005105 ORTHO05D006244 8.0e-215 750.7 588 65.6
RcHm_v2.0_Chr2g0176111 Rosa chinensis HOM05D005105 ORTHO05D006244 1.4e-214 750.0 505 71.1
QL02p070577 Quercus lobata HOM05D005105 ORTHO05D006244 4.0e-214 748.4 583 64.0
GSVIVG01033038001 Vitis vinifera HOM05D005105 ORTHO05D006244 9.8e-213 743.8 499 71.1
FAN14G3030 Fragaria x ananassa HOM05D005105 ORTHO05D006244 1.3e-212 743.4 579 64.6
arahy.Tifrunner.gnm1.ann1.JMV5LB Arachis hypogaea HOM05D005105 ORTHO05D006244 3.1e-211 738.8 597 62.3
FAN02G1943 Fragaria x ananassa HOM05D005105 ORTHO05D006244 5.4e-211 738.0 572 65.0
Manes.04G087600 Manihot esculenta HOM05D005105 ORTHO05D006244 5.4e-211 738.0 588 62.9
FAN09G0463 Fragaria x ananassa HOM05D005105 ORTHO05D006244 1.6e-210 736.5 572 65.0
CANSAT21G1015 Cannabis sativa HOM05D005105 ORTHO05D006244 3.5e-210 735.3 582 63.1
Ciclev10014761m.g Citrus clementina HOM05D005105 ORTHO05D006244 4.5e-210 734.9 589 62.5
PGR142G1816 Punica granatum HOM05D005105 ORTHO05D006244 2.3e-209 732.6 580 63.3
TAR629G0447 Trochodendron aralioides HOM05D005105 ORTHO05D006244 3.8e-209 731.9 585 62.6
Duzib147G0369 Durio zibethinus HOM05D005105 ORTHO05D006244 6.6e-209 731.1 584 62.5
Lj1g0026609 Lotus japonicus HOM05D005105 ORTHO05D006244 9.5e-208 727.2 583 62.6
Solyc02g082210.4 Solanum lycopersicum HOM05D005105 ORTHO05D006244 1.2e-207 726.9 570 62.3
FAN05G2765 Fragaria x ananassa HOM05D005105 ORTHO05D006244 1.6e-207 726.5 527 68.3
Potri.001G325500 Populus trichocarpa HOM05D005105 ORTHO05D006244 1.6e-207 726.5 570 63.7
Gohir.A07G231500 Gossypium hirsutum HOM05D005105 ORTHO05D006244 8.0e-207 724.2 584 62.3
Gorai.001G274700 Gossypium raimondii HOM05D005105 ORTHO05D006244 1.8e-206 723.0 583 61.7
Cfa007197 Carpinus fangiana HOM05D005105 ORTHO05D006244 4.0e-206 721.8 584 62.2
Gohir.D07G238700 Gossypium hirsutum HOM05D005105 ORTHO05D006244 8.9e-206 720.7 583 61.9
TWI34G1796 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 4.4e-205 718.4 584 61.5
TWI60G0613 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 9.8e-205 717.2 583 61.4
Gorai.006G044700 Gossypium raimondii HOM05D005105 ORTHO05D006244 2.8e-204 715.7 609 59.4
Cc07_g01060 Coffea canephora HOM05D005105 ORTHO05D006244 3.7e-204 715.3 571 61.8
Oeu020395.1 Olea europaea HOM05D005105 ORTHO05D006244 5.4e-203 711.4 583 61.7
Glyma.16G052500 Glycine max HOM05D005105 ORTHO05D006244 1.3e-201 706.8 573 62.1
CiPaw.03G004800 Carya illinoinensis HOM05D005105 ORTHO05D006244 2.3e-201 706.1 510 68.0
Nitab4.5_0011381g0040 Nicotiana tabacum HOM05D005105 ORTHO05D006244 2.9e-201 705.7 572 61.5
Lalb_Chr00c40g0412501 Lupinus albus HOM05D005105 ORTHO05D006244 5.0e-201 704.9 577 61.2
Nn3g16360 Nelumbo nucifera HOM05D005105 ORTHO05D006244 5.0e-201 704.9 501 68.3
Medtr7g026520 Medicago truncatula HOM05D005105 ORTHO05D006244 1.5e-200 703.4 589 60.3
arahy.Tifrunner.gnm1.ann1.B1CDD0 Arachis hypogaea HOM05D005105 ORTHO05D006244 7.3e-200 701.0 595 59.8
Haze_14911 Corylus avellana HOM05D005105 ORTHO05D006244 9.5e-200 700.7 567 62.8
PSO017G6125 Papaver somniferum HOM05D005105 ORTHO05D006244 1.6e-199 699.9 507 68.2
DCAR_015209 Daucus carota HOM05D005105 ORTHO05D006244 2.8e-199 699.1 519 65.5
Ca_07318_v3 Cicer arietinum L. HOM05D005105 ORTHO05D006244 2.3e-198 696.0 590 60.3
Sc09g0007730 Simmondsia chinensis HOM05D005105 ORTHO05D006244 8.9e-198 694.1 522 65.1
Migut.F00035 Erythranthe guttata HOM05D005105 ORTHO05D006244 1.2e-197 693.7 492 66.7
GSVIVG01008594001 Vitis vinifera HOM05D005105 ORTHO05D006244 3.4e-197 692.2 500 66.4
EL10Ac6g15451 Beta vulgaris HOM05D005105 ORTHO05D006244 7.5e-197 691.0 500 65.6
SalBow4G0131 Salvia bowleyana HOM05D005105 ORTHO05D006244 9.8e-197 690.6 497 66.6
AUR62003394 Chenopodium quinoa HOM05D005105 ORTHO05D006244 2.9e-196 689.1 503 65.8
PSO478G4366 Papaver somniferum HOM05D005105 ORTHO05D006244 3.7e-196 688.7 578 60.7
Phvul.001G090000 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 1.1e-195 687.2 575 60.9
VMungo1383G1917 Vigna mungo HOM05D005105 ORTHO05D006244 1.4e-195 686.8 578 60.0
C07p36060 Brassica napus HOM05D005105 ORTHO05D006244 1.9e-195 686.4 581 59.0
Psat3g181600 Pisum sativum HOM05D005105 ORTHO05D006244 1.9e-195 686.4 590 59.2
BraA06t27085Z Brassica rapa HOM05D005105 ORTHO05D006244 2.4e-195 686.0 581 59.4
Lj2g0026571 Lotus japonicus HOM05D005105 ORTHO05D006244 5.4e-195 684.9 574 60.6
Aqoxy5G03244_Aqoxy5G03245 Aquilegia oxysepala HOM05D005105 ORTHO05D006244 1.6e-194 683.3 588 59.0
Rhsim08G0041000 Rhododendron simsii HOM05D005105 ORTHO05D006244 2.3e-193 679.5 571 60.2
Sp2g16080 Schrenkiella parvula HOM05D005105 ORTHO05D006244 2.3e-193 679.5 584 58.7
Thhalv10003939m.g Eutrema salsugineum HOM05D005105 ORTHO05D006244 3.9e-193 678.7 584 58.4
Carub.0005s0514 Capsella rubella HOM05D005105 ORTHO05D006244 4.3e-192 675.2 582 58.6
AT3G26950 Arabidopsis thaliana HOM05D005105 ORTHO05D006244 7.3e-192 674.5 578 58.3
HanXRQChr17g0551611 Helianthus annuus HOM05D005105 ORTHO05D006244 1.6e-191 673.3 566 59.7
Glyma.16G146100 Glycine max HOM05D005105 ORTHO05D006244 6.2e-191 671.4 586 58.7
BcaC06g31032 Brassica carinata HOM05D005105 ORTHO05D006244 5.2e-190 668.3 509 64.0
HanXRQChr05g0155591 Helianthus annuus HOM05D005105 ORTHO05D006244 6.8e-190 667.9 545 61.3
AL5G15980 Arabidopsis lyrata HOM05D005105 ORTHO05D006244 1.2e-189 667.2 579 57.5
THA.LOC104825638 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 1.5e-189 666.8 586 57.7
Lj7A613T64 Lonicera japonica HOM05D005105 ORTHO05D006244 1.7e-188 663.3 552 60.7
Atru.chr6.2614 Acer truncatum HOM05D005105 ORTHO05D006244 1.9e-187 659.8 554 61.4
AUR62029433 Chenopodium quinoa HOM05D005105 ORTHO05D006244 3.2e-187 659.1 503 63.6
vmacro19146 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 1.2e-186 657.1 623 55.2
BcaC06g33873 Brassica carinata HOM05D005105 ORTHO05D006244 4.6e-186 655.2 581 57.0
BolC7t44120H Brassica oleracea HOM05D005105 ORTHO05D006244 2.3e-185 652.9 581 56.8
VMungo0464G0185 Vigna mungo HOM05D005105 ORTHO05D006244 3.9e-185 652.1 568 59.7
ECA246G4542 Erigeron canadensis HOM05D005105 ORTHO05D006244 6.6e-185 651.4 566 57.6
Nitab4.5_0011717g0030 Nicotiana tabacum HOM05D005105 ORTHO05D006244 2.5e-184 649.4 571 59.0
Sabra16G0208000 Salix brachista HOM05D005105 ORTHO05D006244 4.3e-184 648.7 484 64.9
A06p41600 Brassica napus HOM05D005105 ORTHO05D006244 2.1e-183 646.4 581 56.8
vmacro18364 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 1.4e-182 643.7 645 53.2
Lsat_1_v5_gn_0_23961 Lactuca sativa HOM05D005105 ORTHO05D006244 3.1e-182 642.5 560 59.3
ATR0582G106 Amborella trichopoda HOM05D005105 ORTHO05D006244 5.2e-182 641.7 521 60.5
THA.LOC104805319 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 8.9e-182 641.0 588 55.4
DCAR_007509 Daucus carota HOM05D005105 ORTHO05D006244 3.0e-177 625.9 581 55.9
Aa31LG2G5630 Aethionema arabicum HOM05D005105 ORTHO05D006244 3.3e-176 622.5 609 52.9
Phvul.004G070700 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 3.3e-176 622.5 592 55.1
Actinidia36228 Actinidia chinensis HOM05D005105 ORTHO05D006244 3.6e-175 619.0 520 61.2
CDE06G1277 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 8.4e-172 607.8 507 59.4
Duzib264G1310 Durio zibethinus HOM05D005105 ORTHO05D006244 2.0e-165 586.6 584 52.2
Os11g0507400 Oryza sativa ssp. japonica HOM05D005105 ORTHO05D006244 2.6e-165 586.3 500 57.8
FvH4_6g53950 Fragaria vesca HOM05D005105 ORTHO05D006244 4.2e-163 578.9 374 73.3
Peaxi162Scf00331g00014 Petunia axillaris HOM05D005105 ORTHO05D006244 3.6e-159 565.8 510 56.5
Hma1.2p1_0093F.1_g046930 Hydrangea macrophylla HOM05D005105 ORTHO05D006244 2.6e-157 559.7 388 68.8
Dinv33309 Davidia involucrata HOM05D005105 ORTHO05D006244 7.1e-155 551.6 420 65.0
Gohir.A09G038300 Gossypium hirsutum HOM05D005105 ORTHO05D006244 4.6e-154 548.9 474 59.5
CARHR148130 Cardamine hirsuta HOM05D005105 ORTHO05D006244 2.3e-153 546.6 389 65.3
Cpa.g.sc70.110 Carica papaya HOM05D005105 ORTHO05D006244 1.9e-152 543.5 481 59.9
SHI04027 Sapria himalayana HOM05D005105 ORTHO05D006244 1.9e-152 543.5 560 52.5
Atru.chr6.2613 Acer truncatum HOM05D005105 ORTHO05D006244 4.3e-152 542.3 350 72.6
Eucgr.I01623 Eucalyptus grandis HOM05D005105 ORTHO05D006244 1.7e-148 530.4 347 71.8
unitig_0.g1913 Utricularia gibba HOM05D005105 ORTHO05D006244 1.7e-148 530.4 459 58.4
Lsat_1_v5_gn_5_10960 Lactuca sativa HOM05D005105 ORTHO05D006244 9.6e-144 514.6 571 50.8
MD17G1010700 Malus domestica HOM05D005105 ORTHO05D006244 2.8e-143 513.1 352 70.2
Prupe.3G297400 Prunus persica HOM05D005105 ORTHO05D006244 2.4e-134 483.4 517 51.3
COL.COLO4_13307 Corchorus olitorius HOM05D005105 ORTHO05D006244 1.2e-130 471.1 502 50.6
CSS0048130 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 7.4e-128 461.8 348 64.1
CSS0029044 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 1.8e-126 457.2 330 67.0
PGSC0003DMG400013660 Solanum tuberosum HOM05D005105 ORTHO05D006244 4.2e-123 446.0 302 69.5
ECA246G1012 Erigeron canadensis HOM05D005105 ORTHO05D006244 3.6e-122 443.0 430 53.3
Lj5A92G44 Lonicera japonica HOM05D005105 ORTHO05D006244 3.6e-122 443.0 326 66.6
Sopen02g026870 Solanum pennellii HOM05D005105 ORTHO05D006244 6.1e-122 442.2 302 68.9
SMO180G0002 Selaginella moellendorffii HOM05D005105 ORTHO05D006244 7.9e-122 441.8 469 47.5
Pp3c1_35010 Physcomitrium patens HOM05D005105 ORTHO05D006244 4.7e-114 416.0 512 43.2
HPP92_009891 Vanilla planifolia HOM05D005105 ORTHO05D006244 6.1e-114 415.6 322 64.3
Pp3c21_14570 Physcomitrium patens HOM05D005105 ORTHO05D006244 2.7e-109 400.2 503 42.1
Glyma.02G065000 Glycine max HOM05D005105 ORTHO05D006244 3.5e-109 399.8 398 55.0
PSO063G6475 Papaver somniferum HOM05D005105 ORTHO05D006244 2.8e-95 353.6 338 56.2
Dinv23187 Davidia involucrata HOM05D005105 ORTHO05D006244 4.5e-93 346.3 247 68.0
Actinidia18328 Actinidia chinensis HOM05D005105 ORTHO05D006244 5.9e-93 345.9 259 64.9
THA.LOC104813335 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 5.6e-91 339.3 277 59.6
TWI34G0688 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 2.9e-87 327.0 225 67.1
AagrBONN_evm.TU.Sc2ySwM_340.35 Anthoceros agrestis HOM05D005105 ORTHO05D006244 1.9e-75 287.7 513 32.2
HPP92_009881 Vanilla planifolia HOM05D005105 ORTHO05D006244 3.6e-74 283.5 233 57.9
Actinidia18329 Actinidia chinensis HOM05D005105 ORTHO05D006244 5.2e-65 253.1 280 49.6
CDE05G2066 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 2.1e-61 241.1 148 77.0
Gohir.D09G039750 Gossypium hirsutum HOM05D005105 ORTHO05D006244 1.6e-58 231.5 161 67.7
FAN05G0264 Fragaria x ananassa HOM05D005105 ORTHO05D006244 3.8e-55 220.3 180 60.0
Actinidia25549 Actinidia chinensis HOM05D005105 ORTHO05D006244 1.2e-53 215.3 138 71.0
HPP92_009897 Vanilla planifolia HOM05D005105 ORTHO05D006244 7.8e-53 212.6 182 54.9
Atru.chr6.2612 Acer truncatum HOM05D005105 ORTHO05D006244 6.4e-39 166.4 168 56.0
Actinidia05877 Actinidia chinensis HOM05D000139 ORTHO05D000103 1.9e-38 164.9 205 47.3
CBR_g57654 Chara braunii HOM05D000004 ORTHO05D000002 1.6e-34 151.8 163 45.4
Gohir.D09G039801 Gossypium hirsutum HOM05D005105 ORTHO05D006244 3.7e-34 150.6 176 50.0
SGA_v2.0_scaffold253G45172 Striga asiatica HOM05D005105 ORTHO05D006244 2.4e-33 147.9 96 70.8
Lj5A92G45 Lonicera japonica HOM05D005105 ORTHO05D006244 1.2e-32 145.6 146 50.7
Dinv23186 Davidia involucrata HOM05D005105 ORTHO05D006244 4.5e-32 143.7 114 65.8
Ah.03g148260 Amaranthus hybridus HOM05D005105 ORTHO05D006244 1.4e-30 138.7 93 69.9
Glyma.19G097001 Glycine max HOM05D005105 ORTHO05D006244 2.5e-30 137.9 93 71.0
Actinidia25550 Actinidia chinensis HOM05D005105 ORTHO05D006244 2.7e-29 134.4 174 40.8
Glyma.19G097101 Glycine max HOM05D005105 ORTHO05D006244 1.1e-25 122.5 86 68.6
Dinv33310 Davidia involucrata HOM05D005105 ORTHO05D006244 1.9e-19 101.7 133 50.4
HPP92_009880 Vanilla planifolia HOM05D005105 ORTHO05D006244 5.7e-11 73.6 71 49.3
SEGI_15377 Sequoiadendron giganteum HOM05D005105 ORTHO05D006244 9.7e-11 72.8 76 48.7


User provided reference genes

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