Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024947.2 Cucumis melo HOM05D004836 ORTHO05D005150 0.0e+00 2858.9 1596 100.0
CsaV3_7G011380 Cucumis sativus L. HOM05D004836 ORTHO05D005150 0.0e+00 2506.9 1600 86.6
ClCG09G021380 Citrullus lanatus HOM05D004836 ORTHO05D005150 0.0e+00 2093.2 1545 79.8
Sed0002835 Sechium edule HOM05D004836 ORTHO05D005150 0.0e+00 1654.4 1778 59.4
Sed0003689 Sechium edule HOM05D004836 ORTHO05D005150 0.0e+00 1135.6 1322 58.2
Haze_09829 Corylus avellana HOM05D004836 ORTHO05D005150 4.0e-131 474.2 1868 32.4
CiPaw.11G204300 Carya illinoinensis HOM05D004836 ORTHO05D005150 5.6e-125 453.8 1879 30.3
QL08p004015 Quercus lobata HOM05D004836 ORTHO05D005150 8.4e-121 439.9 1825 32.9
MD11G1029700 Malus domestica HOM05D004836 ORTHO05D005150 3.6e-111 407.9 1902 30.2
MD03G1024600 Malus domestica HOM05D004836 ORTHO05D005150 1.8e-110 405.6 1871 29.8
Thecc.07G013200 Theobroma cacao HOM05D004836 ORTHO05D005150 9.7e-101 373.2 1830 30.7
Dinv10337 Davidia involucrata HOM05D004836 ORTHO05D005150 2.4e-99 368.6 1746 31.0
Dinv40862 Davidia involucrata HOM05D004836 ORTHO05D005150 7.7e-98 363.6 1653 30.4
Prupe.7G022200 Prunus persica HOM05D004836 ORTHO05D005150 9.4e-96 356.7 1815 30.5
Prupe.5G032900 Prunus persica HOM05D004836 ORTHO05D005150 1.4e-94 352.8 1828 30.1
Manes.03G141700 Manihot esculenta HOM05D004836 ORTHO05D005150 1.5e-93 349.4 1692 30.7
TWI38G0981 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 1.3e-92 346.3 1705 31.4
Atru.chr2.3693 Acer truncatum HOM05D004836 ORTHO05D005150 2.2e-92 345.5 1667 28.6
Duzib213G0869 Durio zibethinus HOM05D004836 ORTHO05D005150 3.5e-90 338.2 1861 29.0
RcHm_v2.0_Chr1g0333641 Rosa chinensis HOM05D004836 ORTHO05D005150 2.9e-89 335.1 1810 28.9
Potri.001G368200 Populus trichocarpa HOM05D004836 ORTHO05D005150 3.8e-89 334.7 1693 30.6
PGR083G2228 Punica granatum HOM05D004836 ORTHO05D005150 3.0e-86 325.1 1709 28.6
Gohir.D01G061900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 5.2e-86 324.3 1870 28.6
GSVIVG01014692001 Vitis vinifera HOM05D004836 ORTHO05D005150 1.5e-85 322.8 1831 30.5
Gorai.002G100500 Gossypium raimondii HOM05D004836 ORTHO05D005150 2.6e-85 322.0 865 39.9
Sabra16G0241300 Salix brachista HOM05D004836 ORTHO05D005150 3.2e-80 305.1 1923 29.0
CANSAT11G1576 Cannabis sativa HOM05D004836 ORTHO05D005150 1.6e-79 302.8 831 38.7
Ciclev10007227m.g Citrus clementina HOM05D004836 ORTHO05D005150 6.1e-79 300.8 688 45.1
FvH4_7g06090 Fragaria vesca HOM05D004836 ORTHO05D005150 8.8e-78 297.0 1860 28.1
TAR626G1210 Trochodendron aralioides HOM05D004836 ORTHO05D005150 1.5e-77 296.2 1775 28.8
Gohir.A01G091700 Gossypium hirsutum HOM05D004836 ORTHO05D005150 3.4e-77 295.0 1257 31.5
Gohir.A13G132500 Gossypium hirsutum HOM05D004836 ORTHO05D005150 8.3e-76 290.4 1811 29.2
FAN10G2990 Fragaria x ananassa HOM05D004836 ORTHO05D005150 1.8e-75 289.3 1852 26.9
CANSAT35G0529 Cannabis sativa HOM05D004836 ORTHO05D005150 2.7e-74 285.4 679 37.4
FAN06G1091 Fragaria x ananassa HOM05D004836 ORTHO05D005150 2.7e-74 285.4 1845 28.1
Actinidia37154 Actinidia chinensis HOM05D004836 ORTHO05D005150 5.9e-74 284.3 1665 28.3
Gorai.013G152400 Gossypium raimondii HOM05D004836 ORTHO05D005150 5.9e-74 284.3 1830 29.5
FAN01G1635 Fragaria x ananassa HOM05D004836 ORTHO05D005150 2.9e-73 282.0 1856 27.4
Manes.15G059500 Manihot esculenta HOM05D004836 ORTHO05D005150 5.0e-73 281.2 1643 28.7
FAN03G2987 Fragaria x ananassa HOM05D004836 ORTHO05D005150 8.6e-73 280.4 660 40.3
Gohir.D13G135900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 1.6e-71 276.2 676 42.9
CSS0029600 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 2.1e-71 275.8 1643 28.5
TAR624G0729 Trochodendron aralioides HOM05D004836 ORTHO05D005150 1.2e-69 270.0 1760 27.3
Cc05_g14960 Coffea canephora HOM05D004836 ORTHO05D005150 1.3e-68 266.5 1710 27.5
Glyma.10G277400 Glycine max HOM05D004836 ORTHO05D005150 2.2e-68 265.8 1743 28.5
Rhsim06G0230000 Rhododendron simsii HOM05D004836 ORTHO05D005150 2.0e-66 259.2 671 39.3
Phvul.003G265300 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 7.8e-66 257.3 1666 28.3
Glyma.20G112200 Glycine max HOM05D004836 ORTHO05D005150 1.3e-65 256.5 1768 27.9
Actinidia05002 Actinidia chinensis HOM05D004836 ORTHO05D005150 8.6e-65 253.8 1843 27.1
COL.COLO4_09837 Corchorus olitorius HOM05D004836 ORTHO05D005150 7.3e-64 250.8 1673 25.4
Lalb_Chr21g0309081 Lupinus albus HOM05D004836 ORTHO05D005150 2.8e-63 248.8 1739 27.4
arahy.Tifrunner.gnm1.ann1.LI7RG4 Arachis hypogaea HOM05D004836 ORTHO05D005150 3.0e-62 245.4 1758 29.4
Lj5g0000015 Lotus japonicus HOM05D004836 ORTHO05D005150 5.2e-62 244.6 1722 27.2
Ca_25650_v3 Cicer arietinum L. HOM05D004836 ORTHO05D005150 6.8e-62 244.2 1676 28.5
THA.LOC104811669 Tarenaya hassleriana HOM05D004836 ORTHO05D005150 2.0e-61 242.7 1955 27.5
TPR.G26309 Trifolium pratense HOM05D004836 ORTHO05D005150 1.1e-59 236.9 1449 26.5
Nitab4.5_0002736g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 4.1e-59 235.0 662 39.6
CSS0003147 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 5.4e-59 234.6 350 45.4
Eucgr.F02046 Eucalyptus grandis HOM05D004836 ORTHO05D005150 2.7e-58 232.3 626 37.5
PGSC0003DMG400022276 Solanum tuberosum HOM05D004836 ORTHO05D005150 7.8e-58 230.7 727 36.6
MD00G1168400 Malus domestica HOM05D004836 ORTHO05D005150 1.1e-56 226.9 519 46.1
Nitab4.5_0007415g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 1.5e-56 226.5 686 37.5
VMungo0720G3177 Vigna mungo HOM05D004836 ORTHO05D005150 1.9e-56 226.1 1681 27.2
Phvul.007G023800 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 4.3e-56 224.9 1747 27.4
Sopen07g033810 Solanum pennellii HOM05D004836 ORTHO05D005150 3.6e-55 221.9 653 37.7
Oeu014362.2 Olea europaea HOM05D004836 ORTHO05D005150 8.0e-55 220.7 1834 26.6
CAN.G623.12 Capsicum annuum HOM05D004836 ORTHO05D005150 1.1e-54 220.3 655 37.3
Solyc07g065600.3 Solanum lycopersicum HOM05D004836 ORTHO05D005150 1.1e-54 220.3 653 37.8
Cpa.g.sc12.114 Carica papaya HOM05D004836 ORTHO05D005150 1.8e-54 219.5 625 32.5
TWI39G0854 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 3.1e-54 218.8 464 44.6
Medtr1g111660 Medicago truncatula HOM05D004836 ORTHO05D005150 5.2e-54 218.0 1704 25.9
Migut.M01650 Erythranthe guttata HOM05D004836 ORTHO05D005150 6.8e-54 217.6 680 38.5
arahy.Tifrunner.gnm1.ann1.D5NCPP Arachis hypogaea HOM05D004836 ORTHO05D005150 8.9e-54 217.2 1493 25.3
Peaxi162Scf00139g01321 Petunia axillaris HOM05D004836 ORTHO05D005150 2.0e-53 216.1 1850 27.2
Lalb_Chr06g0166281 Lupinus albus HOM05D004836 ORTHO05D005150 6.4e-52 211.1 1742 26.9
Sc16g0008100 Simmondsia chinensis HOM05D004836 ORTHO05D005150 3.2e-51 208.8 1772 25.2
Carub.0008s1617 Capsella rubella HOM05D004836 ORTHO05D005150 5.4e-51 208.0 1806 28.6
AL8G31380 Arabidopsis lyrata HOM05D004836 ORTHO05D005150 3.0e-49 202.2 1831 27.9
Sp6g17700 Schrenkiella parvula HOM05D004836 ORTHO05D005150 3.3e-48 198.7 653 40.1
MD11G1030200 Malus domestica HOM05D004836 ORTHO05D005150 9.5e-48 197.2 461 47.9
Aa31LG3G11720 Aethionema arabicum HOM05D004836 ORTHO05D005150 1.6e-47 196.4 698 40.5
Oeu046935.1 Olea europaea HOM05D004836 ORTHO05D005150 3.6e-47 195.3 451 36.8
Psat6g230520 Pisum sativum HOM05D004836 ORTHO05D005150 1.8e-46 193.0 1708 25.8
CARHR269190 Cardamine hirsuta HOM05D004836 ORTHO05D005150 2.2e-44 186.0 649 40.1
AT5G55820 Arabidopsis thaliana HOM05D004836 ORTHO05D005150 2.4e-43 182.6 1812 27.4
SGA_v2.0_scaffold168G38564 Striga asiatica HOM05D004836 ORTHO05D005150 7.1e-43 181.0 1699 25.8
Lsat_1_v5_gn_9_90560 Lactuca sativa HOM05D004836 ORTHO05D005150 1.2e-42 180.3 1668 25.3
Thhalv10012421m.g Eutrema salsugineum HOM05D004836 ORTHO05D005150 3.5e-42 178.7 1758 27.6
Sc03g0011420 Simmondsia chinensis HOM05D004836 ORTHO05D005150 3.5e-42 178.7 1811 25.5
MBI15_g03895_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 1.3e-41 176.8 1490 24.6
Nn1g03169 Nelumbo nucifera HOM05D004836 ORTHO05D005150 1.5e-40 173.3 1761 26.1
AUR62036461 Chenopodium quinoa HOM05D004836 ORTHO05D005150 9.5e-40 170.6 622 29.7
Sc03g0011330 Simmondsia chinensis HOM05D004836 ORTHO05D005150 1.2e-39 170.2 1815 25.5
SGA_v2.0_scaffold171G38861 Striga asiatica HOM05D004836 ORTHO05D005150 8.1e-39 167.5 1800 25.6
AUR62017108 Chenopodium quinoa HOM05D004836 ORTHO05D005150 3.1e-38 165.6 616 27.9
A03p13800 Brassica napus HOM05D004836 ORTHO05D005150 4.0e-38 165.2 401 35.9
BraA03t10683Z Brassica rapa HOM05D004836 ORTHO05D005150 4.0e-38 165.2 401 35.9
HanXRQChr13g0408421 Helianthus annuus HOM05D004836 ORTHO05D005150 3.4e-37 162.2 1679 25.2
Hund20644 Selenicereus undatus HOM05D004836 ORTHO05D005150 1.3e-36 160.2 646 35.8
EL10Ac4g07562 Beta vulgaris HOM05D004836 ORTHO05D005150 3.8e-36 158.7 663 35.9
HanXRQChr03g0074011 Helianthus annuus HOM05D004836 ORTHO05D005150 3.8e-36 158.7 666 31.5
C03p16240 Brassica napus HOM05D004836 ORTHO05D005150 4.2e-35 155.2 644 37.0
Hund23108 Selenicereus undatus HOM05D004836 ORTHO05D005150 4.2e-35 155.2 1756 26.3
BolC3t14046H Brassica oleracea HOM05D004836 ORTHO05D005150 5.4e-35 154.8 644 36.8
Rhsim04G0012500 Rhododendron simsii HOM05D004836 ORTHO05D005150 2.7e-34 152.5 1430 24.5
Aqoxy4G02292 Aquilegia oxysepala HOM05D004836 ORTHO05D005150 1.2e-31 143.7 665 35.6
vmacro11592 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 2.1e-31 142.9 307 35.5
DCAR_013235 Daucus carota HOM05D004836 ORTHO05D005150 3.4e-29 135.6 1821 23.2
ECA240G1942 Erigeron canadensis HOM05D004836 ORTHO05D000368 3.4e-29 135.6 643 34.7
Ah.06g181450 Amaranthus hybridus HOM05D004836 ORTHO05D005150 1.3e-28 133.7 1731 23.6
Hma1.2p1_1109F.1_g258180 Hydrangea macrophylla HOM05D004836 ORTHO05D005150 3.8e-28 132.1 286 34.3
TWI39G0173 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 1.0e-25 124.0 289 36.7
Lj1A890T52 Lonicera japonica HOM05D004836 ORTHO05D005150 3.9e-25 122.1 365 34.5
AUR62006337 Chenopodium quinoa HOM05D004836 ORTHO05D005150 4.8e-23 115.2 514 27.6
CDE04G0223 Ceratophyllum demersum HOM05D000588 ORTHO05D005150 1.8e-22 113.2 637 34.1
arahy.Tifrunner.gnm1.ann1.TB163P Arachis hypogaea HOM05D004836 ORTHO05D005150 2.4e-22 112.8 307 31.6
AUR62044127 Chenopodium quinoa HOM05D004836 ORTHO05D005150 4.3e-16 92.0 235 34.5
Psat2g132080 Pisum sativum HOM05D004836 ORTHO05D005150 9.6e-16 90.9 184 34.2
MD03G1025800 Malus domestica HOM05D004836 ORTHO05D005150 1.6e-15 90.1 85 62.4
BcaB08g35941 Brassica carinata HOM05D004836 ORTHO05D005150 4.8e-15 88.6 369 30.6
PSO675G3612 Papaver somniferum HOM05D004836 ORTHO05D005150 4.5e-13 82.0 243 30.5
vmacro11593 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 1.3e-12 80.5 271 42.1
BcaB08g35940 Brassica carinata HOM05D004836 ORTHO05D005150 4.9e-12 78.6 403 26.8
Cpa.g.c38368 Carica papaya HOM05D004836 ORTHO05D005150 8.4e-12 77.8 48 72.9
TWI39G0060 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 1.1e-11 77.4 90 43.3
MD00G1168200 Malus domestica HOM05D004836 ORTHO05D005150 3.2e-11 75.9 142 40.1
Actinidia30401 Actinidia chinensis HOM05D004836 ORTHO05D005150 5.5e-11 75.1 62 59.7
BcaC01g06394 Brassica carinata HOM05D004836 ORTHO05D005150 9.3e-11 74.3 74 52.7
PSO541G5284 Papaver somniferum HOM05D004836 ORTHO05D005150 2.7e-10 72.8 464 25.2
HanXRQChr03g0074021 Helianthus annuus HOM05D004836 ORTHO05D005150 4.6e-10 72.0 56 62.5
HPP92_018201 Vanilla planifolia HOM05D004836 ORTHO05D005150 6.0e-10 71.6 687 24.7
Actinidia30399 Actinidia chinensis HOM05D004836 ORTHO05D005150 7.9e-10 71.2 109 38.5
ATR0751G141 Amborella trichopoda HOM05D004836 ORTHO05D005150 3.0e-09 69.3 629 29.7
TPR.G26295 Trifolium pratense HOM05D004836 ORTHO05D005150 5.1e-09 68.6 158 34.2
SEGI_04158 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 1.5e-08 67.0 253 32.0
unitig_22.g5946 Utricularia gibba HOM05D004836 ORTHO05D005150 1.9e-08 66.6 45 64.4
Os09g0477700 Oryza sativa ssp. japonica HOM05D028105 ORTHO05D005150 7.4e-08 64.7 418 25.8
CDE02G2584 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 2.1e-07 63.2 53 67.9
RhsimUnG0156400 Rhododendron simsii HOM05D000074 ORTHO05D001262 2.1e-07 63.2 54 55.6
SEGI_26437 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 2.8e-07 62.8 295 29.2
Pp3c1_42830 Physcomitrium patens HOM05D014698 ORTHO05D016532 3.7e-07 62.4 69 58.0
CDE02G4444 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 1.8e-06 60.1 82 41.5
Zm00001eb316050 Zea mays HOM05D028105 ORTHO05D005150 4.0e-06 58.9 513 31.4


User provided reference genes

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