Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024930.2 Cucumis melo HOM05D005924 ORTHO05D007290 6.3e-73 277.3 138 100.0
CsaV3_7G015090 Cucumis sativus L. HOM05D005924 ORTHO05D007290 6.5e-70 267.3 138 96.4
ClCG09G021250 Citrullus lanatus HOM05D005924 ORTHO05D007290 3.9e-67 258.1 138 92.0
Sed0014433 Sechium edule HOM05D005924 ORTHO05D007290 1.1e-61 240.0 139 87.1
Sed0006731 Sechium edule HOM05D005924 ORTHO05D007290 2.8e-57 225.3 139 81.3
MD03G1184300 Malus domestica HOM05D005924 ORTHO05D007290 1.5e-45 186.4 141 69.5
MD11G1201100 Malus domestica HOM05D005924 ORTHO05D007290 9.4e-45 183.7 141 69.5
Prupe.4G242300 Prunus persica HOM05D005924 ORTHO05D007290 6.1e-44 181.0 142 66.9
CSS0023895 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 8.0e-44 180.6 139 65.5
COL.COLO4_09820 Corchorus olitorius HOM05D005924 ORTHO05D007290 8.0e-44 180.6 142 65.5
QL08p004337 Quercus lobata HOM05D005924 ORTHO05D007290 1.0e-43 180.3 141 68.1
Actinidia30411 Actinidia chinensis HOM05D005924 ORTHO05D007290 1.8e-43 179.5 141 63.8
Haze_09815 Corylus avellana HOM05D005924 ORTHO05D007290 1.8e-43 179.5 140 69.3
QL11p054318 Quercus lobata HOM05D005924 ORTHO05D007290 3.0e-43 178.7 141 67.4
Duzib213G0633 Durio zibethinus HOM05D005924 ORTHO05D007290 4.0e-43 178.3 141 66.0
TWI39G1162 Tripterygium wilfordii HOM05D005924 ORTHO05D007290 5.2e-43 177.9 145 66.2
Dinv10325 Davidia involucrata HOM05D005924 ORTHO05D007290 1.5e-42 176.4 143 65.7
CiPaw.11G203100 Carya illinoinensis HOM05D005924 ORTHO05D007290 4.4e-42 174.9 140 67.9
FvH4_3g29370 Fragaria vesca HOM05D005924 ORTHO05D007290 5.7e-42 174.5 143 63.6
FAN11G0697 Fragaria x ananassa HOM05D005924 ORTHO05D007290 5.7e-42 174.5 143 63.6
CiPaw.12G137600 Carya illinoinensis HOM05D005924 ORTHO05D007290 7.5e-42 174.1 141 66.7
TAR629G1982 Trochodendron aralioides HOM05D001060 ORTHO05D000905 1.3e-41 173.3 140 62.9
FAN21G3132 Fragaria x ananassa HOM05D005924 ORTHO05D007290 1.7e-41 172.9 143 63.6
FAN25G0770 Fragaria x ananassa HOM05D005924 ORTHO05D007290 1.7e-41 172.9 140 65.0
Thecc.07G014800 Theobroma cacao HOM05D005924 ORTHO05D007290 2.2e-41 172.6 141 63.8
Cfa020200 Carpinus fangiana HOM05D005924 ORTHO05D007290 3.7e-41 171.8 141 67.4
arahy.Tifrunner.gnm1.ann1.7P25LN Arachis hypogaea HOM05D005924 ORTHO05D007290 4.8e-41 171.4 141 63.8
arahy.Tifrunner.gnm1.ann1.RJW0MD Arachis hypogaea HOM05D005924 ORTHO05D007290 4.8e-41 171.4 141 63.8
Ciclev10009817m.g Citrus clementina HOM05D005924 ORTHO05D007290 4.8e-41 171.4 142 65.5
RcHm_v2.0_Chr5g0053761 Rosa chinensis HOM05D005924 ORTHO05D007290 1.1e-40 170.2 146 62.3
GSVIVG01014668001 Vitis vinifera HOM05D005924 ORTHO05D007290 1.4e-40 169.9 140 63.6
Psat2g007680 Pisum sativum HOM05D000001 ORTHO05D000003 1.8e-40 169.5 143 65.0
Cpa.g.sc12.154 Carica papaya HOM05D005924 ORTHO05D007290 3.1e-40 168.7 123 70.7
TWI38G0037 Tripterygium wilfordii HOM05D005924 ORTHO05D007290 5.4e-40 167.9 147 62.6
Manes.15G060600 Manihot esculenta HOM05D005924 ORTHO05D007290 9.1e-40 167.2 129 70.5
Sabra16G0240500 Salix brachista HOM05D005924 ORTHO05D007290 1.2e-39 166.8 128 67.2
Hma1.2p1_0036F.1_g022440 Hydrangea macrophylla HOM05D005924 ORTHO05D007290 1.6e-39 166.4 139 63.3
Hund23125 Selenicereus undatus HOM05D005924 ORTHO05D007290 1.6e-39 166.4 138 61.6
Ca_06392_v3 Cicer arietinum L. HOM05D005924 ORTHO05D007290 2.0e-39 166.0 142 61.3
Phvul.008G278700 Phaseolus vulgaris HOM05D005924 ORTHO05D007290 2.7e-39 165.6 139 63.3
Lj6g0020710 Lotus japonicus HOM05D005924 ORTHO05D007290 5.9e-39 164.5 139 64.7
Medtr5g095700 Medicago truncatula HOM05D005924 ORTHO05D007290 7.7e-39 164.1 143 60.8
TPR.G8617 Trifolium pratense HOM05D005924 ORTHO05D007290 7.7e-39 164.1 143 64.3
Dinv40851 Davidia involucrata HOM05D005924 ORTHO05D007290 1.0e-38 163.7 140 64.3
Eucgr.F02053 Eucalyptus grandis HOM05D005924 ORTHO05D007290 1.0e-38 163.7 128 68.8
Gohir.A04G006200 Gossypium hirsutum HOM05D005924 ORTHO05D007290 1.0e-38 163.7 128 67.2
Oeu057095.1 Olea europaea HOM05D005924 ORTHO05D007290 1.7e-38 162.9 140 63.6
CANSAT11G0122 Cannabis sativa HOM05D005924 ORTHO05D007290 2.9e-38 162.2 149 63.8
Potri.001G367200 Populus trichocarpa HOM05D005924 ORTHO05D007290 3.8e-38 161.8 128 65.6
ECA246G3128 Erigeron canadensis HOM05D005924 ORTHO05D007290 5.0e-38 161.4 141 58.2
Lsat_1_v5_gn_5_1420 Lactuca sativa HOM05D005924 ORTHO05D007290 6.5e-38 161.0 143 61.5
HanXRQChr08g0231191 Helianthus annuus HOM05D005924 ORTHO05D007290 8.5e-38 160.6 139 61.2
CSS0025987 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 1.1e-37 160.2 143 59.4
CSS0049690 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 1.1e-37 160.2 143 59.4
Nn1g03196 Nelumbo nucifera HOM05D005924 ORTHO05D007290 2.5e-37 159.1 142 60.6
SGA_v2.0_scaffold8G04406 Striga asiatica HOM05D005924 ORTHO05D007290 7.2e-37 157.5 143 60.8
MSTRG.13019 Avicennia marina HOM05D005924 ORTHO05D007290 1.2e-36 156.8 140 60.7
AUR62036442 Chenopodium quinoa HOM05D005924 ORTHO05D007290 1.2e-36 156.8 140 60.7
Gohir.D05G383300 Gossypium hirsutum HOM05D005924 ORTHO05D007290 1.6e-36 156.4 128 64.8
Actinidia26779 Actinidia chinensis HOM05D005924 ORTHO05D007290 4.7e-36 154.8 139 59.0
VMungo0647G1823 Vigna mungo HOM05D005924 ORTHO05D007290 4.7e-36 154.8 139 61.2
AUR62036411 Chenopodium quinoa HOM05D005924 ORTHO05D007290 6.1e-36 154.5 140 60.7
Rhsim04G0012900 Rhododendron simsii HOM05D005924 ORTHO05D007290 6.1e-36 154.5 141 57.4
Cc05_g14880 Coffea canephora HOM05D005924 ORTHO05D007290 8.0e-36 154.1 139 60.4
Lalb_Chr04g0247881 Lupinus albus HOM05D005924 ORTHO05D007290 1.0e-35 153.7 145 62.8
MBI19_g12833_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 1.4e-35 153.3 143 60.8
Aqoxy1G04252 Aquilegia oxysepala HOM05D005924 ORTHO05D007290 3.0e-35 152.1 142 59.9
AUR62017085 Chenopodium quinoa HOM05D005924 ORTHO05D007290 3.0e-35 152.1 139 60.4
Glyma.02G300000 Glycine max HOM05D005924 ORTHO05D007290 8.8e-35 150.6 127 61.4
Oeu049375.1 Olea europaea HOM05D005924 ORTHO05D007290 1.2e-34 150.2 140 59.3
Thhalv10014966m.g Eutrema salsugineum HOM05D005924 ORTHO05D007290 1.5e-34 149.8 141 61.0
Lj8A178T78 Lonicera japonica HOM05D005924 ORTHO05D007290 1.5e-34 149.8 126 63.5
vmacro09651 Vaccinium macrocarpon HOM05D005924 ORTHO05D007290 2.6e-34 149.1 140 55.7
Glyma.14G013900 Glycine max HOM05D005924 ORTHO05D007290 3.4e-34 148.7 139 57.6
Gorai.009G449900 Gossypium raimondii HOM05D005924 ORTHO05D007290 3.4e-34 148.7 136 60.3
EL10Ac4g07594 Beta vulgaris HOM05D005924 ORTHO05D007290 5.7e-34 147.9 141 59.6
CDE10G1343 Ceratophyllum demersum HOM05D005924 ORTHO05D007290 5.7e-34 147.9 139 56.8
PGR083G1797 Punica granatum HOM05D005924 ORTHO05D007290 7.5e-34 147.5 142 59.9
Sp6g17560 Schrenkiella parvula HOM05D005924 ORTHO05D007290 1.3e-33 146.7 127 63.8
Actinidia37157 Actinidia chinensis HOM05D005924 ORTHO05D007290 4.9e-33 144.8 121 62.0
ATR0624G098 Amborella trichopoda HOM05D005924 ORTHO05D007290 4.9e-33 144.8 141 54.6
MBI16_g07767_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 3.1e-32 142.1 124 65.3
CDE10G1040 Ceratophyllum demersum HOM05D005924 ORTHO05D007290 4.1e-32 141.7 139 54.0
Sc16g0008020 Simmondsia chinensis HOM05D005924 ORTHO05D007290 4.1e-32 141.7 140 56.4
AL8G31220 Arabidopsis lyrata HOM05D005924 ORTHO05D007290 5.4e-32 141.4 142 57.0
Carub.0008s1601 Capsella rubella HOM05D005924 ORTHO05D007290 1.2e-31 140.2 144 58.3
PSO302G0279 Papaver somniferum HOM05D005924 ORTHO05D007290 1.6e-31 139.8 143 58.0
AT5G55640 Arabidopsis thaliana HOM05D005924 ORTHO05D007290 2.0e-31 139.4 145 57.2
Migut.H01759 Erythranthe guttata HOM05D005924 ORTHO05D007290 2.7e-31 139.0 143 58.0
Ah.06g181380 Amaranthus hybridus HOM05D000864 ORTHO05D002353 3.5e-31 138.7 121 60.3
unitig_0.g996 Utricularia gibba HOM05D005924 ORTHO05D007290 3.5e-31 138.7 130 55.4
Nitab4.5_0014607g0010 Nicotiana tabacum HOM05D005924 ORTHO05D007290 4.5e-31 138.3 143 58.7
Nitab4.5_0000461g0270 Nicotiana tabacum HOM05D005924 ORTHO05D007290 7.7e-31 137.5 143 58.7
DCAR_018844 Daucus carota HOM05D005924 ORTHO05D007290 1.3e-30 136.7 130 58.5
PSO210G6324 Papaver somniferum HOM05D005924 ORTHO05D007290 1.7e-30 136.3 143 56.6
THA.LOC104811656 Tarenaya hassleriana HOM05D005924 ORTHO05D007290 2.3e-30 136.0 145 57.2
BcaB08g35925 Brassica carinata HOM05D005924 ORTHO05D007290 2.9e-30 135.6 123 59.3
Oeu049390.1 Olea europaea HOM05D005924 ORTHO05D007290 6.6e-30 134.4 123 61.0
BcaC04g20212 Brassica carinata HOM05D005924 ORTHO05D007290 8.6e-30 134.0 126 56.3
C09p46620 Brassica napus HOM05D005924 ORTHO05D007290 8.6e-30 134.0 126 56.3
BolC9t57514H Brassica oleracea HOM05D005924 ORTHO05D007290 1.9e-29 132.9 125 54.4
PGSC0003DMG400022173 Solanum tuberosum HOM05D005924 ORTHO05D007290 1.9e-29 132.9 143 55.9
BraA10t43385Z Brassica rapa HOM05D005924 ORTHO05D007290 7.2e-29 131.0 132 57.6
Aa31LG3G11590 Aethionema arabicum HOM05D005924 ORTHO05D007290 1.2e-28 130.2 151 53.0
Solyc07g065480.3 Solanum lycopersicum HOM05D005924 ORTHO05D007290 1.2e-28 130.2 143 54.5
A10p12930 Brassica napus HOM05D005924 ORTHO05D007290 2.8e-28 129.0 132 57.6
CARHR268960 Cardamine hirsuta HOM05D005924 ORTHO05D007290 4.7e-28 128.3 124 59.7
Sopen07g033690 Solanum pennellii HOM05D005924 ORTHO05D007290 1.0e-27 127.1 143 53.1
Os03g0595200 Oryza sativa ssp. japonica HOM05D005924 ORTHO05D007290 2.6e-26 122.5 122 54.9
Peaxi162Scf01164g00127 Petunia axillaris HOM05D005924 ORTHO05D007290 9.8e-26 120.6 131 56.5
Atru.BG.148.p Acer truncatum HOM05D005924 ORTHO05D007290 3.7e-25 118.6 91 68.1
Manes.03G140800 Manihot esculenta HOM05D005924 ORTHO05D007290 6.3e-25 117.9 134 56.7
C09p47070 Brassica napus HOM05D005924 ORTHO05D007290 8.3e-25 117.5 121 55.4
QL08p004311 Quercus lobata HOM05D005924 ORTHO05D007290 1.1e-24 117.1 120 55.0
SEGI_16066 Sequoiadendron giganteum HOM05D005924 ORTHO05D007290 3.5e-23 112.1 145 49.0
Zm00001eb049780 Zea mays HOM05D005924 ORTHO05D007290 5.9e-23 111.3 132 50.8
BcaC04g20171 Brassica carinata HOM05D005924 ORTHO05D007290 1.0e-22 110.5 88 62.5
Mapoly0038s0106 Marchantia polymorpha HOM05D005924 ORTHO05D007290 6.6e-22 107.8 141 46.1
HPP92_006039 Vanilla planifolia HOM05D005924 ORTHO05D007290 5.6e-21 104.8 121 47.9
Pp3c5_24890 Physcomitrium patens HOM05D005924 ORTHO05D007290 2.8e-20 102.4 133 45.1
arahy.Tifrunner.gnm1.ann1.HJ67LJ Arachis hypogaea HOM05D005924 ORTHO05D007290 3.6e-20 102.1 97 58.8
Pp3c6_3770 Physcomitrium patens HOM05D005924 ORTHO05D007290 4.7e-20 101.7 134 41.8
TAR626G0711 Trochodendron aralioides HOM05D005924 ORTHO05D007290 1.0e-19 100.5 126 49.2
SMO145G0101 Selaginella moellendorffii HOM05D005924 ORTHO05D007290 2.6e-18 95.9 151 41.7
BolC9t57844H Brassica oleracea HOM05D005924 ORTHO05D007290 7.8e-15 84.3 101 51.5
BcaC04g19914 Brassica carinata HOM05D005924 ORTHO05D007290 3.0e-14 82.4 101 50.5
Os03g0412200 Oryza sativa ssp. japonica HOM05D005924 ORTHO05D007290 6.2e-12 74.7 108 44.4
arahy.Tifrunner.gnm1.ann1.7WZH36 Arachis hypogaea HOM05D005924 ORTHO05D007290 2.7e-07 59.3 53 50.9
TAR371G0507 Trochodendron aralioides HOM05D005924 ORTHO05D007290 2.7e-07 59.3 82 42.7
C09p49910 Brassica napus HOM05D005924 ORTHO05D007290 4.6e-07 58.5 42 64.3
Zm00001eb019850 Zea mays HOM05D005924 ORTHO05D007290 6.0e-07 58.2 98 39.8
CBR_g27765 Chara braunii HOM05D005924 ORTHO05D007290 1.7e-06 56.6 129 34.1
AagrBONN_evm.TU.Sc2ySwM_340.382 Anthoceros agrestis HOM05D005924 ORTHO05D007290 6.6e-06 54.7 138 31.9


User provided reference genes

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