Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024969.2 Cucumis melo HOM05D005351 ORTHO05D006542 0.0e+00 1645.2 887 100.0
CsaV3_7G023840 Cucumis sativus L. HOM05D005351 ORTHO05D006542 0.0e+00 1461.8 886 90.6
Sed0019267 Sechium edule HOM05D005351 ORTHO05D006542 0.0e+00 1185.2 895 76.1
ClCG09G021540 Citrullus lanatus HOM05D005351 ORTHO05D006542 0.0e+00 1170.2 906 75.9
Cfa021891 Carpinus fangiana HOM05D005351 ORTHO05D006542 3.2e-130 470.3 896 42.6
Haze_09867 Corylus avellana HOM05D005351 ORTHO05D006542 4.2e-130 469.9 897 42.6
MD11G1037100 Malus domestica HOM05D005351 ORTHO05D006542 4.0e-120 436.8 872 40.7
Dinv40885 Davidia involucrata HOM05D005351 ORTHO05D006542 2.9e-115 420.6 946 38.2
Sabra16G0244200 Salix brachista HOM05D005351 ORTHO05D006542 3.3e-114 417.2 917 39.1
TWI38G2212 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 2.3e-112 411.0 915 37.5
Dinv10362 Davidia involucrata HOM05D005351 ORTHO05D006542 1.5e-111 408.3 877 39.8
Duzib213G0009 Durio zibethinus HOM05D005351 ORTHO05D006542 1.3e-110 405.2 935 38.8
TAR626G0279 Trochodendron aralioides HOM05D005351 ORTHO05D006542 1.8e-109 401.4 967 35.4
FAN11G1247 Fragaria x ananassa HOM05D005351 ORTHO05D006542 2.0e-108 397.9 864 39.0
FAN16G2746 Fragaria x ananassa HOM05D005351 ORTHO05D006542 1.3e-107 395.2 864 38.9
FAN25G1298 Fragaria x ananassa HOM05D005351 ORTHO05D006542 5.0e-107 393.3 868 38.8
FvH4_3g42241 Fragaria vesca HOM05D005351 ORTHO05D006542 8.6e-107 392.5 867 38.5
MD03G1035400 Malus domestica HOM05D005351 ORTHO05D006542 1.1e-106 392.1 810 40.2
Prupe.6G028400 Prunus persica HOM05D005351 ORTHO05D006542 1.2e-105 388.7 827 39.9
FAN21G2745 Fragaria x ananassa HOM05D005351 ORTHO05D006542 2.8e-105 387.5 865 38.6
TWI38G1324 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 2.8e-105 387.5 903 37.3
Gohir.A04G005700 Gossypium hirsutum HOM05D005351 ORTHO05D006542 1.2e-103 382.1 949 38.5
RcHm_v2.0_Chr5g0075571 Rosa chinensis HOM05D005351 ORTHO05D006542 4.9e-102 376.7 811 39.7
Gorai.009G450800 Gossypium raimondii HOM05D005351 ORTHO05D006542 1.9e-101 374.8 946 37.8
Gohir.D05G384000 Gossypium hirsutum HOM05D005351 ORTHO05D006542 9.2e-101 372.5 949 37.9
Cpa.g.sc12.108 Carica papaya HOM05D005351 ORTHO05D006542 6.6e-99 366.3 910 36.3
CSS0045517 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 2.8e-97 360.9 935 37.2
CSS0029070 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 8.9e-96 355.9 935 37.0
Manes.01G003500 Manihot esculenta HOM05D005351 ORTHO05D006542 2.0e-95 354.8 891 37.5
Ca_12455_v3 Cicer arietinum L. HOM05D005351 ORTHO05D006542 3.4e-95 354.0 896 37.3
QL08p002685 Quercus lobata HOM05D005351 ORTHO05D006542 1.1e-93 349.0 862 37.8
Medtr3g461030 Medicago truncatula HOM05D005351 ORTHO05D006542 7.1e-93 346.3 892 36.2
Thecc.07G007900 Theobroma cacao HOM05D005351 ORTHO05D006542 6.0e-92 343.2 909 36.9
Actinidia03651 Actinidia chinensis HOM05D005351 ORTHO05D006542 6.6e-91 339.7 878 35.8
Lj6g0009098 Lotus japonicus HOM05D005351 ORTHO05D006542 6.6e-91 339.7 887 35.5
vmacro09623 Vaccinium macrocarpon HOM05D005351 ORTHO05D006542 1.9e-90 338.2 883 35.1
Nn1g02046 Nelumbo nucifera HOM05D005351 ORTHO05D006542 3.6e-89 334.0 937 34.4
Phvul.006G059260 Phaseolus vulgaris HOM05D005351 ORTHO05D006542 1.1e-88 332.4 895 34.3
VMungo0540G1402 Vigna mungo HOM05D005351 ORTHO05D006542 4.0e-88 330.5 903 35.7
TPR.G17956 Trifolium pratense HOM05D005351 ORTHO05D006542 7.6e-87 326.2 885 34.9
COL.COLO4_07741 Corchorus olitorius HOM05D005351 ORTHO05D006542 4.9e-86 323.6 920 34.8
AT3G13225 Arabidopsis thaliana HOM05D005351 ORTHO05D006542 1.4e-85 322.0 874 34.2
Lalb_Chr15g0082311 Lupinus albus HOM05D005351 ORTHO05D006542 7.1e-85 319.7 905 33.6
Psat5g166400 Pisum sativum HOM05D005351 ORTHO05D006542 1.6e-81 308.5 916 33.7
Ciclev10007493m.g Citrus clementina HOM05D005351 ORTHO05D006542 2.1e-81 308.1 757 37.9
Atru.chr2.3836 Acer truncatum HOM05D005351 ORTHO05D006542 2.8e-81 307.8 732 37.4
Potri.001G371600 Populus trichocarpa HOM05D005351 ORTHO05D006542 4.7e-81 307.0 783 35.9
GSVIVG01014743001 Vitis vinifera HOM05D005351 ORTHO05D006542 1.1e-80 305.8 931 31.4
THA.LOC104815687 Tarenaya hassleriana HOM05D005351 ORTHO05D006542 2.4e-80 304.7 891 33.8
Carub.0003s1261 Capsella rubella HOM05D005351 ORTHO05D006542 4.4e-79 300.4 893 33.4
Cc05_g15290 Coffea canephora HOM05D005351 ORTHO05D006542 4.4e-79 300.4 904 34.1
PGR083G0334 Punica granatum HOM05D005351 ORTHO05D006542 1.3e-78 298.9 912 33.7
CiPaw.12G140700 Carya illinoinensis HOM05D005351 ORTHO05D006542 2.4e-77 294.7 715 40.0
SalBow8G3039 Salvia bowleyana HOM05D005351 ORTHO05D006542 3.2e-77 294.3 888 34.5
Hund23091 Selenicereus undatus HOM05D005351 ORTHO05D006542 3.9e-75 287.3 906 33.7
Lj8A180G96 Lonicera japonica HOM05D005351 ORTHO05D006542 5.1e-75 287.0 865 33.3
Nitab4.5_0005478g0030 Nicotiana tabacum HOM05D005351 ORTHO05D006542 4.3e-74 283.9 891 32.5
Sp3g11430 Schrenkiella parvula HOM05D005351 ORTHO05D006542 7.3e-74 283.1 900 33.8
Nitab4.5_0003328g0090 Nicotiana tabacum HOM05D005351 ORTHO05D006542 3.6e-73 280.8 897 32.4
Hma1.2p1_0193F.1_g083920 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 1.5e-71 275.4 935 33.0
Aa31LG8G460 Aethionema arabicum HOM05D005351 ORTHO05D006542 2.0e-71 275.0 938 31.1
CAN.G492.50 Capsicum annuum HOM05D005351 ORTHO05D006542 2.0e-71 275.0 901 33.2
MBI14_g37362_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 9.9e-71 272.7 961 31.3
MSTRG.15808 Avicennia marina HOM05D005351 ORTHO05D006542 3.8e-70 270.8 896 33.0
PGSC0003DMG400014404 Solanum tuberosum HOM05D005351 ORTHO05D006542 6.4e-70 270.0 904 32.3
Migut.M01635 Erythranthe guttata HOM05D005351 ORTHO05D006542 1.9e-69 268.5 927 33.9
AUR62035679 Chenopodium quinoa HOM05D005351 ORTHO05D006542 1.7e-67 261.9 919 33.1
BcaC09g48295 Brassica carinata HOM05D005351 ORTHO05D006542 2.5e-66 258.1 869 33.4
CANSAT11G0508 Cannabis sativa HOM05D005351 ORTHO05D006542 3.3e-66 257.7 786 33.7
Glyma.08G332700 Glycine max HOM05D005351 ORTHO05D006542 3.3e-66 257.7 804 33.3
arahy.Tifrunner.gnm1.ann1.1R5J8M Arachis hypogaea HOM05D005351 ORTHO05D006542 5.6e-66 256.9 900 33.6
BolC1t05130H Brassica oleracea HOM05D005351 ORTHO05D006542 1.1e-64 252.7 876 33.1
PSO210G4843 Papaver somniferum HOM05D005351 ORTHO05D006542 1.1e-64 252.7 910 32.9
AUR62017130 Chenopodium quinoa HOM05D005351 ORTHO05D006542 6.9e-64 250.0 923 31.7
Rhsim04G0010500 Rhododendron simsii HOM05D005351 ORTHO05D006542 2.0e-63 248.4 1016 30.4
BcaB04g21006 Brassica carinata HOM05D005351 ORTHO05D006542 4.5e-63 247.3 884 32.9
Nn3g19476 Nelumbo nucifera HOM05D005351 ORTHO05D006542 5.8e-63 246.9 885 31.5
ECA236G3149 Erigeron canadensis HOM05D005351 ORTHO05D006542 7.6e-63 246.5 885 31.5
ATR0751G017 Amborella trichopoda HOM05D005351 ORTHO05D006542 1.7e-62 245.4 954 31.1
PSO210G4950 Papaver somniferum HOM05D005351 ORTHO05D006542 1.9e-61 241.9 912 32.2
Oeu049420.1 Olea europaea HOM05D005351 ORTHO05D006542 9.3e-61 239.6 910 31.6
DCAR_013254 Daucus carota HOM05D005351 ORTHO05D006542 1.2e-60 239.2 912 30.8
HanXRQChr11g0334131 Helianthus annuus HOM05D005351 ORTHO05D006542 4.6e-60 237.3 898 31.0
Glyma.18G074300 Glycine max HOM05D005351 ORTHO05D006542 3.0e-59 234.6 799 32.8
BraA01t04066Z Brassica rapa HOM05D005351 ORTHO05D006542 3.9e-59 234.2 902 30.2
SGA_v2.0_scaffold168G38576 Striga asiatica HOM05D005351 ORTHO05D006542 3.3e-58 231.1 740 34.3
Eucgr.F02026 Eucalyptus grandis HOM05D005351 ORTHO05D006542 4.3e-58 230.7 737 34.6
HPP92_017874 Vanilla planifolia HOM05D005351 ORTHO05D006542 1.3e-57 229.2 893 31.7
Aqoxy1G04296 Aquilegia oxysepala HOM05D005351 ORTHO05D006542 6.9e-56 223.4 938 30.5
arahy.Tifrunner.gnm1.ann1.LDHF9L Arachis hypogaea HOM05D005351 ORTHO05D006542 2.0e-55 221.9 889 32.4
Ah.06g181500 Amaranthus hybridus HOM05D005351 ORTHO05D006542 2.7e-52 211.5 951 30.5
AL3G25030 Arabidopsis lyrata HOM05D005351 ORTHO05D006542 1.0e-51 209.5 745 31.3
EL10Ac4g07541 Beta vulgaris HOM05D005351 ORTHO05D006542 1.8e-51 208.8 960 30.0
CARHR087840 Cardamine hirsuta HOM05D005351 ORTHO05D006542 2.3e-51 208.4 738 31.8
unitig_0.g707 Utricularia gibba HOM05D005351 ORTHO05D006542 4.3e-50 204.1 882 29.8
C01p51820 Brassica napus HOM05D005351 ORTHO05D006542 4.8e-49 200.7 820 30.6
Thhalv10020110m.g Eutrema salsugineum HOM05D005351 ORTHO05D006542 4.1e-48 197.6 714 32.6
CDE05G2589 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 1.0e-46 193.0 941 29.0
A01p40300 Brassica napus HOM05D005351 ORTHO05D006542 6.5e-46 190.3 824 28.6
Sopen10g001810 Solanum pennellii HOM05D005351 ORTHO05D006542 1.0e-43 183.0 832 29.2
Os06g0298400 Oryza sativa ssp. japonica HOM05D005351 ORTHO05D006542 1.3e-41 176.0 863 29.0
Solyc10g005850.4 Solanum lycopersicum HOM05D005351 ORTHO05D006542 1.3e-41 176.0 838 29.1
Peaxi162Scf00018g00155 Petunia axillaris HOM05D005351 ORTHO05D006542 1.6e-41 175.6 795 30.7
Sc03g0011530 Simmondsia chinensis HOM05D005351 ORTHO05D006542 1.1e-37 162.9 573 32.8
CSS0030315 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 1.9e-37 162.2 408 33.3
CDE05G0998 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 2.5e-37 161.8 915 28.7
CSS0028997 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 5.5e-37 160.6 399 33.6
Zm00001eb281160 Zea mays HOM05D005351 ORTHO05D006542 2.1e-36 158.7 871 28.6
Zm00001eb381020 Zea mays HOM05D005351 ORTHO05D006542 5.1e-35 154.1 881 28.4
SEGI_31992 Sequoiadendron giganteum HOM05D005351 ORTHO05D006542 2.2e-33 148.7 999 29.0
Lsat_1_v5_gn_7_114900 Lactuca sativa HOM05D005351 ORTHO05D006542 2.6e-31 141.7 471 29.5
Hma1.2p1_3473F.1_g336240 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 1.9e-21 109.0 307 36.5
Hma1.2p1_3473F.1_g336230 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 4.0e-19 101.3 102 55.9
Lsat_1_v5_gn_6_88041 Lactuca sativa HOM05D005351 ORTHO05D006542 1.3e-17 96.3 333 30.0
Actinidia00844 Actinidia chinensis HOM05D005351 ORTHO05D006542 2.7e-15 88.6 452 26.8
CiPaw.12G140800 Carya illinoinensis HOM05D005351 ORTHO05D006542 1.2e-12 79.7 128 42.2
Oeu017994.1 Olea europaea HOM05D005351 ORTHO05D006542 1.2e-12 79.7 59 74.6
PSO782G2183 Papaver somniferum HOM05D005351 ORTHO05D006542 2.1e-12 79.0 62 69.4
Peaxi162Scf00018g00154 Petunia axillaris HOM05D005351 ORTHO05D006542 8.8e-11 73.6 60 61.7
Solyc10g005860.3 Solanum lycopersicum HOM05D005351 ORTHO05D006542 7.5e-10 70.5 60 60.0
Pp3c7_8580 Physcomitrium patens HOM05D005351 ORTHO05D006542 1.7e-09 69.3 227 32.6
Oeu017995.1 Olea europaea HOM05D005351 ORTHO05D006542 3.7e-09 68.2 196 29.1
AagrBONN_evm.TU.Sc2ySwM_368.1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 2.7e-07 62.0 113 43.4
Cc00_g23250 Coffea canephora HOM05D000874 ORTHO05D001049 3.5e-07 61.6 43 53.5
MBI14_g27041_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 8.5e-06 57.0 95 43.2


User provided reference genes

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