Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024984.2 Cucumis melo HOM05D000582 ORTHO05D166929 8.9e-66 253.4 127 100.0
CsaV3_1G040870 Cucumis sativus L. HOM05D000582 ORTHO05D000456 3.0e-21 105.5 56 87.5
MELO3C029299.2 Cucumis melo HOM05D000582 ORTHO05D000456 5.7e-20 101.3 55 85.5
Sed0007843 Sechium edule HOM05D000582 ORTHO05D000456 2.2e-19 99.4 56 82.1
QL11p000552 Quercus lobata HOM05D000582 ORTHO05D000456 1.0e-16 90.5 56 73.2
CiPaw.04G144500 Carya illinoinensis HOM05D000582 ORTHO05D000456 5.0e-16 88.2 56 73.2
VMungo1215G2796 Vigna mungo HOM05D000582 ORTHO05D000456 5.0e-16 88.2 55 72.7
Glyma.13G109700 Glycine max HOM05D000582 ORTHO05D000456 6.5e-16 87.8 55 72.7
Glyma.17G050000 Glycine max HOM05D000582 ORTHO05D000456 6.5e-16 87.8 55 72.7
Dinv25564 Davidia involucrata HOM05D000582 ORTHO05D000456 1.1e-15 87.0 56 69.6
TPR.G9434 Trifolium pratense HOM05D000582 ORTHO05D000456 1.1e-15 87.0 55 69.1
Cfa003015 Carpinus fangiana HOM05D000582 ORTHO05D000456 1.4e-15 86.7 56 71.4
Dinv42381 Davidia involucrata HOM05D000582 ORTHO05D000456 1.9e-15 86.3 56 69.6
CANSAT56G4064 Cannabis sativa HOM05D000582 ORTHO05D000456 2.5e-15 85.9 56 71.4
Sabra18G0058200 Salix brachista HOM05D000582 ORTHO05D000456 3.2e-15 85.5 56 66.1
Haze_25989 Corylus avellana HOM05D000582 ORTHO05D000456 5.5e-15 84.7 56 69.6
Haze_25997 Corylus avellana HOM05D000582 ORTHO05D000456 5.5e-15 84.7 56 69.6
MELO3C023799.2 Cucumis melo HOM05D006600 ORTHO05D168989 5.5e-15 84.7 49 83.7
Hma1.2p1_0179F.1_g079590 Hydrangea macrophylla HOM05D000582 ORTHO05D000456 5.5e-15 84.7 56 69.6
Peaxi162Scf00088g01322 Petunia axillaris HOM05D000582 ORTHO05D000456 5.5e-15 84.7 55 69.1
Zm00001eb177330 Zea mays HOM05D000582 ORTHO05D000456 7.2e-15 84.3 56 67.9
CAN.G763.11 Capsicum annuum HOM05D000582 ORTHO05D000456 1.2e-14 83.6 55 67.3
Nitab4.5_0002008g0010 Nicotiana tabacum HOM05D000582 ORTHO05D000456 1.2e-14 83.6 55 69.1
Potri.018G065600 Populus trichocarpa HOM05D000582 ORTHO05D000456 1.2e-14 83.6 56 66.1
QL11p000610 Quercus lobata HOM05D000582 ORTHO05D000456 1.6e-14 83.2 56 67.9
Sabra06G0111800 Salix brachista HOM05D000582 ORTHO05D000456 1.6e-14 83.2 56 67.9
Sabra06G0111900 Salix brachista HOM05D000582 ORTHO05D000456 1.6e-14 83.2 56 67.9
COL.COLO4_18108 Corchorus olitorius HOM05D000582 ORTHO05D000456 2.1e-14 82.8 55 70.9
FAN28G0691 Fragaria x ananassa HOM05D000582 ORTHO05D000456 2.1e-14 82.8 55 67.3
Gohir.A05G033500 Gossypium hirsutum HOM05D000582 ORTHO05D000456 2.1e-14 82.8 55 69.1
Oeu049130.1 Olea europaea HOM05D000582 ORTHO05D000456 2.1e-14 82.8 55 67.3
Phvul.003G131600 Phaseolus vulgaris HOM05D000582 ORTHO05D000456 2.1e-14 82.8 55 67.3
FvH4_1g08510 Fragaria vesca HOM05D000582 ORTHO05D000456 2.7e-14 82.4 55 67.3
FAN19G2034 Fragaria x ananassa HOM05D000582 ORTHO05D000456 2.7e-14 82.4 55 67.3
Potri.006G142800 Populus trichocarpa HOM05D000582 ORTHO05D000456 2.7e-14 82.4 56 67.9
SGA_v2.0_scaffold308G48073 Striga asiatica HOM05D000582 ORTHO05D000456 2.7e-14 82.4 53 69.8
PGSC0003DMG400030890 Solanum tuberosum HOM05D000582 ORTHO05D000456 3.6e-14 82.0 55 65.5
Zm00001eb040310 Zea mays HOM05D000582 ORTHO05D000456 3.6e-14 82.0 56 66.1
Oeu020556.1 Olea europaea HOM05D000582 ORTHO05D000456 4.6e-14 81.6 66 59.1
MD00G1142600 Malus domestica HOM05D000582 ORTHO05D000456 6.1e-14 81.3 55 69.1
Manes.03G039700 Manihot esculenta HOM05D000582 ORTHO05D000456 6.1e-14 81.3 56 67.9
Actinidia29925 Actinidia chinensis HOM05D000582 ORTHO05D000456 7.9e-14 80.9 56 66.1
Gohir.D05G035000 Gossypium hirsutum HOM05D000582 ORTHO05D000456 7.9e-14 80.9 55 67.3
Gorai.009G035400 Gossypium raimondii HOM05D000582 ORTHO05D000456 7.9e-14 80.9 55 67.3
Solyc07g007870.3 Solanum lycopersicum HOM05D000582 ORTHO05D000456 7.9e-14 80.9 55 63.6
MD15G1216200 Malus domestica HOM05D000582 ORTHO05D000456 1.8e-13 79.7 55 69.1
TAR383G0830 Trochodendron aralioides HOM05D000582 ORTHO05D000456 1.8e-13 79.7 57 68.4
AUR62025196 Chenopodium quinoa HOM05D000582 ORTHO05D000456 2.3e-13 79.3 55 65.5
Lj7A686T68 Lonicera japonica HOM05D000582 ORTHO05D000456 2.3e-13 79.3 56 64.3
Os08g0459600 Oryza sativa ssp. japonica HOM05D000582 ORTHO05D000456 2.3e-13 79.3 56 64.3
AUR62028981 Chenopodium quinoa HOM05D000582 ORTHO05D000456 3.9e-13 78.6 55 65.5
Duzib168G0256 Durio zibethinus HOM05D000582 ORTHO05D000456 3.9e-13 78.6 55 65.5
RcHm_v2.0_Chr2g0094641 Rosa chinensis HOM05D000582 ORTHO05D000456 3.9e-13 78.6 55 63.6
Duzib150G1170 Durio zibethinus HOM05D000582 ORTHO05D000456 5.1e-13 78.2 55 65.5
Gorai.010G087400 Gossypium raimondii HOM05D000582 ORTHO05D000456 5.1e-13 78.2 55 65.5
Cpa.g.sc28.58 Carica papaya HOM05D000582 ORTHO05D000456 6.7e-13 77.8 55 69.1
Migut.J00934 Erythranthe guttata HOM05D000582 ORTHO05D000456 6.7e-13 77.8 53 66.0
Gohir.D06G074800 Gossypium hirsutum HOM05D000582 ORTHO05D000456 6.7e-13 77.8 55 65.5
Sopen07g003770 Solanum pennellii HOM05D000582 ORTHO05D000456 6.7e-13 77.8 55 61.8
Actinidia38475 Actinidia chinensis HOM05D000582 ORTHO05D000456 8.8e-13 77.4 56 64.3
Aa31sc133G80 Aethionema arabicum HOM05D000582 ORTHO05D000456 8.8e-13 77.4 55 65.5
ECA234G0961 Erigeron canadensis HOM05D000582 ORTHO05D000456 8.8e-13 77.4 56 62.5
Lj4g0021074 Lotus japonicus HOM05D000582 ORTHO05D000456 8.8e-13 77.4 55 61.8
Hund26020 Selenicereus undatus HOM05D000582 ORTHO05D000456 8.8e-13 77.4 55 60.0
CDE11G0410 Ceratophyllum demersum HOM05D000582 ORTHO05D000456 1.1e-12 77.0 56 62.5
MELO3C027259.2 Cucumis melo HOM05D000582 ORTHO05D000456 1.1e-12 77.0 49 79.6
MELO3C027538.2 Cucumis melo HOM05D000582 ORTHO05D000456 1.1e-12 77.0 49 79.6
Lsat_1_v5_gn_5_141041 Lactuca sativa HOM05D000582 ORTHO05D000456 1.1e-12 77.0 56 60.7
Cc06_g12110 Coffea canephora HOM05D000582 ORTHO05D000456 1.5e-12 76.6 56 66.1
PGR142G0262 Punica granatum HOM05D000582 ORTHO05D000456 1.5e-12 76.6 56 64.3
GSVIVG01015093001 Vitis vinifera HOM05D000582 ORTHO05D000456 2.5e-12 75.9 57 64.9
Glyma.17G049900 Glycine max HOM05D000582 ORTHO05D000456 3.3e-12 75.5 55 61.8
Nitab4.5_0003393g0050 Nicotiana tabacum HOM05D000582 ORTHO05D000456 3.3e-12 75.5 55 63.6
Hund16525 Selenicereus undatus HOM05D000582 ORTHO05D000456 3.3e-12 75.5 55 60.0
CDE05G0472 Ceratophyllum demersum HOM05D000582 ORTHO05D000456 4.3e-12 75.1 56 62.5
Eucgr.C00820 Eucalyptus grandis HOM05D000582 ORTHO05D000456 4.3e-12 75.1 56 60.7
Medtr4g125470 Medicago truncatula HOM05D000582 ORTHO05D000456 4.3e-12 75.1 55 60.0
PSO724G0476 Papaver somniferum HOM05D000582 ORTHO05D000456 4.3e-12 75.1 57 64.9
THA.LOC104826586 Tarenaya hassleriana HOM05D000582 ORTHO05D000456 4.3e-12 75.1 55 63.6
AUR62017980 Chenopodium quinoa HOM05D000582 ORTHO05D000456 5.7e-12 74.7 55 61.8
Glyma.13G109800 Glycine max HOM05D000582 ORTHO05D000456 5.7e-12 74.7 55 61.8
MBI13_g27163_MAGBIO Magnolia biondii HOM05D000582 ORTHO05D000456 5.7e-12 74.7 57 63.2
Prupe.7G200800 Prunus persica HOM05D000582 ORTHO05D000456 5.7e-12 74.7 55 65.5
SalBow6G3502 Salvia bowleyana HOM05D000582 ORTHO05D000456 5.7e-12 74.7 53 64.2
Hund16526 Selenicereus undatus HOM05D000582 ORTHO05D000456 5.7e-12 74.7 55 61.8
EL10Ac8g19104 Beta vulgaris HOM05D000582 ORTHO05D000456 7.4e-12 74.3 55 61.8
CANSAT56G1045 Cannabis sativa HOM05D000582 ORTHO05D000456 7.4e-12 74.3 56 58.9
CANSAT56G2187 Cannabis sativa HOM05D000582 ORTHO05D000456 7.4e-12 74.3 56 58.9
RcHm_v2.0_Chr2g0094631 Rosa chinensis HOM05D000582 ORTHO05D000456 7.4e-12 74.3 56 58.9
Lj4g0005894 Lotus japonicus HOM05D000582 ORTHO05D000456 9.7e-12 73.9 55 60.0
TWI63G0064 Tripterygium wilfordii HOM05D000582 ORTHO05D000456 9.7e-12 73.9 56 62.5
Psat4g017880 Pisum sativum HOM05D000582 ORTHO05D000456 1.3e-11 73.6 55 60.0
SHI02937 Sapria himalayana HOM05D000582 ORTHO05D000456 1.3e-11 73.6 54 61.1
Thecc.09G078600 Theobroma cacao HOM05D000582 ORTHO05D000456 1.3e-11 73.6 55 63.6
MSTRG.6001 Avicennia marina HOM05D000582 ORTHO05D000456 1.7e-11 73.2 53 62.3
DCAR_028326 Daucus carota HOM05D000582 ORTHO05D000456 1.7e-11 73.2 56 58.9
PSO135G0577 Papaver somniferum HOM05D000582 ORTHO05D000456 1.7e-11 73.2 57 61.4
Phvul.003G131500 Phaseolus vulgaris HOM05D000582 ORTHO05D000456 1.7e-11 73.2 55 60.0
unitig_21.g20984 Utricularia gibba HOM05D000582 ORTHO05D000456 1.7e-11 73.2 53 66.0
VMungo1215G2299 Vigna mungo HOM05D000582 ORTHO05D000456 1.7e-11 73.2 55 58.2
MD12G1067300 Malus domestica HOM05D000582 ORTHO05D000456 2.2e-11 72.8 55 63.6
HPP92_016194 Vanilla planifolia HOM05D000582 ORTHO05D000456 2.2e-11 72.8 57 63.2
EL10Ac6g15197 Beta vulgaris HOM05D000582 ORTHO05D000456 2.8e-11 72.4 76 48.7
Carub.0003s2719 Capsella rubella HOM05D000582 ORTHO05D000456 2.8e-11 72.4 55 60.0
HanXRQChr12g0354331 Helianthus annuus HOM05D000582 ORTHO05D000456 3.7e-11 72.0 56 57.1
RcHm_v2.0_Chr7g0211621 Rosa chinensis HOM05D000582 ORTHO05D000456 3.7e-11 72.0 57 59.6
FAN26G3356 Fragaria x ananassa HOM05D000582 ORTHO05D000456 4.8e-11 71.6 56 57.1
FAN28G1583 Fragaria x ananassa HOM05D000582 ORTHO05D000456 4.8e-11 71.6 56 60.7
FvH4_1g08490 Fragaria vesca HOM05D000582 ORTHO05D000456 6.3e-11 71.2 59 57.6
ATR0598G172 Amborella trichopoda HOM05D000582 ORTHO05D000456 8.2e-11 70.9 55 61.8
FAN19G0992 Fragaria x ananassa HOM05D000582 ORTHO05D000456 8.2e-11 70.9 56 58.9
HanXRQChr10g0319681 Helianthus annuus HOM05D000582 ORTHO05D000456 8.2e-11 70.9 55 54.5
Nn3g18245 Nelumbo nucifera HOM05D000582 ORTHO05D000456 8.2e-11 70.9 57 61.4
THA.LOC104808886 Tarenaya hassleriana HOM05D000582 ORTHO05D000456 8.2e-11 70.9 55 63.6
TWI34G1425 Tripterygium wilfordii HOM05D000582 ORTHO05D000456 8.2e-11 70.9 56 58.9
FvH4_1g08454 Fragaria vesca HOM05D000582 ORTHO05D000456 1.1e-10 70.5 56 55.4
Hund26131 Selenicereus undatus HOM05D000582 ORTHO05D000456 1.1e-10 70.5 56 57.1
AUR62003670 Chenopodium quinoa HOM05D000582 ORTHO05D000456 1.4e-10 70.1 54 55.6
Aqoxy6G00619 Aquilegia oxysepala HOM05D000582 ORTHO05D000456 1.8e-10 69.7 57 57.9
FvH4_1g08453 Fragaria vesca HOM05D000582 ORTHO05D000456 4.1e-10 68.6 56 55.4
FAN26G2481 Fragaria x ananassa HOM05D000582 ORTHO05D000456 4.1e-10 68.6 56 57.1
Ah.03g139900 Amaranthus hybridus HOM05D000582 ORTHO05D000456 5.3e-10 68.2 55 54.5
FAN23G1766 Fragaria x ananassa HOM05D000582 ORTHO05D000456 5.3e-10 68.2 56 57.1
Lalb_Chr07g0181131 Lupinus albus HOM05D000582 ORTHO05D000456 5.3e-10 68.2 55 52.7
Potri.004G212100 Populus trichocarpa HOM05D000582 ORTHO05D000456 5.3e-10 68.2 56 58.9
Rhsim03G0228600 Rhododendron simsii HOM05D000582 ORTHO05D000456 5.3e-10 68.2 55 60.0
Sp3g24630 Schrenkiella parvula HOM05D000582 ORTHO05D000456 5.3e-10 68.2 55 58.2
arahy.Tifrunner.gnm1.ann1.HEV2WD Arachis hypogaea HOM05D000582 ORTHO05D000456 9.1e-10 67.4 52 59.6
FAN19G2932 Fragaria x ananassa HOM05D000582 ORTHO05D000456 9.1e-10 67.4 53 60.4
THA.LOC104808887 Tarenaya hassleriana HOM05D000582 ORTHO05D000456 9.1e-10 67.4 55 61.8
Thhalv10002563m.g Eutrema salsugineum HOM05D000582 ORTHO05D000456 1.2e-09 67.0 55 58.2
CARHR103770 Cardamine hirsuta HOM05D000582 ORTHO05D000456 1.5e-09 66.6 55 56.4
BcaB08g34516 Brassica carinata HOM05D000582 ORTHO05D000456 2.0e-09 66.2 55 56.4
BcaC01g03142 Brassica carinata HOM05D000582 ORTHO05D000456 2.0e-09 66.2 55 56.4
C03p55640 Brassica napus HOM05D000582 ORTHO05D000456 2.0e-09 66.2 55 56.4
BolC3t17841H Brassica oleracea HOM05D000582 ORTHO05D000456 2.0e-09 66.2 55 56.4
RcHm_v2.0_Chr2g0150041 Rosa chinensis HOM05D000582 ORTHO05D000456 2.0e-09 66.2 57 54.4
PGR044G2387 Punica granatum HOM05D000582 ORTHO05D000456 2.6e-09 65.9 55 56.4
SEGI_32135 Sequoiadendron giganteum HOM05D000582 ORTHO05D000456 2.6e-09 65.9 55 54.5
AL3G43690 Arabidopsis lyrata HOM05D000582 ORTHO05D000456 4.5e-09 65.1 56 58.9
AUR62017979 Chenopodium quinoa HOM05D000582 ORTHO05D000456 5.9e-09 64.7 54 53.7
FAN26G1184 Fragaria x ananassa HOM05D000582 ORTHO05D000456 5.9e-09 64.7 56 55.4
Lalb_Chr13g0299481 Lupinus albus HOM05D000582 ORTHO05D000456 5.9e-09 64.7 55 56.4
Hund26164 Selenicereus undatus HOM05D000582 ORTHO05D000456 5.9e-09 64.7 55 54.5
Eucgr.C03542 Eucalyptus grandis HOM05D000582 ORTHO05D000456 7.7e-09 64.3 55 54.5
Lalb_Chr07g0190611 Lupinus albus HOM05D000582 ORTHO05D000456 7.7e-09 64.3 55 54.5
FAN23G1143 Fragaria x ananassa HOM05D000582 ORTHO05D000456 1.0e-08 63.9 57 56.1
SEGI_02045 Sequoiadendron giganteum HOM05D000582 ORTHO05D000456 1.0e-08 63.9 55 54.5
vmacro06331 Vaccinium macrocarpon HOM05D000582 ORTHO05D000456 1.0e-08 63.9 56 58.9
Hund26038 Selenicereus undatus HOM05D000582 ORTHO05D000456 1.3e-08 63.5 55 54.5
Eucgr.C03541 Eucalyptus grandis HOM05D000582 ORTHO05D000456 1.7e-08 63.2 55 54.5
Eucgr.C03551 Eucalyptus grandis HOM05D000582 ORTHO05D000456 1.7e-08 63.2 56 51.8
Eucgr.L03450 Eucalyptus grandis HOM05D000582 ORTHO05D000456 1.7e-08 63.2 56 53.6
A03p44790 Brassica napus HOM05D000582 ORTHO05D000456 2.2e-08 62.8 55 54.5
BraA03t13614Z Brassica rapa HOM05D000582 ORTHO05D000456 2.2e-08 62.8 55 54.5
Eucgr.C03549 Eucalyptus grandis HOM05D000582 ORTHO05D000456 2.2e-08 62.8 56 51.8
Eucgr.C03545 Eucalyptus grandis HOM05D000582 ORTHO05D000456 2.9e-08 62.4 56 53.6
Eucgr.C03550 Eucalyptus grandis HOM05D000582 ORTHO05D000456 2.9e-08 62.4 56 51.8
ATR0789G077 Amborella trichopoda HOM05D000582 ORTHO05D000456 3.8e-08 62.0 55 50.9
AT2G06050 Arabidopsis thaliana HOM05D000582 ORTHO05D000456 3.8e-08 62.0 52 59.6
Eucgr.C03214 Eucalyptus grandis HOM05D000582 ORTHO05D000456 3.8e-08 62.0 56 51.8
Eucgr.L02184 Eucalyptus grandis HOM05D000582 ORTHO05D000456 5.0e-08 61.6 56 50.0
FAN19G0882 Fragaria x ananassa HOM05D000582 ORTHO05D000456 5.0e-08 61.6 56 53.6
SEGI_13756 Sequoiadendron giganteum HOM05D000582 ORTHO05D000456 5.0e-08 61.6 55 54.5
SEGI_28403 Sequoiadendron giganteum HOM05D000582 ORTHO05D000456 5.0e-08 61.6 55 52.7
SEGI_32628 Sequoiadendron giganteum HOM05D000582 ORTHO05D000456 5.0e-08 61.6 55 52.7
SEGI_41277 Sequoiadendron giganteum HOM05D000582 ORTHO05D000456 5.0e-08 61.6 55 52.7
SEGI_35586 Sequoiadendron giganteum HOM05D000582 ORTHO05D000456 6.5e-08 61.2 55 50.9
SEGI_37900 Sequoiadendron giganteum HOM05D000582 ORTHO05D000456 8.5e-08 60.8 55 50.9
Sc03g0000400 Simmondsia chinensis HOM05D000582 ORTHO05D000456 8.5e-08 60.8 55 50.9
Eucgr.C03543 Eucalyptus grandis HOM05D000582 ORTHO05D000456 1.1e-07 60.5 56 51.8
PGR044G1502 Punica granatum HOM05D000582 ORTHO05D000456 1.1e-07 60.5 55 52.7
SEGI_07095 Sequoiadendron giganteum HOM05D000582 ORTHO05D000456 1.1e-07 60.5 61 52.5
Eucgr.C03548 Eucalyptus grandis HOM05D000582 ORTHO05D000456 1.9e-07 59.7 59 52.5
Lalb_Chr07g0190631 Lupinus albus HOM05D000582 ORTHO05D000456 1.9e-07 59.7 56 55.4
AUR62025200 Chenopodium quinoa HOM05D000582 ORTHO05D000456 2.5e-07 59.3 56 51.8
SEGI_23003 Sequoiadendron giganteum HOM05D000582 ORTHO05D000456 5.5e-07 58.2 55 50.9
SEGI_38975 Sequoiadendron giganteum HOM05D000582 ORTHO05D000456 5.5e-07 58.2 55 50.9
SEGI_39171 Sequoiadendron giganteum HOM05D000582 ORTHO05D000456 5.5e-07 58.2 55 49.1
SEGI_23997 Sequoiadendron giganteum HOM05D000582 ORTHO05D000456 9.4e-07 57.4 55 49.1
SEGI_16539 Sequoiadendron giganteum HOM05D000582 ORTHO05D000456 1.6e-06 56.6 54 53.7
FvH4_1g08451 Fragaria vesca HOM05D000582 ORTHO05D000456 2.1e-06 56.2 41 63.4
EL10Ac8g19101 Beta vulgaris HOM05D000582 ORTHO05D000456 6.1e-06 54.7 56 51.8


User provided reference genes

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