Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024909.2 Cucumis melo HOM05D006454 ORTHO05D008024 9.4e-226 786.9 533 100.0
CsaV3_7G018450 Cucumis sativus L. HOM05D006454 ORTHO05D008024 1.7e-179 633.3 533 87.4
ClCG09G021120 Citrullus lanatus HOM05D006454 ORTHO05D008024 2.9e-166 589.3 531 83.4
Sed0021870 Sechium edule HOM05D006454 ORTHO05D008024 4.5e-143 512.3 557 74.5
FAN21G2064 Fragaria x ananassa HOM05D006454 ORTHO05D008024 1.8e-107 394.0 527 67.6
Haze_09788 Corylus avellana HOM05D006454 ORTHO05D008024 2.3e-107 393.7 523 67.1
MD11G1204700 Malus domestica HOM05D006454 ORTHO05D008024 5.2e-107 392.5 527 67.4
Cfa020229 Carpinus fangiana HOM05D006454 ORTHO05D008024 2.0e-106 390.6 528 66.5
FvH4_3g24060 Fragaria vesca HOM05D006454 ORTHO05D008024 2.8e-105 386.7 526 67.1
FAN11G0689 Fragaria x ananassa HOM05D006454 ORTHO05D008024 2.8e-105 386.7 526 67.1
FAN25G1123 Fragaria x ananassa HOM05D006454 ORTHO05D008024 2.4e-104 383.6 516 67.4
FAN25G3289 Fragaria x ananassa HOM05D006454 ORTHO05D008024 2.4e-104 383.6 527 66.6
Prupe.4G234400 Prunus persica HOM05D006454 ORTHO05D008024 2.4e-104 383.6 526 66.2
QL08p005504 Quercus lobata HOM05D006454 ORTHO05D008024 4.5e-103 379.4 534 64.6
RcHm_v2.0_Chr5g0042641 Rosa chinensis HOM05D006454 ORTHO05D008024 9.4e-101 371.7 526 66.2
TAR626G0559 Trochodendron aralioides HOM05D006454 ORTHO05D008024 6.1e-100 369.0 522 64.2
Thecc.07G022300 Theobroma cacao HOM05D006454 ORTHO05D008024 2.8e-97 360.1 540 63.5
Ciclev10008511m.g Citrus clementina HOM05D006454 ORTHO05D008024 1.4e-96 357.8 483 68.3
Carub.0008s1595 Capsella rubella HOM05D006454 ORTHO05D008024 5.9e-95 352.4 532 62.8
MD03G1188700 Malus domestica HOM05D006454 ORTHO05D008024 5.5e-93 345.9 530 63.8
ECA246G2030 Erigeron canadensis HOM05D006454 ORTHO05D008024 7.2e-93 345.5 517 60.7
Gohir.A13G134866 Gossypium hirsutum HOM05D006454 ORTHO05D008024 4.7e-92 342.8 520 63.5
AL8G31150 Arabidopsis lyrata HOM05D006454 ORTHO05D008024 1.0e-91 341.7 533 61.0
A03p13940 Brassica napus HOM05D006454 ORTHO05D008024 1.0e-91 341.7 486 64.8
C03p16380 Brassica napus HOM05D006454 ORTHO05D008024 1.0e-91 341.7 503 63.8
Gorai.013G155100 Gossypium raimondii HOM05D006454 ORTHO05D008024 1.0e-91 341.7 520 63.5
BcaC01g06383 Brassica carinata HOM05D006454 ORTHO05D008024 4.0e-91 339.7 503 63.6
BcaB01g04358 Brassica carinata HOM05D006454 ORTHO05D008024 5.2e-91 339.3 487 64.7
CANSAT11G2145 Cannabis sativa HOM05D006454 ORTHO05D008024 6.8e-91 339.0 520 63.7
BraA03t10695Z Brassica rapa HOM05D006454 ORTHO05D008024 1.5e-90 337.8 516 62.6
Gohir.D13G138500 Gossypium hirsutum HOM05D006454 ORTHO05D008024 2.0e-90 337.4 520 63.1
CiPaw.11G201000 Carya illinoinensis HOM05D006454 ORTHO05D008024 4.4e-90 336.3 385 77.9
Nitab4.5_0000163g0310 Nicotiana tabacum HOM05D006454 ORTHO05D008024 7.5e-90 335.5 499 63.9
Aa31LG3G11530 Aethionema arabicum HOM05D006454 ORTHO05D008024 9.8e-90 335.1 514 63.4
BolC3t14060H Brassica oleracea HOM05D006454 ORTHO05D008024 9.8e-90 335.1 503 63.4
Sp6g17500 Schrenkiella parvula HOM05D006454 ORTHO05D008024 2.8e-89 333.6 535 60.9
Atru.chr2.3605 Acer truncatum HOM05D006454 ORTHO05D008024 4.9e-89 332.8 496 66.5
DCAR_013215 Daucus carota HOM05D006454 ORTHO05D008024 1.8e-88 330.9 486 64.4
Aqoxy4G02215 Aquilegia oxysepala HOM05D006454 ORTHO05D008024 2.4e-88 330.5 498 64.1
SalBow8G0989 Salvia bowleyana HOM05D006454 ORTHO05D008024 2.0e-87 327.4 533 61.7
AT5G55580 Arabidopsis thaliana HOM05D006454 ORTHO05D008024 2.7e-87 327.0 533 60.8
MBI16_g11566_MAGBIO Magnolia biondii HOM05D006454 ORTHO05D008024 3.5e-87 326.6 517 61.9
Thhalv10013311m.g Eutrema salsugineum HOM05D006454 ORTHO05D008024 4.5e-87 326.2 490 52.9
HanXRQChr08g0235811 Helianthus annuus HOM05D006454 ORTHO05D008024 1.7e-86 324.3 484 61.8
Phvul.008G275700 Phaseolus vulgaris HOM05D006454 ORTHO05D008024 1.9e-85 320.9 535 59.8
CSS0002313 Camellia sinensis var. sinensis HOM05D006454 ORTHO05D000036 9.5e-85 318.5 490 62.0
THA.LOC104813444 Tarenaya hassleriana HOM05D006454 ORTHO05D008024 9.5e-85 318.5 497 63.0
Lalb_Chr04g0247971 Lupinus albus HOM05D006454 ORTHO05D008024 1.2e-84 318.2 484 63.4
Lj1A885G30 Lonicera japonica HOM05D006454 ORTHO05D008024 1.2e-82 311.6 426 69.5
Solyc12g015640.2 Solanum lycopersicum HOM05D006454 ORTHO05D008024 1.2e-82 311.6 477 64.2
CiPaw.12G136000 Carya illinoinensis HOM05D006454 ORTHO05D008024 1.5e-82 311.2 493 60.2
Potri.001G361800 Populus trichocarpa HOM05D006454 ORTHO05D008024 1.5e-82 311.2 537 59.2
Eucgr.F03524 Eucalyptus grandis HOM05D006454 ORTHO05D008024 4.4e-82 309.7 482 63.7
Manes.15G063200 Manihot esculenta HOM05D006454 ORTHO05D008024 4.4e-82 309.7 532 58.8
Nitab4.5_0002517g0040 Nicotiana tabacum HOM05D006454 ORTHO05D008024 2.9e-81 307.0 508 60.8
Sabra11G0073300 Salix brachista HOM05D006454 ORTHO05D008024 3.7e-81 306.6 488 64.1
TPR.G14154 Trifolium pratense HOM05D006454 ORTHO05D008024 4.9e-81 306.2 533 58.3
CARHR268890 Cardamine hirsuta HOM05D006454 ORTHO05D008024 6.3e-81 305.8 336 80.4
Medtr5g094610 Medicago truncatula HOM05D006454 ORTHO05D008024 6.3e-81 305.8 544 57.7
Ca_06374_v3 Cicer arietinum L. HOM05D006454 ORTHO05D000136 1.4e-80 304.7 416 67.5
Sabra11G0078800 Salix brachista HOM05D006454 ORTHO05D008024 1.8e-80 304.3 488 63.5
Migut.M01675 Erythranthe guttata HOM05D006454 ORTHO05D008024 4.1e-80 303.1 534 56.7
MSTRG.6985 Avicennia marina HOM05D006454 ORTHO05D008024 9.2e-80 302.0 514 59.7
LjContig00272g0005215 Lotus japonicus HOM05D006454 ORTHO05D008024 9.2e-80 302.0 529 60.5
Peaxi162Scf00955g00214 Petunia axillaris HOM05D006454 ORTHO05D008024 9.2e-80 302.0 490 62.9
PSO541G2941 Papaver somniferum HOM05D006454 ORTHO05D008024 1.2e-79 301.6 490 61.0
Actinidia05032 Actinidia chinensis HOM05D006454 ORTHO05D008024 2.7e-79 300.4 533 59.7
PSO675G2716 Papaver somniferum HOM05D006454 ORTHO05D008024 2.7e-79 300.4 493 61.1
TWI39G0040 Tripterygium wilfordii HOM05D006454 ORTHO05D008024 4.6e-79 299.7 519 60.5
Glyma.14G015800 Glycine max HOM05D006454 ORTHO05D008024 7.8e-79 298.9 538 57.6
Lsat_1_v5_gn_5_8060 Lactuca sativa HOM05D006454 ORTHO05D008024 7.8e-79 298.9 531 58.9
Cc05_g14700 Coffea canephora HOM05D006454 ORTHO05D008024 1.0e-78 298.5 531 58.8
arahy.Tifrunner.gnm1.ann1.AYWF3K Arachis hypogaea HOM05D006454 ORTHO05D008024 1.7e-78 297.7 470 61.9
CDE12G0728 Ceratophyllum demersum HOM05D006454 ORTHO05D008024 1.5e-77 294.7 488 61.9
Oeu054328.1 Olea europaea HOM05D006454 ORTHO05D008024 7.3e-77 292.4 521 57.4
Sopen12g007540 Solanum pennellii HOM05D006454 ORTHO05D008024 1.6e-76 291.2 481 62.0
arahy.Tifrunner.gnm1.ann1.IBL7LR Arachis hypogaea HOM05D006454 ORTHO05D008024 3.6e-76 290.0 468 62.0
VMungo0647G1066 Vigna mungo HOM05D006454 ORTHO05D008024 4.0e-75 286.6 531 57.6
CAN.G1239.14 Capsicum annuum HOM05D006454 ORTHO05D008024 6.8e-75 285.8 499 60.1
ATR1149G086 Amborella trichopoda HOM05D006454 ORTHO05D008024 3.4e-74 283.5 479 59.7
Glyma.02G297900 Glycine max HOM05D006454 ORTHO05D008024 1.3e-73 281.6 531 57.8
vmacro11560 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 6.4e-73 279.3 405 67.7
Dinv40835 Davidia involucrata HOM05D006454 ORTHO05D008024 4.1e-72 276.6 292 86.3
Rhsim06G0226800 Rhododendron simsii HOM05D006454 ORTHO05D008024 7.0e-72 275.8 549 55.0
GSVIVG01037780001 Vitis vinifera HOM05D006454 ORTHO05D008024 1.7e-70 271.2 466 59.0
SGA_v2.0_scaffold171G38887 Striga asiatica HOM05D006454 ORTHO05D008024 2.5e-69 267.3 488 58.4
AUR62017060 Chenopodium quinoa HOM05D006454 ORTHO05D008024 1.4e-67 261.5 477 58.5
AUR62040658 Chenopodium quinoa HOM05D006454 ORTHO05D008024 5.2e-67 259.6 491 54.4
EL10Ac4g07613 Beta vulgaris HOM05D006454 ORTHO05D008024 1.5e-66 258.1 343 72.3
PGR031G1939 Punica granatum HOM05D006454 ORTHO05D008024 3.4e-66 256.9 541 54.3
Ah.04g166440 Amaranthus hybridus HOM05D006454 ORTHO05D008024 4.6e-63 246.5 481 57.4
Psat2g008800 Pisum sativum HOM05D006454 ORTHO05D008024 4.6e-63 246.5 510 54.5
COL.COLO4_09787 Corchorus olitorius HOM05D006454 ORTHO05D008024 3.3e-61 240.4 507 58.2
PGSC0003DMG401029813 Solanum tuberosum HOM05D006454 ORTHO05D008024 3.1e-59 233.8 292 81.2
HPP92_007883 Vanilla planifolia HOM05D006454 ORTHO05D008024 1.2e-55 221.9 509 54.0
Actinidia00093 Actinidia chinensis HOM05D006454 ORTHO05D008024 1.1e-53 215.3 468 55.1
Hund01917 Selenicereus undatus HOM05D006454 ORTHO05D008024 1.1e-53 215.3 344 65.7
CAN.G489.2 Capsicum annuum HOM05D006454 ORTHO05D008024 7.3e-53 212.6 293 60.8
Oeu031063.1 Olea europaea HOM05D006454 ORTHO05D008024 1.3e-49 201.8 292 76.0
Sc16g0003560 Simmondsia chinensis HOM05D006454 ORTHO05D008024 3.2e-48 197.2 431 55.9
Cpa.g.sc12.193 Carica papaya HOM05D006454 ORTHO05D008024 4.8e-44 183.3 290 46.6
Prupe.4G234100 Prunus persica HOM05D006454 ORTHO05D008024 1.1e-43 182.2 235 83.4
BcaNung06723 Brassica carinata HOM05D000081 ORTHO05D008024 5.8e-42 176.4 342 47.4
HPP92_007898 Vanilla planifolia HOM05D006454 ORTHO05D008024 7.6e-42 176.0 290 72.1
Zm00001eb107900 Zea mays HOM05D006454 ORTHO05D008024 3.5e-39 167.2 504 49.0
Os07g0583200 Oryza sativa ssp. japonica HOM05D006454 ORTHO05D008024 2.5e-37 161.0 434 52.3
Hund01916 Selenicereus undatus HOM05D006454 ORTHO05D008024 9.6e-37 159.1 526 29.5
Cpa.g.sc12.192 Carica papaya HOM05D006454 ORTHO05D008024 3.6e-36 157.1 119 77.3
Nn1g07440 Nelumbo nucifera HOM05D006454 ORTHO05D008024 3.8e-33 147.1 112 77.7
unitig_899.g15274 Utricularia gibba HOM05D006454 ORTHO05D008024 2.7e-31 141.0 96 76.0
BolC2t07758H Brassica oleracea HOM05D006454 ORTHO05D008024 4.0e-27 127.1 124 57.3
Mapoly0042s0040 Marchantia polymorpha HOM05D006454 ORTHO05D008024 1.0e-22 112.5 323 53.6
Pp3c7_3780 Physcomitrium patens HOM05D006454 ORTHO05D008024 1.0e-22 112.5 321 56.1
vmacro10144 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 1.6e-20 105.1 281 31.0
SEGI_11937 Sequoiadendron giganteum HOM05D047912 ORTHO05D008024 2.8e-20 104.4 335 50.7
Pp3c11_22990 Physcomitrium patens HOM05D006454 ORTHO05D008024 8.2e-20 102.8 326 51.5
BcaNung06724 Brassica carinata HOM05D006454 ORTHO05D008024 2.1e-15 88.2 72 61.1
MCO01G181 Micromonas commoda HOM05D006454 ORTHO05D008024 2.6e-10 71.2 125 45.6
PRCOL_00000825 Prasinoderma coloniale HOM05D006454 ORTHO05D008024 1.7e-09 68.6 126 29.4
CiPaw.05G060800 Carya illinoinensis HOM05D001557 ORTHO05D001299 5.1e-06 57.0 61 44.3


User provided reference genes

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