Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 1.9e-297 1025.0 495 100.0
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 9.2e-276 953.0 501 92.8
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 7.8e-267 923.3 501 89.0
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 2.8e-240 835.1 507 80.5
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 6.9e-215 750.7 509 75.2
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 6.7e-194 681.0 510 67.8
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.5e-193 679.9 504 68.1
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 5.7e-193 677.9 504 68.1
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 3.7e-192 675.2 510 67.6
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 4.8e-192 674.9 512 66.4
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 4.8e-192 674.9 504 67.7
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 6.3e-192 674.5 510 67.1
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 6.3e-192 674.5 512 66.2
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 2.7e-190 669.1 508 66.5
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 6.5e-189 664.5 513 66.5
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 4.2e-188 661.8 514 66.0
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 2.6e-185 652.5 508 65.2
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 2.6e-185 652.5 514 64.8
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 8.3e-184 647.5 511 64.6
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.1e-183 647.1 504 64.9
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.1e-183 647.1 504 64.9
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 1.1e-183 647.1 519 64.2
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 1.2e-182 643.7 522 63.4
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 1.6e-182 643.3 509 64.2
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 1.6e-182 643.3 510 63.7
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 2.0e-182 642.9 508 64.2
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 3.5e-182 642.1 514 63.8
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 4.5e-182 641.7 525 63.0
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 1.7e-181 639.8 510 63.5
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 1.7e-181 639.8 514 66.0
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 6.5e-181 637.9 505 64.4
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 6.5e-181 637.9 505 64.4
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 1.1e-180 637.1 524 62.0
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 2.5e-180 636.0 520 62.5
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 5.5e-180 634.8 522 62.8
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 9.5e-180 634.0 511 63.4
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 1.6e-179 633.3 507 62.1
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 1.6e-179 633.3 518 61.8
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 1.6e-179 633.3 517 61.7
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 2.1e-179 632.9 528 61.7
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 2.1e-179 632.9 528 61.7
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 3.6e-179 632.1 524 61.8
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 8.0e-179 630.9 517 63.8
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 1.0e-178 630.6 519 61.5
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 1.4e-178 630.2 509 62.9
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.8e-178 629.8 514 62.3
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 5.2e-178 628.2 519 61.7
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 6.8e-178 627.9 509 63.7
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 1.2e-177 627.1 513 62.0
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 1.5e-177 626.7 523 60.4
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 3.4e-177 625.5 515 60.0
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 5.7e-177 624.8 514 61.5
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 9.8e-177 624.0 509 63.3
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 8.3e-176 620.9 518 60.8
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 1.1e-175 620.5 508 59.6
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 1.4e-175 620.2 546 60.3
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 3.1e-175 619.0 527 60.5
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 7.0e-175 617.8 519 61.5
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 2.0e-174 616.3 512 61.3
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 2.7e-174 615.9 508 62.8
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 4.5e-174 615.1 510 60.4
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 2.9e-173 612.5 544 58.1
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 2.9e-173 612.5 544 58.1
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.1e-172 610.5 509 63.3
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 1.1e-172 610.5 509 60.1
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.9e-172 609.8 518 62.5
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 1.4e-170 603.6 530 57.7
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 4.0e-170 602.1 502 61.4
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 5.2e-170 601.7 532 57.7
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 5.2e-170 601.7 515 60.4
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 8.9e-170 600.9 519 59.0
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 1.2e-169 600.5 524 60.3
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 1.5e-169 600.1 526 59.3
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 2.0e-169 599.7 532 57.7
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 2.6e-169 599.4 530 57.5
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 2.6e-169 599.4 530 57.7
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 1.3e-168 597.0 530 57.4
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 4.9e-168 595.1 517 59.6
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 8.3e-168 594.3 489 61.1
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 1.4e-167 593.6 546 57.3
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 1.8e-167 593.2 534 57.7
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 7.0e-167 591.3 511 60.3
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 9.2e-167 590.9 539 57.0
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 1.7e-165 586.6 539 57.0
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 2.5e-164 582.8 540 56.5
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 3.3e-164 582.4 515 56.1
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 7.3e-164 581.3 508 57.1
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 9.5e-164 580.9 522 58.6
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 1.6e-163 580.1 518 58.5
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 4.7e-163 578.6 522 57.9
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.8e-162 576.6 517 58.0
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 5.2e-162 575.1 517 57.4
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 2.6e-161 572.8 510 60.0
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 4.4e-161 572.0 530 57.4
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 5.8e-161 571.6 526 57.2
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 2.9e-160 569.3 512 58.2
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 1.1e-159 567.4 509 56.8
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 1.9e-159 566.6 522 56.5
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 2.4e-159 566.2 506 56.9
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.0e-157 560.8 478 59.0
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 1.2e-155 553.9 487 56.1
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 3.6e-155 552.4 485 56.3
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 7.5e-153 544.7 476 57.6
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 2.2e-152 543.1 402 66.4
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 4.3e-148 528.9 392 66.3
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 8.1e-147 524.6 518 53.5
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 1.5e-145 520.4 454 57.5
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 1.1e-140 504.2 446 57.4
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 9.6e-140 501.1 492 53.7
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 4.4e-137 492.3 434 56.0
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 2.9e-136 489.6 382 63.4
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 9.3e-135 484.6 459 55.6
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 1.1e-130 471.1 311 72.3
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 9.9e-129 464.5 426 56.8
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 1.9e-127 460.3 268 78.7
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 1.6e-123 447.2 306 69.9
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 1.2e-118 431.0 311 65.3
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 7.9e-118 428.3 310 64.5
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 2.1e-110 403.7 265 69.1
Sabra16G0237900 Salix brachista HOM05D004336 ORTHO05D005367 7.4e-108 395.2 246 76.4
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 6.9e-106 388.7 382 54.2
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 1.2e-105 387.9 468 42.9
QL04p097747 Quercus lobata HOM05D004336 ORTHO05D005367 2.9e-104 383.3 238 76.1
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 1.4e-103 380.9 470 43.4
Oeu019622.1 Olea europaea HOM05D004336 ORTHO05D005367 4.2e-103 379.4 241 72.6
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 4.6e-102 375.9 566 37.1
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 7.9e-94 348.6 515 43.3
RcHm_v2.0_Chr5g0080011 Rosa chinensis HOM05D004336 ORTHO05D005367 4.7e-86 322.8 330 53.6
MD11G1206700 Malus domestica HOM05D004336 ORTHO05D005367 1.4e-66 258.1 166 75.3
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 2.4e-66 257.3 339 45.4
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 2.9e-64 250.4 201 62.7
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 5.5e-63 246.1 313 44.7
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 1.8e-61 241.1 231 54.5
QL08p008521 Quercus lobata HOM05D004336 ORTHO05D005367 1.2e-54 218.4 216 55.6
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 1.1e-50 205.3 269 45.4
C09p46160 Brassica napus HOM05D004336 ORTHO05D005367 5.4e-50 203.0 157 65.0
Eucgr.I00174 Eucalyptus grandis HOM05D004336 ORTHO05D005367 2.0e-44 184.5 109 80.7
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 1.9e-39 167.9 243 44.4
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 9.5e-39 165.6 106 66.0
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 2.1e-38 164.5 244 44.3
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 1.1e-37 162.2 106 64.2
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 1.8e-37 161.4 118 61.0
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 1.8e-37 161.4 118 61.0
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 4.0e-37 160.2 458 26.0
Ah.06g181050 Amaranthus hybridus HOM05D004336 ORTHO05D005367 4.4e-36 156.8 176 49.4
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 4.4e-36 156.8 166 48.8
MSTRG.14468 Avicennia marina HOM05D004336 ORTHO05D005367 1.3e-35 155.2 173 50.3
SHI26544 Sapria himalayana HOM05D004336 ORTHO05D005367 2.9e-35 154.1 164 48.2
SEGI_14116 Sequoiadendron giganteum HOM05D004336 ORTHO05D005367 1.4e-34 151.8 284 37.0
TAR627G0477 Trochodendron aralioides HOM05D000054 ORTHO05D000171 2.8e-30 137.5 98 68.4
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 2.6e-28 131.0 73 74.0
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 2.6e-28 131.0 73 74.0
CDE07G0680 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 2.1e-25 121.3 162 46.9
BcaB05g23098 Brassica carinata HOM05D004336 ORTHO05D005367 2.7e-25 120.9 85 62.4
SHI22211 Sapria himalayana HOM05D004336 ORTHO05D005367 5.1e-24 116.7 246 33.3
RcHm_v2.0_Chr5g0079391 Rosa chinensis HOM05D004336 ORTHO05D005367 1.2e-20 105.5 90 61.1
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 2.2e-19 101.3 151 39.1
BcaB01g04317 Brassica carinata HOM05D004336 ORTHO05D005367 1.6e-17 95.1 72 65.3
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 1.7e-16 91.7 59 66.1
AL8G29720 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 4.8e-14 83.6 85 51.8
SHI48138 Sapria himalayana HOM05D004336 ORTHO05D005367 4.0e-13 80.5 256 27.7
HanXRQChr04g0109771 Helianthus annuus HOM05D004336 ORTHO05D005367 4.5e-12 77.0 87 47.1
TAR612G0001 Trochodendron aralioides HOM05D000054 ORTHO05D000171 3.0e-08 64.3 35 88.6
AagrBONN_evm.TU.Sc2ySwM_228.1050 Anthoceros agrestis HOM05D004336 ORTHO05D005367 3.3e-07 60.8 194 29.4


User provided reference genes

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