Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024968.2 Cucumis melo HOM05D006736 ORTHO05D008459 1.8e-55 219.2 122 100.0
CsaV3_7G023850 Cucumis sativus L. HOM05D006736 ORTHO05D008459 7.6e-38 160.6 123 81.3
ClCG09G021530 Citrullus lanatus HOM05D006736 ORTHO05D008459 6.0e-35 151.0 122 64.8
Sed0023265 Sechium edule HOM05D006736 ORTHO05D008459 9.9e-22 107.1 125 50.4
ClCG10G003900 Citrullus lanatus HOM05D006736 ORTHO05D008459 2.5e-17 92.4 77 63.6
ClCG10G004060 Citrullus lanatus HOM05D006736 ORTHO05D008459 2.5e-17 92.4 77 63.6
Cfa021889 Carpinus fangiana HOM05D006736 ORTHO05D008459 3.6e-16 88.6 77 61.0
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 3.6e-16 88.6 77 61.0
MELO3C014070.2 Cucumis melo HOM05D006736 ORTHO05D008459 3.6e-16 88.6 77 61.0
Lj6g0005510 Lotus japonicus HOM05D006736 ORTHO05D008459 4.8e-16 88.2 78 55.1
CiPaw.11G206800 Carya illinoinensis HOM05D006736 ORTHO05D008459 8.1e-16 87.4 118 44.9
Medtr3g461010 Medicago truncatula HOM05D006736 ORTHO05D008459 1.8e-15 86.3 80 55.0
QL08p003180 Quercus lobata HOM05D006736 ORTHO05D008459 2.4e-15 85.9 86 53.5
Duzib268G0079 Durio zibethinus HOM05D006736 ORTHO05D008459 3.1e-15 85.5 81 55.6
CsaV3_3G003890 Cucumis sativus L. HOM05D006736 ORTHO05D008459 4.0e-15 85.1 77 59.7
Duzib170G0862 Durio zibethinus HOM05D006736 ORTHO05D008459 5.3e-15 84.7 76 60.5
Phvul.006G059230 Phaseolus vulgaris HOM05D006736 ORTHO05D008459 1.2e-14 83.6 83 51.8
FvH4_3g42280 Fragaria vesca HOM05D006736 ORTHO05D008459 1.3e-13 80.1 74 54.1
FAN11G0661 Fragaria x ananassa HOM05D006736 ORTHO05D008459 1.3e-13 80.1 74 54.1
FAN21G1732 Fragaria x ananassa HOM05D006736 ORTHO05D008459 1.3e-13 80.1 74 54.1
FAN25G3397 Fragaria x ananassa HOM05D006736 ORTHO05D008459 1.3e-13 80.1 74 54.1
Sed0014616 Sechium edule HOM05D006736 ORTHO05D008459 1.7e-13 79.7 83 50.6
TPR.G17947 Trifolium pratense HOM05D006736 ORTHO05D008459 2.2e-13 79.3 75 52.0
Thecc.07G008000 Theobroma cacao HOM05D006736 ORTHO05D008459 2.9e-13 79.0 85 47.1
COL.COLO4_07740 Corchorus olitorius HOM05D006736 ORTHO05D008459 3.8e-13 78.6 81 58.0
FAN16G2066 Fragaria x ananassa HOM05D002691 ORTHO05D003304 3.8e-13 78.6 72 54.2
Sabra16G0244100 Salix brachista HOM05D006736 ORTHO05D008459 3.8e-13 78.6 77 51.9
Glyma.08G332400 Glycine max HOM05D006736 ORTHO05D008459 2.4e-12 75.9 75 54.7
Lalb_Chr15g0082301 Lupinus albus HOM05D006736 ORTHO05D008459 2.4e-12 75.9 77 53.2
Lalb_Chr20g0114121 Lupinus albus HOM05D006736 ORTHO05D008459 2.4e-12 75.9 77 55.8
Glyma.18G074500 Glycine max HOM05D006736 ORTHO05D008459 3.2e-12 75.5 93 45.2
Potri.001G371400 Populus trichocarpa HOM05D006736 ORTHO05D008459 3.2e-12 75.5 65 56.9
TWI38G1827 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 4.2e-12 75.1 63 61.9
GSVIVG01014741001 Vitis vinifera HOM05D006736 ORTHO05D008459 5.4e-12 74.7 87 48.3
Aqoxy4G01886 Aquilegia oxysepala HOM05D006736 ORTHO05D008459 9.3e-12 73.9 78 47.4
Oeu036994.1 Olea europaea HOM05D006736 ORTHO05D008459 2.1e-11 72.8 86 50.0
Psat5g166560 Pisum sativum HOM05D006736 ORTHO05D008459 2.1e-11 72.8 85 47.1
Sc03g0011540 Simmondsia chinensis HOM05D006736 ORTHO05D008459 2.1e-11 72.8 77 46.8
Ciclev10010675m.g Citrus clementina HOM05D006736 ORTHO05D008459 2.7e-11 72.4 83 51.8
TAR624G0983 Trochodendron aralioides HOM05D006736 ORTHO05D008459 2.7e-11 72.4 83 44.6
Manes.01G003400 Manihot esculenta HOM05D006736 ORTHO05D008459 3.5e-11 72.0 113 40.7
Prupe.6G028200 Prunus persica HOM05D006736 ORTHO05D008459 3.5e-11 72.0 85 49.4
CSS0010283 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 4.6e-11 71.6 92 45.7
Eucgr.F02027 Eucalyptus grandis HOM05D006736 ORTHO05D008459 4.6e-11 71.6 81 42.0
RcHm_v2.0_Chr5g0075611 Rosa chinensis HOM05D006736 ORTHO05D008459 6.0e-11 71.2 72 54.2
EL10Ac4g07540 Beta vulgaris HOM05D006736 ORTHO05D008459 7.9e-11 70.9 55 63.6
Cpa.g.sc12.109 Carica papaya HOM05D006736 ORTHO05D008459 1.0e-10 70.5 44 72.7
VMungo0540G0896 Vigna mungo HOM05D006736 ORTHO05D008459 1.0e-10 70.5 84 48.8
TWI39G1297 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 1.3e-10 70.1 50 66.0
Manes.05G200400 Manihot esculenta HOM05D006736 ORTHO05D008459 1.8e-10 69.7 71 59.2
Sabra11G0088600 Salix brachista HOM05D006736 ORTHO05D008459 1.8e-10 69.7 54 64.8
Rhsim06G0178800 Rhododendron simsii HOM05D006736 ORTHO05D008459 2.3e-10 69.3 61 55.7
Glyma.14G011700 Glycine max HOM05D006736 ORTHO05D008459 5.1e-10 68.2 71 53.5
Ah.06g181490 Amaranthus hybridus HOM05D006736 ORTHO05D008459 8.7e-10 67.4 47 68.1
Atru.chr2.3834 Acer truncatum HOM05D006736 ORTHO05D008459 1.1e-09 67.0 45 73.3
Solyc07g045200.1 Solanum lycopersicum HOM05D006736 ORTHO05D008459 1.1e-09 67.0 56 60.7
Sopen07g023750 Solanum pennellii HOM05D006736 ORTHO05D008459 1.1e-09 67.0 56 60.7
SGA_v2.0_scaffold49G18393 Striga asiatica HOM05D006736 ORTHO05D008459 1.1e-09 67.0 68 54.4
ATR0751G116 Amborella trichopoda HOM05D006736 ORTHO05D008459 1.5e-09 66.6 69 53.6
Gohir.A01G093700 Gossypium hirsutum HOM05D006736 ORTHO05D008459 1.5e-09 66.6 76 44.7
Hma1.2p1_0599F.1_g186970 Hydrangea macrophylla HOM05D006736 ORTHO05D008459 2.5e-09 65.9 83 45.8
Peaxi162Scf00047g02119 Petunia axillaris HOM05D006736 ORTHO05D008459 2.5e-09 65.9 55 63.6
Phvul.008G281200 Phaseolus vulgaris HOM05D006736 ORTHO05D008459 3.3e-09 65.5 79 46.8
Gohir.D01G078200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 4.3e-09 65.1 76 44.7
Gorai.002G102800 Gossypium raimondii HOM05D006736 ORTHO05D008459 4.3e-09 65.1 76 44.7
ECA234G2793 Erigeron canadensis HOM05D006736 ORTHO05D008459 7.4e-09 64.3 77 48.1
Gohir.A13G130900 Gossypium hirsutum HOM05D006736 ORTHO05D008459 1.6e-08 63.2 74 47.3
CARHR269350 Cardamine hirsuta HOM05D006736 ORTHO05D008459 2.8e-08 62.4 51 58.8
Thhalv10015819m.g Eutrema salsugineum HOM05D006736 ORTHO05D008459 3.7e-08 62.0 38 68.4
Solyc12g006220.3 Solanum lycopersicum HOM05D006736 ORTHO05D008459 3.7e-08 62.0 58 58.6
Sopen12g002170 Solanum pennellii HOM05D006736 ORTHO05D008459 3.7e-08 62.0 58 58.6
LjContig00081g0022969 Lotus japonicus HOM05D006736 ORTHO05D008459 6.2e-08 61.2 74 43.2
MBI14_g39127_MAGBIO Magnolia biondii HOM05D006736 ORTHO05D008459 6.2e-08 61.2 64 50.0
AT5G55980 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 8.1e-08 60.8 53 54.7
BcaB01g04378 Brassica carinata HOM05D006736 ORTHO05D008459 8.1e-08 60.8 38 65.8
BcaC04g20175 Brassica carinata HOM05D006736 ORTHO05D008459 8.1e-08 60.8 53 54.7
C09p46970 Brassica napus HOM05D006736 ORTHO05D008459 8.1e-08 60.8 53 54.7
BolC9t57545H Brassica oleracea HOM05D006736 ORTHO05D008459 8.1e-08 60.8 53 54.7
Lsat_1_v5_gn_5_122340 Lactuca sativa HOM05D006736 ORTHO05D008459 8.1e-08 60.8 75 44.0
MD03G1035000 Malus domestica HOM05D006736 ORTHO05D008459 8.1e-08 60.8 64 57.8
Peaxi162Scf01164g00020 Petunia axillaris HOM05D006736 ORTHO05D008459 8.1e-08 60.8 53 58.5
A10p13210 Brassica napus HOM05D006736 ORTHO05D008459 1.1e-07 60.5 36 72.2
BraA10t43419Z Brassica rapa HOM05D006736 ORTHO05D008459 1.1e-07 60.5 36 72.2
arahy.Tifrunner.gnm1.ann1.FR49Y0 Arachis hypogaea HOM05D006736 ORTHO05D008459 1.4e-07 60.1 51 64.7
arahy.Tifrunner.gnm1.ann1.P4RFEM Arachis hypogaea HOM05D006736 ORTHO05D008459 1.4e-07 60.1 51 64.7
CARHR087850 Cardamine hirsuta HOM05D006736 ORTHO05D008459 1.4e-07 60.1 56 57.1
CiPaw.06G067400 Carya illinoinensis HOM05D007247 ORTHO05D009208 1.4e-07 60.1 68 48.5
Sp6g17830 Schrenkiella parvula HOM05D006736 ORTHO05D008459 1.4e-07 60.1 53 54.7
Atru.chr11.2143 Acer truncatum HOM05D007247 ORTHO05D009208 3.1e-07 58.9 65 43.1
Haze_12254 Corylus avellana HOM05D007247 ORTHO05D009208 3.1e-07 58.9 46 60.9
DCAR_008749 Daucus carota HOM05D006736 ORTHO05D008459 3.1e-07 58.9 69 44.9
Gohir.D13G134200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 3.1e-07 58.9 49 61.2
Gorai.013G150500 Gossypium raimondii HOM05D006736 ORTHO05D008459 3.1e-07 58.9 49 61.2
Aa31LG3G11890 Aethionema arabicum HOM05D006736 ORTHO05D008459 4.0e-07 58.5 47 59.6
CSS0024852 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 4.0e-07 58.5 58 56.9
CSS0048788 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 4.0e-07 58.5 58 56.9
Carub.0008s1632 Capsella rubella HOM05D006736 ORTHO05D008459 4.0e-07 58.5 41 68.3
BcaB08g35964 Brassica carinata HOM05D006736 ORTHO05D008459 5.3e-07 58.2 53 54.7
Migut.M00067 Erythranthe guttata HOM05D006736 ORTHO05D008459 5.3e-07 58.2 56 55.4
AL8G31560 Arabidopsis lyrata HOM05D006736 ORTHO05D008459 6.9e-07 57.8 62 48.4
AT3G13227 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 6.9e-07 57.8 52 59.6
Migut.H01277 Erythranthe guttata HOM05D006736 ORTHO05D008459 6.9e-07 57.8 68 52.9
Thhalv10021795m.g Eutrema salsugineum HOM05D006736 ORTHO05D008459 6.9e-07 57.8 45 66.7
Sp3g11420 Schrenkiella parvula HOM05D006736 ORTHO05D008459 6.9e-07 57.8 52 61.5
Cfa009218 Carpinus fangiana HOM05D007247 ORTHO05D009208 1.2e-06 57.0 46 58.7
HanXRQChr03g0080371 Helianthus annuus HOM05D007247 ORTHO05D009208 1.2e-06 57.0 50 54.0
QL03p057801 Quercus lobata HOM05D007247 ORTHO05D009208 1.2e-06 57.0 49 59.2
PGR083G0815 Punica granatum HOM05D006736 ORTHO05D008459 1.5e-06 56.6 90 42.2
Carub.0003s1260 Capsella rubella HOM05D006736 ORTHO05D008459 2.0e-06 56.2 44 65.9
SGA_v2.0_scaffold73G24482 Striga asiatica HOM05D002257 ORTHO05D002417 2.0e-06 56.2 57 57.9
BcaC05g29199 Brassica carinata HOM05D006736 ORTHO05D008459 2.6e-06 55.8 44 65.9
BolC5t34141H Brassica oleracea HOM05D006736 ORTHO05D008459 2.6e-06 55.8 44 65.9
AL3G25020 Arabidopsis lyrata HOM05D006736 ORTHO05D008459 3.4e-06 55.5 51 58.8
Oeu019702.1 Olea europaea HOM05D006736 ORTHO05D008459 3.4e-06 55.5 66 43.9
BcaB06g25478 Brassica carinata HOM05D006736 ORTHO05D008459 4.5e-06 55.1 75 46.7
Eucgr.H02494 Eucalyptus grandis HOM05D007247 ORTHO05D009208 4.5e-06 55.1 55 49.1
BcaB04g18747 Brassica carinata HOM05D006736 ORTHO05D008459 5.8e-06 54.7 45 62.2
BcaC01g04005 Brassica carinata HOM05D006736 ORTHO05D008459 5.8e-06 54.7 45 62.2
A03p38090 Brassica napus HOM05D006736 ORTHO05D008459 5.8e-06 54.7 45 62.2
C03p46220 Brassica napus HOM05D006736 ORTHO05D008459 5.8e-06 54.7 45 62.2
BolC3t16893H Brassica oleracea HOM05D006736 ORTHO05D008459 5.8e-06 54.7 45 62.2
BraA03t12962Z Brassica rapa HOM05D006736 ORTHO05D008459 5.8e-06 54.7 45 62.2
Aa31LG8G450 Aethionema arabicum HOM05D006736 ORTHO05D008459 1.0e-05 53.9 77 46.8
ECA236G2479 Erigeron canadensis HOM05D006736 ORTHO05D008459 1.0e-05 53.9 39 59.0
GSVIVG01005747001 Vitis vinifera HOM05D000233 ORTHO05D000020 1.0e-05 53.9 40 62.5


User provided reference genes

Program Settings