Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024997.2 Cucumis melo HOM05D003913 ORTHO05D004803 4.2e-122 442.2 393 100.0
CsaV3_6G002750 Cucumis sativus L. HOM05D003913 ORTHO05D004803 1.8e-120 436.8 393 98.7
ClCG08G002560 Citrullus lanatus HOM05D003913 ORTHO05D004803 4.1e-117 425.6 393 97.7
Sed0012824 Sechium edule HOM05D003913 ORTHO05D004803 3.4e-108 396.0 393 86.0
Sed0004416 Sechium edule HOM05D003913 ORTHO05D004803 3.0e-104 382.9 393 92.4
Dinv13071 Davidia involucrata HOM05D003913 ORTHO05D004803 1.2e-89 334.3 391 62.7
Dinv44716 Davidia involucrata HOM05D003913 ORTHO05D004803 3.3e-87 326.2 391 64.2
PGR031G2719 Punica granatum HOM05D003913 ORTHO05D004803 1.7e-86 323.9 390 84.4
Manes.02G188000 Manihot esculenta HOM05D003913 ORTHO05D004803 5.5e-82 308.9 395 79.7
Potri.019G087200 Populus trichocarpa HOM05D003913 ORTHO05D004803 9.8e-79 298.1 384 80.7
Prupe.8G049100 Prunus persica HOM05D003913 ORTHO05D004803 2.2e-78 297.0 384 82.3
Lalb_Chr20g0121511 Lupinus albus HOM05D003913 ORTHO05D004803 2.4e-77 293.5 381 54.6
FvH4_5g22350 Fragaria vesca HOM05D003913 ORTHO05D004803 1.6e-76 290.8 384 81.8
FAN18G2025 Fragaria x ananassa HOM05D003913 ORTHO05D004803 1.6e-76 290.8 384 81.8
FAN18G2798 Fragaria x ananassa HOM05D003913 ORTHO05D004803 1.6e-76 290.8 384 81.8
MD07G1041000 Malus domestica HOM05D003913 ORTHO05D004803 2.7e-76 290.0 385 81.6
RcHm_v2.0_Chr7g0210071 Rosa chinensis HOM05D003913 ORTHO05D004803 7.7e-76 288.5 384 81.5
MD02G1272000 Malus domestica HOM05D003913 ORTHO05D004803 1.0e-75 288.1 385 82.3
FAN08G0696 Fragaria x ananassa HOM05D003913 ORTHO05D004803 1.7e-75 287.3 383 81.7
Lj5g0008809 Lotus japonicus HOM05D003913 ORTHO05D004803 1.1e-74 284.6 387 49.4
Ciclev10008663m.g Citrus clementina HOM05D003913 ORTHO05D004803 9.5e-74 281.6 385 79.0
PSO541G3150 Papaver somniferum HOM05D003913 ORTHO05D004803 8.0e-73 278.5 359 84.4
Actinidia29569 Actinidia chinensis HOM05D003913 ORTHO05D004803 1.4e-72 277.7 391 78.3
TWI12G0147 Tripterygium wilfordii HOM05D003913 ORTHO05D004803 1.4e-72 277.7 390 79.0
Nitab4.5_0002890g0020 Nicotiana tabacum HOM05D003913 ORTHO05D004803 1.7e-70 270.8 348 57.8
CARHR290910 Cardamine hirsuta HOM05D003913 ORTHO05D004803 1.1e-69 268.1 393 66.9
FAN04G3257 Fragaria x ananassa HOM05D003913 ORTHO05D004803 2.4e-69 266.9 417 67.9
Aqoxy1G00206 Aquilegia oxysepala HOM05D003913 ORTHO05D004803 4.1e-69 266.2 386 73.8
BolC6t38638H Brassica oleracea HOM05D003913 ORTHO05D004803 4.1e-69 266.2 400 55.0
Nitab4.5_0000366g0190 Nicotiana tabacum HOM05D003913 ORTHO05D004803 5.4e-69 265.8 398 74.9
arahy.Tifrunner.gnm1.ann1.0Z7T57 Arachis hypogaea HOM05D003913 ORTHO05D004803 1.6e-68 264.2 387 47.0
BraA07t30691Z Brassica rapa HOM05D003913 ORTHO05D004803 4.5e-68 262.7 400 62.0
C06p35320 Brassica napus HOM05D003913 ORTHO05D004803 5.9e-68 262.3 414 57.2
Gorai.006G187200 Gossypium raimondii HOM05D003913 ORTHO05D004803 1.0e-67 261.5 392 48.2
VMungo1080G1176 Vigna mungo HOM05D003913 ORTHO05D004803 1.7e-67 260.8 388 60.6
Atru.chr13.1880 Acer truncatum HOM05D003913 ORTHO05D004803 2.3e-67 260.4 386 77.5
Phvul.011G104600 Phaseolus vulgaris HOM05D003913 ORTHO05D004803 2.3e-67 260.4 395 63.5
CSS0047372 Camellia sinensis var. sinensis HOM05D003913 ORTHO05D004803 3.8e-67 259.6 392 75.3
Glyma.20G173100 Glycine max HOM05D003913 ORTHO05D004803 3.8e-67 259.6 381 58.3
Lj2C196T3 Lonicera japonica HOM05D003913 ORTHO05D004803 5.0e-67 259.2 389 53.2
PGSC0003DMG400028735 Solanum tuberosum HOM05D003913 ORTHO05D004803 6.6e-67 258.8 398 73.9
A07p30560 Brassica napus HOM05D003913 ORTHO05D004803 8.6e-67 258.5 414 48.8
CANSAT25G1043 Cannabis sativa HOM05D003913 ORTHO05D004803 1.1e-66 258.1 392 75.0
Gohir.D09G165400 Gossypium hirsutum HOM05D003913 ORTHO05D004803 1.1e-66 258.1 392 47.7
arahy.Tifrunner.gnm1.ann1.F1WV5B Arachis hypogaea HOM05D003913 ORTHO05D004803 1.5e-66 257.7 387 46.3
RcHm_v2.0_Chr6g0272901 Rosa chinensis HOM05D003913 ORTHO05D004803 2.5e-66 256.9 384 77.6
ECA236G4407 Erigeron canadensis HOM05D003913 ORTHO05D004803 3.3e-66 256.5 375 49.9
BcaB03g15621 Brassica carinata HOM05D003913 ORTHO05D004803 9.5e-66 255.0 390 64.6
Lsat_1_v5_gn_9_43060 Lactuca sativa HOM05D003913 ORTHO05D004803 9.5e-66 255.0 386 75.6
FvH4_2g12470 Fragaria vesca HOM05D003913 ORTHO05D004803 3.6e-65 253.1 384 77.3
Potri.013G116900 Populus trichocarpa HOM05D003913 ORTHO05D004803 3.6e-65 253.1 393 67.4
Solyc07g008860.3 Solanum lycopersicum HOM05D003913 ORTHO05D004803 4.7e-65 252.7 398 73.6
CiPaw.15G007000 Carya illinoinensis HOM05D003913 ORTHO05D004803 6.1e-65 252.3 388 69.8
Sopen07g004790 Solanum pennellii HOM05D003913 ORTHO05D004803 1.8e-64 250.8 398 73.4
Oeu053831.1 Olea europaea HOM05D003913 ORTHO05D004803 3.0e-64 250.0 385 68.8
Sabra13G0099000 Salix brachista HOM05D003913 ORTHO05D004803 6.8e-64 248.8 384 75.5
FAN24G0738 Fragaria x ananassa HOM05D003913 ORTHO05D004803 8.9e-64 248.4 384 76.8
BolC6t39643H Brassica oleracea HOM05D003913 ORTHO05D004803 1.2e-63 248.1 387 65.4
TWI75G1061 Tripterygium wilfordii HOM05D003913 ORTHO05D004803 1.2e-63 248.1 387 74.2
A07p37990 Brassica napus HOM05D003913 ORTHO05D004803 5.7e-63 245.7 395 61.5
Nn3g16733 Nelumbo nucifera HOM05D003913 ORTHO05D004803 1.3e-62 244.6 389 72.2
BcaC08g46615 Brassica carinata HOM05D003913 ORTHO05D004803 2.9e-62 243.4 387 63.8
TAR625G1217 Trochodendron aralioides HOM05D003913 ORTHO05D004803 4.9e-62 242.7 386 73.3
PSO675G8150 Papaver somniferum HOM05D003913 ORTHO05D004803 6.4e-62 242.3 384 76.3
C06p45910 Brassica napus HOM05D003913 ORTHO05D004803 1.4e-61 241.1 381 64.8
AL2G31420 Arabidopsis lyrata HOM05D003913 ORTHO05D004803 3.2e-61 240.0 387 64.1
LjContig00222g0022410 Lotus japonicus HOM05D003913 ORTHO05D004803 3.2e-61 240.0 386 44.6
Lj4A109T49 Lonicera japonica HOM05D003913 ORTHO05D004803 6.0e-60 235.7 384 73.7
BraA07t31364Z Brassica rapa HOM05D003913 ORTHO05D004803 1.7e-59 234.2 385 64.2
Rhsim04G0038100 Rhododendron simsii HOM05D003913 ORTHO05D004803 1.7e-59 234.2 408 69.9
ECA232G2276 Erigeron canadensis HOM05D003913 ORTHO05D004803 3.0e-59 233.4 391 71.1
Thecc.08G198300 Theobroma cacao HOM05D003913 ORTHO05D004803 1.1e-58 231.5 398 46.2
Thhalv10018505m.g Eutrema salsugineum HOM05D003913 ORTHO05D004803 1.9e-58 230.7 385 63.1
BcaC08g45753 Brassica carinata HOM05D003913 ORTHO05D004803 4.3e-58 229.6 390 61.8
Aa31LG4G8790 Aethionema arabicum HOM05D003913 ORTHO05D004803 5.6e-58 229.2 403 61.0
SalBow7G2889 Salvia bowleyana HOM05D003913 ORTHO05D004803 5.6e-58 229.2 394 60.4
Gorai.010G129100 Gossypium raimondii HOM05D003913 ORTHO05D004803 2.1e-57 227.3 391 45.0
Gohir.A06G109200 Gossypium hirsutum HOM05D003913 ORTHO05D004803 3.6e-57 226.5 362 48.1
Gohir.D06G113300 Gossypium hirsutum HOM05D003913 ORTHO05D004803 8.0e-57 225.3 391 44.8
GSVIVG01015205001 Vitis vinifera HOM05D003913 ORTHO05D004803 8.0e-57 225.3 395 54.4
Cc11_g02860 Coffea canephora HOM05D003913 ORTHO05D004803 1.4e-56 224.6 389 65.6
Ah.03g146560 Amaranthus hybridus HOM05D003913 ORTHO05D004803 1.8e-56 224.2 392 71.9
Sp5g26870 Schrenkiella parvula HOM05D003913 ORTHO05D004803 5.2e-56 222.6 388 61.3
SpUn0020_0100 Schrenkiella parvula HOM05D003913 ORTHO05D004803 5.2e-56 222.6 388 61.3
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 1.2e-55 221.5 379 38.5
MSTRG.9615 Avicennia marina HOM05D003913 ORTHO05D004803 1.5e-55 221.1 393 66.7
Gohir.A09G169700 Gossypium hirsutum HOM05D003913 ORTHO05D004803 1.3e-54 218.0 392 43.6
DCAR_000644 Daucus carota HOM05D003913 ORTHO05D004803 1.7e-54 217.6 382 46.6
MBI10_g42737_MAGBIO Magnolia biondii HOM05D003913 ORTHO05D004803 2.2e-54 217.2 345 79.4
Hund19608 Selenicereus undatus HOM05D003913 ORTHO05D004803 3.7e-54 216.5 427 60.0
Aa31LG7G6630 Aethionema arabicum HOM05D003913 ORTHO05D004803 4.9e-54 216.1 394 35.8
THA.LOC104826775 Tarenaya hassleriana HOM05D003913 ORTHO05D004803 6.4e-54 215.7 388 61.9
HanXRQChr11g0320411 Helianthus annuus HOM05D003913 ORTHO05D004803 1.1e-53 214.9 393 70.0
AT1G71840 Arabidopsis thaliana HOM05D003913 ORTHO05D004803 1.9e-53 214.2 387 61.0
Psat6g188560 Pisum sativum HOM05D000168 ORTHO05D004803 2.4e-53 213.8 369 36.6
CDE08G0059 Ceratophyllum demersum HOM05D003913 ORTHO05D004803 4.6e-52 209.5 391 59.6
arahy.Tifrunner.gnm1.ann1.A7TGXU Arachis hypogaea HOM05D003913 ORTHO05D004803 7.8e-52 208.8 408 39.5
EL10Ac6g15251 Beta vulgaris HOM05D003913 ORTHO05D004803 2.3e-51 207.2 392 68.9
Ca_30575_v3 Cicer arietinum L. HOM05D003913 ORTHO05D004803 1.5e-50 204.5 393 35.1
SGA_v2.0_scaffold114G31919 Striga asiatica HOM05D003913 ORTHO05D004803 2.1e-49 200.7 341 70.1
AUR62017935 Chenopodium quinoa HOM05D003913 ORTHO05D004803 4.7e-49 199.5 402 60.2
VMungo0720G0336 Vigna mungo HOM05D003913 ORTHO05D004803 3.1e-48 196.8 404 55.2
GSVIVG01001592001 Vitis vinifera HOM05D003913 ORTHO05D004803 4.0e-48 196.4 393 66.2
Nitab4.5_0002890g0010 Nicotiana tabacum HOM05D003913 ORTHO05D004803 6.8e-48 195.7 329 45.6
ATR0001G003 Amborella trichopoda HOM05D003913 ORTHO05D004803 1.2e-47 194.9 342 45.3
Hma1.2p1_0276F.1_g111300 Hydrangea macrophylla HOM05D003913 ORTHO05D004803 1.2e-47 194.9 315 73.3
Sabra19G0097800 Salix brachista HOM05D003913 ORTHO05D004803 2.0e-47 194.1 390 69.7
Sc16g0003970 Simmondsia chinensis HOM05D003913 ORTHO05D004803 4.4e-47 193.0 338 72.5
COL.COLO4_13734 Corchorus olitorius HOM05D003913 ORTHO05D004803 9.9e-47 191.8 337 48.7
Duzib211G0424 Durio zibethinus HOM05D003913 ORTHO05D004803 9.9e-47 191.8 392 44.1
Oeu053830.1 Olea europaea HOM05D003913 ORTHO05D004803 9.9e-47 191.8 385 62.6
Cfa018220 Carpinus fangiana HOM05D003913 ORTHO05D004803 1.3e-46 191.4 341 72.4
Sabra19G0101300 Salix brachista HOM05D003913 ORTHO05D004803 4.9e-46 189.5 390 67.7
Rhsim06G0087400 Rhododendron simsii HOM05D003913 ORTHO05D004803 1.9e-45 187.6 481 58.0
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 5.4e-45 186.0 274 50.4
Os03g0685600 Oryza sativa ssp. japonica HOM05D003913 ORTHO05D004803 5.4e-45 186.0 393 57.3
Pp3c14_20020 Physcomitrium patens HOM05D003913 ORTHO05D004803 5.4e-45 186.0 401 65.3
EL10Ac5g10958 Beta vulgaris HOM05D003913 ORTHO05D004803 2.7e-44 183.7 396 32.8
FAN20G2057 Fragaria x ananassa HOM05D003913 ORTHO05D004803 3.5e-44 183.3 308 56.5
Zm00001eb362180 Zea mays HOM05D003913 ORTHO05D004803 3.5e-44 183.3 398 50.3
HPP92_008098 Vanilla planifolia HOM05D003913 ORTHO05D004803 1.7e-43 181.0 388 61.3
Migut.I00088 Erythranthe guttata HOM05D003913 ORTHO05D004803 4.7e-41 172.9 397 45.3
DCAR_004603 Daucus carota HOM05D000366 ORTHO05D000437 1.8e-40 171.0 108 75.9
Peaxi162Scf01838g00003 Petunia axillaris HOM05D000173 ORTHO05D000316 1.8e-40 171.0 284 40.1
CARHR124080 Cardamine hirsuta HOM05D003913 ORTHO05D004803 5.2e-40 169.5 374 32.9
Carub.0002s1860 Capsella rubella HOM05D003913 ORTHO05D004803 1.2e-39 168.3 387 56.8
vmacro21210 Vaccinium macrocarpon HOM05D003913 ORTHO05D004803 2.0e-39 167.5 408 57.6
Zm00001eb139680 Zea mays HOM05D003913 ORTHO05D004803 3.4e-39 166.8 389 58.6
AUR62003626 Chenopodium quinoa HOM05D003913 ORTHO05D004803 1.1e-37 161.8 119 65.5
Cpa.g.sc2399.1 Carica papaya HOM05D003913 ORTHO05D004803 1.4e-37 161.4 278 77.3
Haze_17883 Corylus avellana HOM05D003913 ORTHO05D004803 7.1e-37 159.1 485 55.9
MBI10_g41322_MAGBIO Magnolia biondii HOM05D003913 ORTHO05D004803 7.1e-37 159.1 111 70.3
Psat6g019720 Pisum sativum HOM05D003913 ORTHO05D004803 7.1e-37 159.1 268 36.9
SEGI_39165 Sequoiadendron giganteum HOM05D003913 ORTHO05D004803 1.6e-36 157.9 387 56.8
Migut.J01123 Erythranthe guttata HOM05D003913 ORTHO05D004803 4.6e-36 156.4 401 32.2
QL02p034830 Quercus lobata HOM05D003913 ORTHO05D004803 7.8e-36 155.6 101 77.2
TPR.G30584 Trifolium pratense HOM05D003913 ORTHO05D004803 1.3e-35 154.8 398 30.2
Glyma.09G057500 Glycine max HOM05D003913 ORTHO05D004803 3.0e-35 153.7 162 49.4
TAR381G0993 Trochodendron aralioides HOM05D003913 ORTHO05D004803 5.1e-35 152.9 278 73.4
Mapoly0155s0005 Marchantia polymorpha HOM05D003913 ORTHO05D004803 1.1e-34 151.8 397 36.5
Eucgr.E02330 Eucalyptus grandis HOM05D003913 ORTHO05D004803 2.5e-34 150.6 279 71.0
unitig_747.g21315 Utricularia gibba HOM05D003913 ORTHO05D004803 9.6e-34 148.7 395 29.6
AagrBONN_evm.TU.Sc2ySwM_368.376 Anthoceros agrestis HOM05D003913 ORTHO05D004803 1.2e-33 148.3 409 56.2
CANSAT11G1897 Cannabis sativa HOM05D003913 ORTHO05D004803 3.1e-32 143.7 100 72.0
COL.COLO4_03395 Corchorus olitorius HOM05D003913 ORTHO05D004803 9.0e-32 142.1 116 62.9
Glyma.10G218600 Glycine max HOM05D003913 ORTHO05D004803 2.6e-31 140.6 118 61.0
AUR62024845 Chenopodium quinoa HOM05D003913 ORTHO05D004803 5.8e-31 139.4 381 28.6
Migut.D01748 Erythranthe guttata HOM05D003913 ORTHO05D004803 7.6e-31 139.0 342 62.6
EL10Ac9g21859 Beta vulgaris HOM05D003913 ORTHO05D004803 4.6e-28 129.8 328 28.0
AUR62001664 Chenopodium quinoa HOM05D003913 ORTHO05D004803 1.6e-25 121.3 344 27.0
Hma1.2p1_0276F.1_g111310 Hydrangea macrophylla HOM05D003913 ORTHO05D004803 2.1e-25 120.9 127 51.2
Thecc.09G236800 Theobroma cacao HOM05D003913 ORTHO05D004803 3.6e-25 120.2 379 28.0
Glyma.10G218500 Glycine max HOM05D003913 ORTHO05D004803 5.3e-24 116.3 124 49.2
SMO347G0114 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 1.7e-22 111.3 391 34.3
Psat6g021120 Pisum sativum HOM05D003913 ORTHO05D004803 3.2e-21 107.1 127 47.2
SMO367G0065 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 7.1e-21 105.9 353 26.9
Lj4C56G20 Lonicera japonica HOM05D003913 ORTHO05D004803 2.1e-20 104.4 213 34.7
Cre12.g487200 Chlamydomonas reinhardtii HOM05D003913 ORTHO05D004803 2.7e-20 104.0 414 27.3
PSO455G0073 Papaver somniferum HOM05D003913 ORTHO05D004803 6.0e-20 102.8 64 75.0
SMO343G0013 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 1.8e-19 101.3 149 36.2
SHI13909 Sapria himalayana HOM05D003913 ORTHO05D004803 2.1e-17 94.4 109 45.9
Medtr7g079470 Medicago truncatula HOM05D003913 ORTHO05D004803 3.7e-17 93.6 65 67.7
BolC6t38649H Brassica oleracea HOM05D003913 ORTHO05D004803 8.1e-17 92.4 145 36.6
CBR_g49506 Chara braunii HOM05D003913 ORTHO05D004803 5.5e-13 79.7 400 54.0
MCO10G384 Micromonas commoda HOM05D003913 ORTHO05D004803 9.3e-13 79.0 376 39.6
A02p17440 Brassica napus HOM05D003913 ORTHO05D004803 4.6e-12 76.6 54 63.0
Medtr7g111550 Medicago truncatula HOM05D003913 ORTHO05D004803 1.3e-11 75.1 102 40.2
BraA02t06789Z Brassica rapa HOM05D003913 ORTHO05D004803 2.3e-11 74.3 54 61.1
Glyma.17G173200 Glycine max HOM05D003913 ORTHO05D004803 4.3e-10 70.1 42 71.4
BolC6t38648H Brassica oleracea HOM05D003420 ORTHO05D003970 6.9e-08 62.8 57 50.9
CSS0010217 Camellia sinensis var. sinensis HOM05D003913 ORTHO05D004803 7.6e-07 59.3 36 80.6
BolC6t38646H Brassica oleracea HOM05D003913 ORTHO05D004803 1.7e-06 58.2 148 27.7
Psat6g090360 Pisum sativum HOM05D005323 ORTHO05D006820 8.4e-06 55.8 78 34.6


User provided reference genes

Program Settings