Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024871.2 Cucumis melo HOM05D006369 ORTHO05D007764 5.0e-126 454.5 241 100.0
CsaV3_4G008720 Cucumis sativus L. HOM05D006369 ORTHO05D007764 2.7e-116 422.2 241 93.8
ClCG10G009050 Citrullus lanatus HOM05D006369 ORTHO05D007764 1.9e-109 399.4 241 89.2
Sed0025457 Sechium edule HOM05D006369 ORTHO05D007764 1.6e-84 316.6 248 75.4
RcHm_v2.0_Chr1g0383921 Rosa chinensis HOM05D006369 ORTHO05D007764 1.7e-73 280.0 246 64.6
Dinv29169 Davidia involucrata HOM05D006369 ORTHO05D007764 1.4e-67 260.4 244 63.1
Manes.08G163800 Manihot esculenta HOM05D006369 ORTHO05D007764 1.8e-67 260.0 244 61.9
Prupe.2G324400 Prunus persica HOM05D006369 ORTHO05D007764 3.1e-67 259.2 243 60.9
FAN10G1961 Fragaria x ananassa HOM05D006369 ORTHO05D007764 4.0e-67 258.8 245 62.4
FAN10G2535 Fragaria x ananassa HOM05D006369 ORTHO05D007764 4.0e-67 258.8 245 62.4
FAN01G2653 Fragaria x ananassa HOM05D006369 ORTHO05D007764 5.3e-67 258.5 245 62.4
FvH4_7g33790 Fragaria vesca HOM05D006369 ORTHO05D007764 6.9e-67 258.1 245 62.4
Ciclev10021854m.g Citrus clementina HOM05D006369 ORTHO05D007764 2.0e-66 256.5 209 67.5
CiPaw.05G237500 Carya illinoinensis HOM05D006369 ORTHO05D007764 3.4e-66 255.8 249 60.2
FAN03G1142 Fragaria x ananassa HOM05D006369 ORTHO05D007764 5.8e-66 255.0 245 62.0
FAN03G2967 Fragaria x ananassa HOM05D006369 ORTHO05D007764 5.8e-66 255.0 245 62.0
Lj1A1033G61 Lonicera japonica HOM05D006369 ORTHO05D007764 1.1e-64 250.8 242 62.8
Potri.019G052400 Populus trichocarpa HOM05D006369 ORTHO05D007764 5.4e-64 248.4 246 61.0
CSS0035893 Camellia sinensis var. sinensis HOM05D006369 ORTHO05D007764 9.3e-64 247.7 260 57.7
MD07G1306400 Malus domestica HOM05D006369 ORTHO05D007764 1.0e-62 244.2 240 58.8
CiPaw.06G019700 Carya illinoinensis HOM05D006369 ORTHO05D007764 1.3e-62 243.8 237 59.1
Cfa015892 Carpinus fangiana HOM05D006369 ORTHO05D007764 1.7e-62 243.4 244 60.2
Atru.chr7.1119 Acer truncatum HOM05D006369 ORTHO05D007764 2.3e-62 243.0 244 60.7
TAR365G0740 Trochodendron aralioides HOM05D006369 ORTHO05D007764 3.9e-62 242.3 242 58.3
Actinidia00694 Actinidia chinensis HOM05D006369 ORTHO05D007764 1.1e-61 240.7 226 62.4
Thecc.03G000800 Theobroma cacao HOM05D006369 ORTHO05D007764 7.4e-61 238.0 239 57.3
Hund18049 Selenicereus undatus HOM05D006369 ORTHO05D007764 4.8e-60 235.3 251 57.4
Cc02_g00390 Coffea canephora HOM05D006369 ORTHO05D007764 8.1e-60 234.6 241 57.3
Lalb_Chr19g0139881 Lupinus albus HOM05D006369 ORTHO05D007764 6.9e-59 231.5 190 65.8
Nitab4.5_0000820g0010 Nicotiana tabacum HOM05D006369 ORTHO05D007764 1.5e-58 230.3 208 62.0
CANSAT21G0373 Cannabis sativa HOM05D006369 ORTHO05D007764 2.6e-58 229.6 218 61.9
VMungo1127G0993 Vigna mungo HOM05D006369 ORTHO05D007764 4.5e-58 228.8 248 57.7
Migut.F00102 Erythranthe guttata HOM05D006369 ORTHO05D007764 5.8e-58 228.4 223 61.0
MD01G1234200 Malus domestica HOM05D006369 ORTHO05D007764 7.6e-58 228.0 241 56.0
MSTRG.8579 Avicennia marina HOM05D006369 ORTHO05D007764 6.4e-57 224.9 233 56.2
Glyma.11G092500 Glycine max HOM05D006369 ORTHO05D007764 1.1e-56 224.2 243 56.0
Ah.08g212670 Amaranthus hybridus HOM05D006369 ORTHO05D007764 1.4e-56 223.8 249 56.2
Ca_04928_v3 Cicer arietinum L. HOM05D006369 ORTHO05D007764 1.4e-56 223.8 229 55.0
Duzib211G0044 Durio zibethinus HOM05D006369 ORTHO05D007764 1.9e-56 223.4 202 61.9
Phvul.011G021200 Phaseolus vulgaris HOM05D006369 ORTHO05D007764 5.5e-56 221.9 213 60.1
Glyma.12G018800 Glycine max HOM05D006369 ORTHO05D007764 1.2e-55 220.7 243 55.1
A02p03940 Brassica napus HOM05D006369 ORTHO05D007764 1.6e-55 220.3 220 59.1
Nitab4.5_0000001g0150 Nicotiana tabacum HOM05D006369 ORTHO05D007764 7.9e-55 218.0 208 63.0
Psat7g171520 Pisum sativum HOM05D006369 ORTHO05D007764 7.9e-55 218.0 230 53.9
CARHR196110 Cardamine hirsuta HOM05D006369 ORTHO05D007764 1.8e-54 216.9 243 55.1
Gohir.D07G184401 Gossypium hirsutum HOM05D006369 ORTHO05D007764 2.3e-54 216.5 222 57.7
Nn3g21321 Nelumbo nucifera HOM05D006369 ORTHO05D007764 2.3e-54 216.5 257 53.7
C02p08760 Brassica napus HOM05D006369 ORTHO05D007764 3.9e-54 215.7 250 52.0
EL10Ac7g17391 Beta vulgaris HOM05D006369 ORTHO05D007764 5.1e-54 215.3 252 54.4
Gorai.001G204600 Gossypium raimondii HOM05D006369 ORTHO05D007764 5.1e-54 215.3 222 57.7
THA.LOC104820876 Tarenaya hassleriana HOM05D006369 ORTHO05D007764 6.7e-54 214.9 245 53.9
BcaC03g18532 Brassica carinata HOM05D006369 ORTHO05D007764 1.5e-53 213.8 224 55.8
BolC2t06790H Brassica oleracea HOM05D006369 ORTHO05D007764 1.5e-53 213.8 224 55.8
BraA02t05358Z Brassica rapa HOM05D006369 ORTHO05D007764 1.5e-53 213.8 221 58.4
Gohir.A07G176900 Gossypium hirsutum HOM05D006369 ORTHO05D007764 4.3e-53 212.2 223 57.0
vmacro02505 Vaccinium macrocarpon HOM05D006369 ORTHO05D007764 9.6e-53 211.1 267 51.7
BcaNung00427 Brassica carinata HOM05D006369 ORTHO05D007764 1.3e-52 210.7 232 54.7
GSVIVG01024423001 Vitis vinifera HOM05D006369 ORTHO05D007764 1.3e-52 210.7 209 57.4
SalBow4G3280 Salvia bowleyana HOM05D006369 ORTHO05D007764 2.1e-52 209.9 232 54.7
Thhalv10014449m.g Eutrema salsugineum HOM05D006369 ORTHO05D007764 2.8e-52 209.5 225 56.0
arahy.Tifrunner.gnm1.ann1.WFP97B Arachis hypogaea HOM05D006369 ORTHO05D007764 3.7e-52 209.1 271 49.1
Carub.0006s1525 Capsella rubella HOM05D006369 ORTHO05D007764 4.8e-52 208.8 244 53.3
Sp6g27090 Schrenkiella parvula HOM05D006369 ORTHO05D007764 1.1e-51 207.6 232 53.9
Solyc03g062680.3 Solanum lycopersicum HOM05D006369 ORTHO05D007764 1.4e-51 207.2 209 60.3
Haze_00598 Corylus avellana HOM05D006369 ORTHO05D007764 1.8e-51 206.8 183 65.6
AL6G28090 Arabidopsis lyrata HOM05D006369 ORTHO05D007764 3.1e-51 206.1 200 62.0
CAN.G317.12 Capsicum annuum HOM05D006369 ORTHO05D007764 6.9e-51 204.9 200 59.0
Lj3g0017971 Lotus japonicus HOM05D006369 ORTHO05D007764 6.9e-51 204.9 267 51.3
Sopen03g015000 Solanum pennellii HOM05D006369 ORTHO05D007764 6.9e-51 204.9 209 59.8
Lsat_1_v5_gn_3_37940 Lactuca sativa HOM05D006369 ORTHO05D007764 7.6e-50 201.4 215 58.6
arahy.Tifrunner.gnm1.ann1.F9R2PF Arachis hypogaea HOM05D006369 ORTHO05D007764 1.0e-49 201.1 286 46.5
HanXRQChr17g0541681 Helianthus annuus HOM05D006369 ORTHO05D007764 2.2e-49 199.9 238 52.9
Aa31LG11G12610 Aethionema arabicum HOM05D006369 ORTHO05D007764 3.8e-49 199.1 197 60.4
AT5G17070 Arabidopsis thaliana HOM05D006369 ORTHO05D007764 3.8e-49 199.1 208 57.7
Peaxi162Scf00076g00928 Petunia axillaris HOM05D006369 ORTHO05D007764 4.9e-49 198.7 285 46.0
Medtr4g077610 Medicago truncatula HOM05D006369 ORTHO05D007764 2.5e-48 196.4 218 53.7
BcaB01g04960 Brassica carinata HOM05D006369 ORTHO05D007764 3.2e-48 196.1 251 51.4
MBI06_g08525_MAGBIO Magnolia biondii HOM05D006369 ORTHO05D007764 4.2e-48 195.7 216 56.5
TPR.G39567 Trifolium pratense HOM05D006369 ORTHO05D007764 7.1e-48 194.9 253 49.4
ECA246G2850 Erigeron canadensis HOM05D006369 ORTHO05D007764 2.7e-47 193.0 204 57.8
SGA_v2.0_scaffold18G08505 Striga asiatica HOM05D006369 ORTHO05D007764 2.7e-47 193.0 256 48.8
PGR042G2784 Punica granatum HOM05D006369 ORTHO05D007764 6.0e-47 191.8 235 51.9
Eucgr.A02962 Eucalyptus grandis HOM05D006369 ORTHO05D007764 1.8e-46 190.3 198 57.1
Aqoxy2G03109 Aquilegia oxysepala HOM05D006369 ORTHO05D007764 2.3e-46 189.9 243 47.7
Oeu005324.1 Olea europaea HOM05D006369 ORTHO05D007764 3.0e-46 189.5 168 64.3
Sc05g0004440 Simmondsia chinensis HOM05D006369 ORTHO05D007764 4.8e-44 182.2 171 62.0
Rhsim13G0016700 Rhododendron simsii HOM05D006369 ORTHO05D007764 3.4e-42 176.0 288 44.1
Psat1g047200 Pisum sativum HOM05D006369 ORTHO05D007764 5.9e-42 175.3 147 61.9
DCAR_020401 Daucus carota HOM05D006369 ORTHO05D007764 2.5e-40 169.9 228 46.9
PSO170G0520 Papaver somniferum HOM05D006369 ORTHO05D007764 2.1e-39 166.8 239 48.1
PSO210G6912 Papaver somniferum HOM05D006369 ORTHO05D007764 2.7e-39 166.4 239 49.8
Psat1g047280 Pisum sativum HOM05D006369 ORTHO05D007764 6.1e-39 165.2 139 62.6
Psat1g047240 Pisum sativum HOM05D006369 ORTHO05D007764 5.7e-37 158.7 173 50.9
CDE02G3455 Ceratophyllum demersum HOM05D006369 ORTHO05D007764 2.8e-36 156.4 209 49.8
HPP92_026820 Vanilla planifolia HOM05D006369 ORTHO05D007764 1.1e-35 154.5 218 47.2
unitig_747.g21708 Utricularia gibba HOM05D006369 ORTHO05D007764 5.0e-33 145.6 258 41.5
SEGI_01011 Sequoiadendron giganteum HOM05D006369 ORTHO05D007764 5.5e-32 142.1 157 52.2
Os06g0300700 Oryza sativa ssp. japonica HOM05D006369 ORTHO05D007764 7.2e-32 141.7 207 46.9
Zm00001eb381130 Zea mays HOM05D006369 ORTHO05D007764 1.6e-31 140.6 232 43.1
BraA03t10137Z Brassica rapa HOM05D006369 ORTHO05D007764 2.7e-31 139.8 168 51.2
ATR0213G006 Amborella trichopoda HOM05D006369 ORTHO05D007764 7.9e-31 138.3 183 49.2
CBR_g17900 Chara braunii HOM05D006369 ORTHO05D007764 6.1e-23 112.1 150 44.0
Pp3c20_5600 Physcomitrium patens HOM05D006369 ORTHO05D007764 7.9e-23 111.7 128 49.2
AagrBONN_evm.TU.Sc2ySwM_344.1770 Anthoceros agrestis HOM05D006369 ORTHO05D007764 1.0e-22 111.3 173 41.0
COL.COLO4_13442 Corchorus olitorius HOM05D006369 ORTHO05D007764 3.0e-22 109.8 190 41.1
Hma1.2p1_1235F.1_g269100 Hydrangea macrophylla HOM05D006369 ORTHO05D007764 1.7e-20 104.0 146 49.3
Mapoly0084s0069 Marchantia polymorpha HOM05D006369 ORTHO05D007764 6.3e-20 102.1 210 35.7
Dinv06133 Davidia involucrata HOM05D006369 ORTHO05D007764 9.1e-19 98.2 93 60.2
SMO141G0301 Selaginella moellendorffii HOM05D006369 ORTHO05D007764 1.2e-15 87.8 117 43.6
Sabra19G0056300 Salix brachista HOM05D006369 ORTHO05D007764 1.0e-14 84.7 95 53.7
C03p09390 Brassica napus HOM05D006369 ORTHO05D007764 3.0e-14 83.2 112 50.0
BcaB01g05232 Brassica carinata HOM05D006369 ORTHO05D007764 5.2e-14 82.4 112 50.0
RcHm_v2.0_Chr5g0041771 Rosa chinensis HOM05D006369 ORTHO05D007764 1.2e-13 81.3 68 63.2
BolC3t13440H Brassica oleracea HOM05D006369 ORTHO05D007764 3.7e-12 76.3 116 45.7
Cpa.g.sc39.77 Carica papaya HOM05D006369 ORTHO05D007764 7.0e-11 72.0 50 68.0
Sabra19G0056200 Salix brachista HOM05D006369 ORTHO05D007764 2.0e-10 70.5 49 77.6
Sabra19G0056100 Salix brachista HOM05D006369 ORTHO05D007764 5.9e-10 68.9 83 51.8
PGSC0003DMG401008641 Solanum tuberosum HOM05D006369 ORTHO05D007764 1.0e-09 68.2 96 53.1
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 5.0e-09 65.9 52 65.4
Cre10.g463700 Chlamydomonas reinhardtii HOM05D006369 ORTHO05D007764 8.5e-09 65.1 110 37.3
PGSC0003DMG402008641 Solanum tuberosum HOM05D006369 ORTHO05D007764 3.2e-08 63.2 43 60.5


User provided reference genes

Program Settings