Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C025024.2 Cucumis melo HOM05D006715 ORTHO05D008345 0.0e+00 1338.9 653 100.0
ClCG08G002210 Citrullus lanatus HOM05D006715 ORTHO05D008345 3.9e-306 1054.3 658 81.3
CsaV3_6G002600 Cucumis sativus L. HOM05D006715 ORTHO05D008345 7.8e-283 976.9 535 91.6
Sed0009104 Sechium edule HOM05D006715 ORTHO05D008345 1.4e-223 780.0 664 64.5
Cfa018312 Carpinus fangiana HOM05D006715 ORTHO05D008345 2.4e-159 566.6 673 48.4
QL09p013340 Quercus lobata HOM05D006715 ORTHO05D008345 4.5e-145 519.2 663 46.5
Thecc.08G154500 Theobroma cacao HOM05D006715 ORTHO05D008345 3.8e-144 516.2 663 46.3
Manes.02G180601 Manihot esculenta HOM05D006715 ORTHO05D008345 4.2e-143 512.7 683 46.3
arahy.Tifrunner.gnm1.ann1.6MC3QX Arachis hypogaea HOM05D006715 ORTHO05D008345 1.8e-141 507.3 693 45.6
RcHm_v2.0_Chr6g0275051 Rosa chinensis HOM05D006715 ORTHO05D008345 1.9e-140 503.8 681 44.6
arahy.Tifrunner.gnm1.ann1.SG7PGU Arachis hypogaea HOM05D006715 ORTHO05D008345 9.7e-140 501.5 713 44.5
MD05G1027900 Malus domestica HOM05D006715 ORTHO05D008345 1.6e-139 500.7 693 44.6
CANSAT25G3857 Cannabis sativa HOM05D006715 ORTHO05D008345 2.2e-139 500.4 700 46.0
Medtr2g045070 Medicago truncatula HOM05D006715 ORTHO05D008345 2.4e-138 496.9 667 47.1
FvH4_2g13430 Fragaria vesca HOM05D006715 ORTHO05D008345 1.5e-137 494.2 680 44.3
FAN24G1213 Fragaria x ananassa HOM05D006715 ORTHO05D008345 5.9e-137 492.3 680 44.3
Lj2g0009741 Lotus japonicus HOM05D006715 ORTHO05D008345 1.7e-136 490.7 671 46.8
Ciclev10000601m.g Citrus clementina HOM05D006715 ORTHO05D008345 3.8e-136 489.6 667 45.3
CiPaw.16G011000 Carya illinoinensis HOM05D006715 ORTHO05D008345 6.5e-136 488.8 601 47.6
Duzib093G1010 Durio zibethinus HOM05D006715 ORTHO05D008345 2.1e-134 483.8 667 43.6
Gorai.010G134600 Gossypium raimondii HOM05D006715 ORTHO05D008345 2.3e-133 480.3 656 45.0
Psat1g102000 Pisum sativum HOM05D006715 ORTHO05D008345 3.0e-133 479.9 668 44.6
Prupe.8G033600 Prunus persica HOM05D006715 ORTHO05D008345 3.0e-133 479.9 687 44.4
TWI34G0194 Tripterygium wilfordii HOM05D006715 ORTHO05D008345 5.7e-132 475.7 722 42.2
Potri.005G193500 Populus trichocarpa HOM05D006715 ORTHO05D008345 9.7e-132 474.9 674 45.0
Actinidia17784 Actinidia chinensis HOM05D006715 ORTHO05D008345 1.7e-131 474.2 676 45.4
Gohir.A06G112504 Gossypium hirsutum HOM05D006715 ORTHO05D008345 1.7e-131 474.2 665 44.1
Lj7A376T34 Lonicera japonica HOM05D006715 ORTHO05D008345 9.4e-127 458.4 681 43.8
Phvul.004G094200 Phaseolus vulgaris HOM05D006715 ORTHO05D008345 2.7e-126 456.8 660 45.5
Cpa.g.sc1027.1 Carica papaya HOM05D006715 ORTHO05D008345 7.9e-126 455.3 660 43.9
VMungo0464G1764 Vigna mungo HOM05D006715 ORTHO05D008345 1.4e-125 454.5 675 44.7
TAR381G1273 Trochodendron aralioides HOM05D006715 ORTHO05D008345 3.9e-125 453.0 704 40.8
Atru.chr13.2084 Acer truncatum HOM05D006715 ORTHO05D008345 2.0e-124 450.7 657 44.4
THA.LOC104804670 Tarenaya hassleriana HOM05D006715 ORTHO05D008345 6.5e-120 435.6 665 41.8
RcHm_v2.0_Chr5g0050861 Rosa chinensis HOM05D006715 ORTHO05D008345 2.5e-119 433.7 561 44.6
PGR042G1662 Punica granatum HOM05D006715 ORTHO05D008345 4.2e-119 433.0 677 43.3
SGA_v2.0_scaffold25G11186 Striga asiatica HOM05D006715 ORTHO05D008345 8.0e-118 428.7 690 40.6
Aqoxy5G00857 Aquilegia oxysepala HOM05D006715 ORTHO05D008345 8.8e-117 425.2 675 41.2
Eucgr.F02698 Eucalyptus grandis HOM05D006715 ORTHO05D008345 4.1e-114 416.4 673 41.3
Nitab4.5_0001187g0100 Nicotiana tabacum HOM05D006715 ORTHO05D008345 4.1e-114 416.4 689 40.6
FAN27G2814 Fragaria x ananassa HOM05D006715 ORTHO05D008345 7.0e-114 415.6 574 45.6
Sopen04g027550 Solanum pennellii HOM05D006715 ORTHO05D008345 4.5e-113 412.9 679 38.1
Sp1g32410 Schrenkiella parvula HOM05D006715 ORTHO05D008345 7.7e-113 412.1 651 41.3
Nn5g28769 Nelumbo nucifera HOM05D006715 ORTHO05D008345 8.5e-112 408.7 728 39.8
CAN.G1215.10 Capsicum annuum HOM05D006715 ORTHO05D008345 5.5e-111 406.0 681 39.5
Hund26691 Selenicereus undatus HOM05D006715 ORTHO05D008345 4.7e-110 402.9 693 39.5
COL.COLO4_29857 Corchorus olitorius HOM05D006715 ORTHO05D008345 6.1e-110 402.5 513 46.0
Lsat_1_v5_gn_9_41180 Lactuca sativa HOM05D006715 ORTHO05D008345 4.0e-109 399.8 660 41.1
TPR.G23114 Trifolium pratense HOM05D006715 ORTHO05D008345 4.0e-109 399.8 491 44.8
Migut.N03207 Erythranthe guttata HOM05D006715 ORTHO05D008345 2.6e-108 397.1 687 39.4
Glyma.16G166500 Glycine max HOM05D006715 ORTHO05D008345 7.5e-108 395.6 664 40.7
Rhsim05G0181200 Rhododendron simsii HOM05D006715 ORTHO05D008345 1.7e-107 394.4 551 44.1
Thhalv10003905m.g Eutrema salsugineum HOM05D006715 ORTHO05D008345 8.3e-107 392.1 653 40.4
AL1G51600 Arabidopsis lyrata HOM05D006715 ORTHO05D008345 1.1e-106 391.7 650 39.8
Peaxi162Scf00599g00121 Petunia axillaris HOM05D006715 ORTHO05D008345 2.4e-106 390.6 660 39.8
AT1G43245 Arabidopsis thaliana HOM05D006715 ORTHO05D008345 3.1e-106 390.2 651 38.9
ECA232G1953 Erigeron canadensis HOM05D006715 ORTHO05D008345 3.1e-106 390.2 654 40.2
MSTRG.24217 Avicennia marina HOM05D006715 ORTHO05D008345 4.1e-106 389.8 737 37.7
GSVIVG01034549001 Vitis vinifera HOM05D006715 ORTHO05D008345 5.3e-106 389.4 524 44.7
vmacro20039 Vaccinium macrocarpon HOM05D006715 ORTHO05D008345 1.2e-102 378.3 662 38.8
BcaB01g02294 Brassica carinata HOM05D006715 ORTHO05D008345 5.2e-101 372.9 654 40.1
Haze_17767 Corylus avellana HOM05D006715 ORTHO05D008345 2.6e-100 370.5 404 50.7
BcaC04g24108 Brassica carinata HOM05D006715 ORTHO05D008345 5.7e-100 369.4 648 38.9
Aa31LG6G9940 Aethionema arabicum HOM05D006715 ORTHO05D008345 1.3e-99 368.2 695 38.0
PSO675G4790 Papaver somniferum HOM05D006715 ORTHO05D008345 4.1e-98 363.2 700 37.6
Gohir.D06G116900 Gossypium hirsutum HOM05D006715 ORTHO05D008345 5.9e-97 359.4 482 46.1
SalBow6G6609 Salvia bowleyana HOM05D006715 ORTHO05D008345 1.3e-91 341.7 674 37.5
HanXRQChr11g0320291 Helianthus annuus HOM05D006715 ORTHO05D008345 1.1e-90 338.6 668 37.9
DCAR_010095 Daucus carota HOM05D006715 ORTHO05D008345 3.2e-90 337.0 481 42.6
CDE12G0089 Ceratophyllum demersum HOM05D006715 ORTHO05D008345 2.7e-89 334.0 670 36.0
EL10Ac1g01568 Beta vulgaris HOM05D006715 ORTHO05D008345 2.3e-88 330.9 662 37.0
unitig_21.g20147 Utricularia gibba HOM05D006715 ORTHO05D008345 4.3e-87 326.6 680 35.7
ATR0820G173 Amborella trichopoda HOM05D006715 ORTHO05D008345 5.6e-87 326.2 698 35.5
Ca_26954_v3 Cicer arietinum L. HOM05D006715 ORTHO05D008345 7.3e-87 325.9 512 43.8
BolC9t53031H Brassica oleracea HOM05D006715 ORTHO05D008345 1.6e-86 324.7 608 37.0
C09p00980 Brassica napus HOM05D006715 ORTHO05D008345 1.2e-84 318.5 601 36.8
A09p00880 Brassica napus HOM05D006715 ORTHO05D008345 3.7e-83 313.5 554 38.6
BraA09t35760Z Brassica rapa HOM05D006715 ORTHO05D008345 8.3e-83 312.4 598 36.8
Dinv41067 Davidia involucrata HOM05D006715 ORTHO05D008345 1.0e-80 305.4 352 48.6
Zm00001eb083170 Zea mays HOM05D006715 ORTHO05D008345 2.3e-77 294.3 680 33.7
Os04g0423600 Oryza sativa ssp. japonica HOM05D006715 ORTHO05D008345 2.0e-76 291.2 678 32.7
SHI09071 Sapria himalayana HOM05D006715 ORTHO05D008345 4.9e-75 286.6 754 33.2
CARHR035370 Cardamine hirsuta HOM05D006715 ORTHO05D008345 4.7e-70 270.0 417 42.4
PGSC0003DMG400024094 Solanum tuberosum HOM05D006715 ORTHO05D008345 5.2e-69 266.5 394 38.1
Lalb_Chr01g0009561 Lupinus albus HOM05D006715 ORTHO05D008345 1.9e-66 258.1 311 46.9
AUR62026687 Chenopodium quinoa HOM05D006715 ORTHO05D008345 9.2e-66 255.8 320 44.4
Nitab4.5_0002764g0020 Nicotiana tabacum HOM05D006715 ORTHO05D008345 3.4e-60 237.3 373 37.0
Cc10_g14930 Coffea canephora HOM05D006715 ORTHO05D008345 5.8e-60 236.5 341 45.2
Lj2g0026984 Lotus japonicus HOM05D006715 ORTHO05D008345 1.1e-58 232.3 219 57.1
Lalb_Chr01g0009551 Lupinus albus HOM05D006715 ORTHO05D008345 2.5e-55 221.1 329 46.2
AUR62040600 Chenopodium quinoa HOM05D006715 ORTHO05D008345 1.3e-54 218.8 292 42.5
MBI17_g41095_MAGBIO Magnolia biondii HOM05D006715 ORTHO05D008345 2.6e-52 211.1 358 40.5
CSS0020422 Camellia sinensis var. sinensis HOM05D006715 ORTHO05D008345 2.1e-49 201.4 261 46.7
Potri.005G193701 Populus trichocarpa HOM05D006715 ORTHO05D008345 1.7e-48 198.4 329 38.9
Carub.0001s3453 Capsella rubella HOM05D006715 ORTHO05D008345 2.1e-46 191.4 363 35.3
Sc02g0003950 Simmondsia chinensis HOM05D006715 ORTHO05D008345 1.1e-45 189.1 218 45.9
HPP92_009296 Vanilla planifolia HOM05D006715 ORTHO05D008345 6.9e-45 186.4 344 36.9
TAR381G1110 Trochodendron aralioides HOM05D006715 ORTHO05D008345 4.5e-44 183.7 298 39.3
Glyma.16G166267 Glycine max HOM05D006715 ORTHO05D008345 5.8e-44 183.3 219 50.7
Carub.0001s3454 Capsella rubella HOM05D006715 ORTHO05D008345 2.1e-41 174.9 254 43.7
Glyma.16G166333 Glycine max HOM05D006715 ORTHO05D008345 1.8e-40 171.8 260 40.4
SEGI_11470 Sequoiadendron giganteum HOM05D006715 ORTHO05D008345 3.0e-40 171.0 370 35.9
Oeu031098.1 Olea europaea HOM05D006715 ORTHO05D008345 4.8e-38 163.7 378 35.2
CSS0028068 Camellia sinensis var. sinensis HOM05D006715 ORTHO05D008345 1.1e-31 142.5 260 40.4
SEGI_34185 Sequoiadendron giganteum HOM05D006715 ORTHO05D008345 5.8e-28 130.2 436 27.1
HPP92_009297 Vanilla planifolia HOM05D006715 ORTHO05D008345 3.2e-26 124.4 290 30.3
CSS0046539 Camellia sinensis var. sinensis HOM05D006715 ORTHO05D008345 1.6e-22 112.1 130 48.5
Gohir.1Z049355 Gossypium hirsutum HOM05D006715 ORTHO05D008345 1.8e-21 108.6 138 44.9
Medtr3g062560 Medicago truncatula HOM05D006715 ORTHO05D008345 5.3e-21 107.1 171 46.2
SEGI_20433 Sequoiadendron giganteum HOM05D006715 ORTHO05D008345 4.2e-18 97.4 246 35.8
arahy.Tifrunner.gnm1.ann1.12T13Y Arachis hypogaea HOM05D006715 ORTHO05D008345 3.2e-10 71.2 48 64.6
QL02p038810 Quercus lobata HOM05D006715 ORTHO05D008345 5.5e-10 70.5 168 33.9
CSS0020713 Camellia sinensis var. sinensis HOM05D006715 ORTHO05D008345 3.9e-08 64.3 127 35.4
PRCOL_00006858 Prasinoderma coloniale HOM05D004492 ORTHO05D005602 9.7e-07 59.7 134 26.1
Sc02g0003960 Simmondsia chinensis HOM05D006715 ORTHO05D008345 9.7e-07 59.7 90 44.4
MCO09G489 Micromonas commoda HOM05D006715 ORTHO05D008345 1.3e-06 59.3 323 23.5
Thecc.08G119400 Theobroma cacao HOM05D004492 ORTHO05D005602 2.2e-06 58.5 154 28.6
Sc02g0003940 Simmondsia chinensis HOM05D006715 ORTHO05D008345 3.7e-06 57.8 50 56.0
CSS0011701 Camellia sinensis var. sinensis HOM05D006715 ORTHO05D008345 8.2e-06 56.6 33 72.7


User provided reference genes

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