Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C025044.2 Cucumis melo HOM05D004543 ORTHO05D006042 0.0e+00 1425.2 755 100.0
CsaV3_6G002430 Cucumis sativus L. HOM05D004543 ORTHO05D006042 0.0e+00 1390.9 755 96.2
ClCG11G005570 Citrullus lanatus HOM05D004543 ORTHO05D006042 0.0e+00 1343.6 757 93.1
Sed0023388 Sechium edule HOM05D004543 ORTHO05D006042 0.0e+00 1284.6 755 90.2
Sed0026192 Sechium edule HOM05D004543 ORTHO05D006042 0.0e+00 1261.1 755 88.2
CiPaw.11G008900 Carya illinoinensis HOM05D004543 ORTHO05D006042 0.0e+00 1104.4 758 75.3
Cfa018837 Carpinus fangiana HOM05D004543 ORTHO05D006042 0.0e+00 1100.1 758 75.7
Haze_07231 Corylus avellana HOM05D004543 ORTHO05D006042 0.0e+00 1099.0 758 75.6
Manes.06G118300 Manihot esculenta HOM05D004543 ORTHO05D006042 0.0e+00 1094.7 750 75.2
Ciclev10018979m.g Citrus clementina HOM05D004543 ORTHO05D006042 0.0e+00 1083.2 758 73.6
QL10p004063 Quercus lobata HOM05D004543 ORTHO05D006042 7.7e-311 1070.1 774 72.1
Dinv11159 Davidia involucrata HOM05D004543 ORTHO05D006042 3.0e-310 1068.1 758 73.4
CSS0037462 Camellia sinensis var. sinensis HOM05D004543 ORTHO05D006042 8.7e-310 1066.6 757 72.8
MD06G1143400 Malus domestica HOM05D004543 ORTHO05D006042 5.6e-309 1063.9 756 72.6
Actinidia25587 Actinidia chinensis HOM05D004543 ORTHO05D006042 1.6e-308 1062.4 756 72.2
Ca_00911_v3 Cicer arietinum L. HOM05D004543 ORTHO05D006042 5.3e-307 1057.4 758 72.3
Glyma.17G129100 Glycine max HOM05D004543 ORTHO05D006042 1.2e-306 1056.2 756 72.0
VMungo1215G3183 Vigna mungo HOM05D004543 ORTHO05D006042 2.0e-306 1055.4 756 72.1
Eucgr.B00121 Eucalyptus grandis HOM05D004543 ORTHO05D006042 4.5e-306 1054.3 749 74.4
RcHm_v2.0_Chr7g0190411 Rosa chinensis HOM05D004543 ORTHO05D006042 4.5e-306 1054.3 757 72.1
Phvul.003G210200 Phaseolus vulgaris HOM05D004543 ORTHO05D006042 5.8e-306 1053.9 758 71.8
Atru.chr9.1076 Acer truncatum HOM05D004543 ORTHO05D006042 1.7e-305 1052.4 758 71.4
MD14G1158600 Malus domestica HOM05D004543 ORTHO05D006042 8.4e-305 1050.0 756 71.8
Thecc.06G039500 Theobroma cacao HOM05D004543 ORTHO05D006042 8.4e-305 1050.0 752 72.6
Lalb_Chr07g0183361 Lupinus albus HOM05D004543 ORTHO05D006042 1.4e-304 1049.3 756 71.4
COL.COLO4_26675 Corchorus olitorius HOM05D004543 ORTHO05D006042 2.7e-303 1045.0 759 71.3
CANSAT80G2145 Cannabis sativa HOM05D004543 ORTHO05D006042 6.0e-303 1043.9 756 70.8
arahy.Tifrunner.gnm1.ann1.9QW7J0 Arachis hypogaea HOM05D004543 ORTHO05D006042 3.9e-302 1041.2 753 70.9
Prupe.5G152600 Prunus persica HOM05D004543 ORTHO05D006042 3.9e-302 1041.2 756 71.3
vmacro19212 Vaccinium macrocarpon HOM05D004543 ORTHO05D006042 3.9e-302 1041.2 760 70.4
arahy.Tifrunner.gnm1.ann1.28ZGNX Arachis hypogaea HOM05D004543 ORTHO05D006042 1.1e-301 1039.6 753 70.9
Duzib138G1537 Durio zibethinus HOM05D004543 ORTHO05D006042 4.3e-301 1037.7 759 71.8
Lj4g0012876 Lotus japonicus HOM05D004543 ORTHO05D006042 4.3e-301 1037.7 756 71.2
Glyma.05G047300 Glycine max HOM05D004543 ORTHO05D006042 2.1e-300 1035.4 756 70.4
TWI23G0493 Tripterygium wilfordii HOM05D004543 ORTHO05D006042 2.1e-300 1035.4 751 70.7
Gorai.007G187600 Gossypium raimondii HOM05D004543 ORTHO05D006042 4.8e-300 1034.2 758 71.0
Actinidia15838 Actinidia chinensis HOM05D004543 ORTHO05D006042 8.2e-300 1033.5 772 69.7
Gohir.D11G175000 Gossypium hirsutum HOM05D004543 ORTHO05D006042 1.8e-299 1032.3 758 71.0
FvH4_5g08050 Fragaria vesca HOM05D004543 ORTHO05D006042 3.1e-299 1031.6 774 70.3
FAN13G0766 Fragaria x ananassa HOM05D004543 ORTHO05D006042 9.0e-299 1030.0 746 71.8
FAN18G3295 Fragaria x ananassa HOM05D004543 ORTHO05D006042 2.0e-298 1028.9 774 70.2
Lj9C477T19 Lonicera japonica HOM05D004543 ORTHO05D006042 7.6e-298 1026.9 801 68.2
Gohir.A11G168800 Gossypium hirsutum HOM05D004543 ORTHO05D006042 1.7e-297 1025.8 758 70.8
PGR083G0162 Punica granatum HOM05D004543 ORTHO05D006042 2.2e-297 1025.4 763 69.2
GSVIVG01008523001 Vitis vinifera HOM05D004543 ORTHO05D006042 2.2e-297 1025.4 754 70.4
FAN04G2916 Fragaria x ananassa HOM05D004543 ORTHO05D006042 3.8e-297 1024.6 762 70.5
Potri.012G096100 Populus trichocarpa HOM05D004543 ORTHO05D006042 1.1e-293 1013.1 753 69.9
Potri.015G094000 Populus trichocarpa HOM05D004543 ORTHO05D006042 1.1e-293 1013.1 748 69.9
Medtr4g103610 Medicago truncatula HOM05D004543 ORTHO05D006042 1.5e-293 1012.7 758 68.9
Sabra15G0115500 Salix brachista HOM05D004543 ORTHO05D006042 1.5e-293 1012.7 752 69.5
Hund02429 Selenicereus undatus HOM05D004543 ORTHO05D006042 4.8e-292 1007.7 757 69.1
PSO782G5417 Papaver somniferum HOM05D004543 ORTHO05D006042 9.0e-291 1003.4 758 68.2
PSO063G5574 Papaver somniferum HOM05D004543 ORTHO05D006042 1.2e-290 1003.0 758 68.2
Migut.I00508 Erythranthe guttata HOM05D004543 ORTHO05D006042 1.5e-290 1002.7 754 69.9
Nn3g16500 Nelumbo nucifera HOM05D004543 ORTHO05D006042 7.7e-290 1000.3 752 68.2
Cc07_g18860 Coffea canephora HOM05D004543 ORTHO05D006042 7.2e-288 993.8 747 69.1
Hma1.2p1_1271F.1_g271760 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 1.6e-287 992.6 709 72.1
Cpa.g.sc13.138 Carica papaya HOM05D004543 ORTHO05D006042 1.4e-286 989.6 749 69.3
Aqoxy5G03415 Aquilegia oxysepala HOM05D004543 ORTHO05D006042 1.8e-286 989.2 745 67.7
THA.LOC104811593 Tarenaya hassleriana HOM05D004543 ORTHO05D006042 3.9e-286 988.0 760 67.0
AL7G28340 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 2.0e-285 985.7 759 67.3
Lsat_1_v5_gn_4_76761 Lactuca sativa HOM05D004543 ORTHO05D006042 9.7e-285 983.4 752 66.9
Oeu056011.1 Olea europaea HOM05D004543 ORTHO05D006042 1.1e-283 979.9 760 66.8
Carub.0007s1621 Capsella rubella HOM05D004543 ORTHO05D006042 4.1e-283 978.0 744 67.2
HanXRQChr09g0273071 Helianthus annuus HOM05D004543 ORTHO05D006042 5.0e-281 971.1 757 66.7
AT4G24840 Arabidopsis thaliana HOM05D004543 ORTHO05D006042 1.1e-280 969.9 759 66.1
AUR62029871 Chenopodium quinoa HOM05D004543 ORTHO05D006042 7.9e-279 963.8 751 66.3
Aa31LG7G11000 Aethionema arabicum HOM05D004543 ORTHO05D006042 3.3e-277 958.4 782 64.2
PGSC0003DMG400026304 Solanum tuberosum HOM05D004543 ORTHO05D006042 3.1e-275 951.8 750 66.3
EL10As4g23416 Beta vulgaris HOM05D004543 ORTHO05D006042 5.3e-275 951.0 752 66.9
SGA_v2.0_scaffold161G37784 Striga asiatica HOM05D004543 ORTHO05D006042 5.3e-275 951.0 756 66.7
Sopen08g002610 Solanum pennellii HOM05D004543 ORTHO05D006042 9.1e-275 950.3 753 66.0
Nitab4.5_0001187g0130 Nicotiana tabacum HOM05D004543 ORTHO05D006042 6.5e-273 944.1 764 66.0
Thhalv10024490m.g Eutrema salsugineum HOM05D004543 ORTHO05D006042 8.5e-273 943.7 760 64.1
Nitab4.5_0002497g0060 Nicotiana tabacum HOM05D004543 ORTHO05D006042 8.5e-273 943.7 764 66.2
Carub.0003s0428 Capsella rubella HOM05D004543 ORTHO05D006042 2.5e-272 942.2 744 64.4
C01p20140 Brassica napus HOM05D004543 ORTHO05D006042 5.5e-272 941.0 763 63.7
BolC1t01943H Brassica oleracea HOM05D004543 ORTHO05D006042 5.5e-272 941.0 763 63.7
Sp7g22830 Schrenkiella parvula HOM05D004543 ORTHO05D006042 9.4e-272 940.3 766 63.6
BcaC06g32853 Brassica carinata HOM05D004543 ORTHO05D006042 1.2e-271 939.9 764 63.5
BolC7t45874H Brassica oleracea HOM05D004543 ORTHO05D006042 1.2e-271 939.9 764 63.5
C07p53840 Brassica napus HOM05D004543 ORTHO05D006042 3.0e-270 935.3 764 63.2
Migut.I00509 Erythranthe guttata HOM05D004543 ORTHO05D006042 3.0e-270 935.3 745 66.7
A03p55600 Brassica napus HOM05D004543 ORTHO05D006042 6.7e-270 934.1 764 63.4
BraA03t14627Z Brassica rapa HOM05D004543 ORTHO05D006042 6.7e-270 934.1 764 63.4
ECA232G1394 Erigeron canadensis HOM05D004543 ORTHO05D006042 6.7e-270 934.1 744 64.2
A01p16150 Brassica napus HOM05D004543 ORTHO05D006042 1.1e-269 933.3 761 63.1
BraA01t01551Z Brassica rapa HOM05D004543 ORTHO05D006042 1.1e-269 933.3 761 63.1
unitig_8.g3033 Utricularia gibba HOM05D004543 ORTHO05D006042 1.3e-268 929.9 751 64.2
AL3G15410 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 2.9e-265 918.7 744 63.6
TAR622G0482 Trochodendron aralioides HOM05D004543 ORTHO05D006042 1.1e-264 916.8 686 70.0
Peaxi162Scf00045g00192 Petunia axillaris HOM05D004543 ORTHO05D006042 1.0e-262 910.2 756 64.3
FAN08G2446 Fragaria x ananassa HOM05D004543 ORTHO05D006042 9.1e-259 897.1 774 63.6
Psat0s3466g0040 Pisum sativum HOM05D004543 ORTHO05D006042 1.3e-257 893.3 634 72.1
CAN.G906.5 Capsicum annuum HOM05D004543 ORTHO05D006042 1.9e-256 889.4 768 62.5
Sp6g25960 Schrenkiella parvula HOM05D004543 ORTHO05D006042 6.8e-254 880.9 756 60.3
ATR0561G088 Amborella trichopoda HOM05D004543 ORTHO05D006042 2.0e-250 869.4 734 62.3
BcaNung06004 Brassica carinata HOM05D004543 ORTHO05D006042 8.6e-249 864.0 712 63.3
CDE05G1945 Ceratophyllum demersum HOM05D004543 ORTHO05D006042 5.6e-248 861.3 755 60.3
AUR62025843 Chenopodium quinoa HOM05D004543 ORTHO05D006042 1.5e-240 836.6 642 67.1
SHI28598 Sapria himalayana HOM05D004543 ORTHO05D006042 3.6e-239 832.0 821 56.5
SEGI_19802 Sequoiadendron giganteum HOM05D004543 ORTHO05D006042 8.9e-238 827.4 748 58.6
Os03g0849600 Oryza sativa ssp. japonica HOM05D004543 ORTHO05D006042 1.1e-235 820.5 763 56.9
Zm00001eb210790 Zea mays HOM05D004543 ORTHO05D006042 2.5e-232 809.3 763 56.5
A03p08790 Brassica napus HOM05D004543 ORTHO05D006042 1.6e-231 806.6 749 57.0
BolC3t13508H Brassica oleracea HOM05D004543 ORTHO05D006042 6.8e-230 801.2 748 57.2
C03p10280 Brassica napus HOM05D004543 ORTHO05D006042 1.3e-228 797.0 750 57.5
BraA03t10204Z Brassica rapa HOM05D004543 ORTHO05D006042 1.3e-228 797.0 750 57.5
TPR.G19235 Trifolium pratense HOM05D004543 ORTHO05D006042 2.4e-227 792.7 651 65.7
BcaB01g05188 Brassica carinata HOM05D004543 ORTHO05D006042 2.8e-223 779.2 727 57.1
Dinv04875 Davidia involucrata HOM05D004543 ORTHO05D006042 4.4e-221 771.9 528 75.0
Mapoly0003s0046 Marchantia polymorpha HOM05D004543 ORTHO05D006042 5.1e-217 758.4 760 53.6
Sc04g0000730 Simmondsia chinensis HOM05D004543 ORTHO05D006042 3.6e-215 752.3 536 72.6
Rhsim08G0188800 Rhododendron simsii HOM05D004543 ORTHO05D006042 6.9e-214 748.0 528 72.2
HPP92_007000 Vanilla planifolia HOM05D004543 ORTHO05D006042 1.8e-201 706.8 759 52.7
BcaNung04937 Brassica carinata HOM05D004543 ORTHO05D006042 3.9e-201 705.7 721 54.1
AagrBONN_evm.TU.Sc2ySwM_344.2190 Anthoceros agrestis HOM05D004543 ORTHO05D006042 1.4e-198 697.2 744 49.5
CARHR232260 Cardamine hirsuta HOM05D004543 ORTHO05D006042 8.4e-196 688.0 533 64.5
Pp3c17_20170 Physcomitrium patens HOM05D004543 ORTHO05D006042 7.1e-195 684.9 746 50.3
Pp3c14_17740 Physcomitrium patens HOM05D004543 ORTHO05D006042 4.6e-194 682.2 762 48.8
Solyc08g006660.2 Solanum lycopersicum HOM05D004543 ORTHO05D006042 1.5e-189 667.2 548 64.6
SMO347G0349 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 7.4e-176 621.7 747 45.6
DCAR_026221 Daucus carota HOM05D004543 ORTHO05D006042 4.7e-162 575.9 763 46.3
Sabra12G0070400 Salix brachista HOM05D004543 ORTHO05D006042 4.8e-151 539.3 382 73.6
CBR_g49627 Chara braunii HOM05D004543 ORTHO05D006042 2.6e-144 516.9 608 47.4
Zm00001eb064480 Zea mays HOM05D004543 ORTHO05D006042 1.2e-125 454.9 390 60.5
Manes.14G052401 Manihot esculenta HOM05D004543 ORTHO05D006042 5.0e-124 449.5 345 66.4
PRCOL_00002621 Prasinoderma coloniale HOM05D004543 ORTHO05D006042 1.9e-110 404.4 745 36.1
Medtr3g105000 Medicago truncatula HOM05D004543 ORTHO05D006042 1.7e-108 397.9 476 50.6
MCO07G105 Micromonas commoda HOM05D004543 ORTHO05D006042 2.1e-85 321.2 750 29.1
Hma1.2p1_0140F.1_g063450 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 2.1e-82 311.2 227 70.9
Cre09.g402750 Chlamydomonas reinhardtii HOM05D004543 ORTHO05D006042 3.9e-76 290.4 834 28.5
Sc04g0000720 Simmondsia chinensis HOM05D004543 ORTHO05D006042 5.8e-72 276.6 224 67.0
HPP92_006979 Vanilla planifolia HOM05D004543 ORTHO05D006042 1.4e-70 271.9 515 39.4
Hma1.2p1_0140F.1_g063430 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 2.9e-55 221.1 222 56.8
Medtr3g105005 Medicago truncatula HOM05D004543 ORTHO05D006042 8.5e-47 193.0 202 55.9
Lsat_1_v5_gn_5_92440 Lactuca sativa HOM05D004543 ORTHO05D006042 3.2e-38 164.5 151 57.6
TPR.G18590 Trifolium pratense HOM05D001327 ORTHO05D002270 2.1e-37 161.8 123 65.0
Medtr7g104380 Medicago truncatula HOM05D004543 ORTHO05D006042 1.5e-35 155.6 136 61.0
TPR.G34490 Trifolium pratense HOM05D004543 ORTHO05D006042 2.5e-30 138.3 102 68.6
Manes.14G052501 Manihot esculenta HOM05D004543 ORTHO05D006042 4.2e-30 137.5 239 41.4
SEGI_01008 Sequoiadendron giganteum HOM05D004543 ORTHO05D037602 6.8e-28 130.2 112 59.8
Rhsim02G0055400 Rhododendron simsii HOM05D004543 ORTHO05D006042 1.5e-27 129.0 87 71.3
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 9.8e-27 126.3 79 74.7
Rhsim04G0209800 Rhododendron simsii HOM05D004543 ORTHO05D006042 3.7e-26 124.4 79 74.7
PSO675G5444 Papaver somniferum HOM05D004543 ORTHO05D010954 4.8e-26 124.0 229 39.3
vmacro20276 Vaccinium macrocarpon HOM05D004543 ORTHO05D037602 9.5e-22 109.8 218 38.1
TPR.G22932 Trifolium pratense HOM05D004543 ORTHO05D037602 3.7e-18 97.8 91 57.1
Hma1.2p1_0140F.1_g063440 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 5.9e-16 90.5 75 61.3
SMO301G0055 Selaginella moellendorffii HOM05D004543 ORTHO05D000231 7.3e-14 83.6 116 37.9
Medtr1g076750 Medicago truncatula HOM05D004543 ORTHO05D006042 1.4e-12 79.3 81 53.1
Lsat_1_v5_gn_3_118241 Lactuca sativa HOM05D004543 ORTHO05D001664 2.3e-12 78.6 115 40.0
SMO117G0159 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 4.4e-11 74.3 98 39.8
Medtr6g087290 Medicago truncatula HOM05D004543 ORTHO05D006042 7.5e-11 73.6 101 42.6
Medtr0004s0190 Medicago truncatula HOM05D004543 ORTHO05D260927 4.9e-10 70.9 67 55.2
FAN06G0151 Fragaria x ananassa HOM05D004543 ORTHO05D022695 1.4e-09 69.3 65 53.8
FAN06G1316 Fragaria x ananassa HOM05D004543 ORTHO05D022695 1.4e-09 69.3 65 53.8
FvH4_7g19080 Fragaria vesca HOM05D000254 ORTHO05D022695 9.2e-09 66.6 65 52.3
FAN08G3116 Fragaria x ananassa HOM05D003545 ORTHO05D004720 1.2e-08 66.2 63 54.0
SMO250G0003 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 3.9e-07 61.2 44 61.4
TPR.G19226 Trifolium pratense HOM05D004543 ORTHO05D006042 1.5e-06 59.3 39 76.9
Medtr5g009630 Medicago truncatula HOM05D004543 ORTHO05D004261 4.3e-06 57.8 55 52.7


User provided reference genes

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