Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024840.2 Cucumis melo HOM05D005838 ORTHO05D007177 1.1e-116 423.3 212 100.0
CsaV3_4G009680 Cucumis sativus L. HOM05D005838 ORTHO05D007177 1.2e-112 409.8 213 96.7
Sed0000199 Sechium edule HOM05D005838 ORTHO05D007177 3.7e-109 398.3 212 92.5
QL08p059697 Quercus lobata HOM05D005838 ORTHO05D007177 9.6e-89 330.5 210 74.3
FAN06G0860 Fragaria x ananassa HOM05D005838 ORTHO05D007177 3.6e-88 328.6 213 76.1
FAN06G0984 Fragaria x ananassa HOM05D005838 ORTHO05D007177 3.6e-88 328.6 213 76.1
RcHm_v2.0_Chr1g0367201 Rosa chinensis HOM05D005838 ORTHO05D007177 3.6e-88 328.6 213 76.1
CANSAT78G0186 Cannabis sativa HOM05D005838 ORTHO05D007177 4.8e-88 328.2 217 74.2
FAN10G2643 Fragaria x ananassa HOM05D005838 ORTHO05D007177 1.1e-87 327.0 213 75.6
FvH4_7g22520 Fragaria vesca HOM05D005838 ORTHO05D007177 2.4e-87 325.9 213 75.1
Thecc.10G041400 Theobroma cacao HOM05D005838 ORTHO05D007177 4.0e-87 325.1 210 75.7
Duzib114G0236 Durio zibethinus HOM05D005838 ORTHO05D007177 2.6e-86 322.4 210 74.8
Gohir.A10G219500 Gossypium hirsutum HOM05D005838 ORTHO05D007177 2.6e-86 322.4 210 74.3
Gohir.D10G229000 Gossypium hirsutum HOM05D005838 ORTHO05D007177 2.6e-86 322.4 210 74.3
Gorai.011G261500 Gossypium raimondii HOM05D005838 ORTHO05D007177 2.6e-86 322.4 210 74.3
CiPaw.01G287700 Carya illinoinensis HOM05D005838 ORTHO05D007177 3.4e-86 322.0 210 72.9
Haze_17070 Corylus avellana HOM05D005838 ORTHO05D007177 7.6e-86 320.9 198 75.8
MD01G1134500 Malus domestica HOM05D005838 ORTHO05D007177 9.9e-86 320.5 213 72.8
FAN01G2632 Fragaria x ananassa HOM05D005838 ORTHO05D007177 2.9e-85 318.9 207 75.4
Sc11g0007930 Simmondsia chinensis HOM05D005838 ORTHO05D007177 3.8e-85 318.5 212 72.2
COL.COLO4_15048 Corchorus olitorius HOM05D005838 ORTHO05D007177 1.1e-84 317.0 198 77.8
FAN01G2297 Fragaria x ananassa HOM05D005838 ORTHO05D007177 1.1e-84 317.0 207 74.9
FAN03G0424 Fragaria x ananassa HOM05D005838 ORTHO05D007177 1.9e-84 316.2 206 75.2
TAR369G1142 Trochodendron aralioides HOM05D005838 ORTHO05D007177 3.2e-84 315.5 190 78.9
CDE04G0192 Ceratophyllum demersum HOM05D005838 ORTHO05D007177 1.2e-83 313.5 212 70.8
Dinv03043 Davidia involucrata HOM05D005838 ORTHO05D007177 1.2e-83 313.5 209 72.2
Prupe.2G235900 Prunus persica HOM05D005838 ORTHO05D007177 1.2e-83 313.5 213 70.9
Aqoxy3G02271 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 4.6e-83 311.6 212 71.7
MD07G1199100 Malus domestica HOM05D005838 ORTHO05D007177 4.6e-83 311.6 213 70.4
Aqoxy6G01179 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 1.0e-82 310.5 212 71.2
GSVIVG01024370001 Vitis vinifera HOM05D005838 ORTHO05D007177 1.7e-82 309.7 209 71.8
Nn1g07214 Nelumbo nucifera HOM05D005838 ORTHO05D007177 2.3e-82 309.3 212 72.2
Os01g0248600 Oryza sativa ssp. japonica HOM05D005838 ORTHO05D007177 2.3e-82 309.3 212 69.8
Zm00001eb331580 Zea mays HOM05D005838 ORTHO05D007177 6.6e-82 307.8 212 70.3
HPP92_027375 Vanilla planifolia HOM05D005838 ORTHO05D007177 1.1e-81 307.0 212 69.8
CSS0040522 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 2.5e-81 305.8 210 70.0
AUR62012091 Chenopodium quinoa HOM05D005838 ORTHO05D007177 2.5e-81 305.8 205 70.7
AUR62039375 Chenopodium quinoa HOM05D005838 ORTHO05D007177 3.3e-81 305.4 205 70.2
Hund16085 Selenicereus undatus HOM05D005838 ORTHO05D007177 5.6e-81 304.7 212 70.3
PSO339G6019 Papaver somniferum HOM05D005838 ORTHO05D007177 9.6e-81 303.9 212 68.9
VMungo1383G0749 Vigna mungo HOM05D005838 ORTHO05D007177 1.6e-80 303.1 210 69.0
Dinv26018 Davidia involucrata HOM05D005838 ORTHO05D007177 2.1e-80 302.8 209 70.3
arahy.Tifrunner.gnm1.ann1.5TUK4V Arachis hypogaea HOM05D005838 ORTHO05D007177 1.1e-79 300.4 210 69.0
TPR.G2804 Trifolium pratense HOM05D005838 ORTHO05D007177 1.1e-79 300.4 210 70.0
PSO541G0023 Papaver somniferum HOM05D005838 ORTHO05D007177 1.8e-79 299.7 212 68.9
Lj8A84T88 Lonicera japonica HOM05D005838 ORTHO05D007177 3.1e-79 298.9 205 69.3
Ca_24072_v3 Cicer arietinum L. HOM05D005838 ORTHO05D007177 4.0e-79 298.5 210 70.0
Lalb_Chr22g0360471 Lupinus albus HOM05D005838 ORTHO05D007177 9.0e-79 297.4 198 71.7
Glyma.16G058300 Glycine max HOM05D005838 ORTHO05D007177 1.2e-78 297.0 210 68.6
TAR623G0537 Trochodendron aralioides HOM05D005838 ORTHO05D007177 2.0e-78 296.2 214 69.2
Atru.chr12.445 Acer truncatum HOM05D005838 ORTHO05D007177 2.6e-78 295.8 216 66.2
Eucgr.J00011 Eucalyptus grandis HOM05D005838 ORTHO05D007177 3.4e-78 295.4 214 71.0
Hma1.2p1_0405F.1_g145680 Hydrangea macrophylla HOM05D005838 ORTHO05D007177 3.4e-78 295.4 210 69.5
Phvul.001G114700 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 4.5e-78 295.0 210 67.6
EL10Ac2g04744 Beta vulgaris HOM05D005838 ORTHO05D007177 5.8e-78 294.7 227 64.3
arahy.Tifrunner.gnm1.ann1.YA5U61 Arachis hypogaea HOM05D005838 ORTHO05D007177 7.6e-78 294.3 205 68.8
Ca_13046_v3 Cicer arietinum L. HOM05D006351 ORTHO05D007796 1.7e-77 293.1 198 71.7
Ciclev10033314m.g Citrus clementina HOM05D005838 ORTHO05D007177 1.7e-77 293.1 197 70.1
Rhsim09G0166200 Rhododendron simsii HOM05D005838 ORTHO05D007177 2.2e-77 292.7 205 68.8
arahy.Tifrunner.gnm1.ann1.3RZV8E Arachis hypogaea HOM05D005838 ORTHO05D007177 2.9e-77 292.4 205 68.3
arahy.Tifrunner.gnm1.ann1.9R8UEA Arachis hypogaea HOM05D005838 ORTHO05D007177 1.1e-76 290.4 205 67.8
vmacro10230 Vaccinium macrocarpon HOM05D005838 ORTHO05D007177 1.9e-76 289.7 205 68.3
Medtr7g029455 Medicago truncatula HOM05D005838 ORTHO05D007177 4.2e-76 288.5 216 65.7
ATR0579G085 Amborella trichopoda HOM05D005838 ORTHO05D007177 5.4e-76 288.1 212 67.5
Manes.07G116600 Manihot esculenta HOM05D005838 ORTHO05D007177 5.4e-76 288.1 198 71.2
Cc02_g07820 Coffea canephora HOM05D005838 ORTHO05D007177 1.6e-75 286.6 213 66.2
Lsat_1_v5_gn_1_78580 Lactuca sativa HOM05D005838 ORTHO05D007177 1.6e-75 286.6 211 65.9
MBI14_g35405_MAGBIO Magnolia biondii HOM05D005838 ORTHO05D007177 2.7e-75 285.8 212 67.5
SGA_v2.0_scaffold2G01002 Striga asiatica HOM05D005838 ORTHO05D007177 6.0e-75 284.6 213 65.7
Potri.010G203600 Populus trichocarpa HOM05D005838 ORTHO05D007177 7.9e-75 284.3 212 67.0
Aa31sc79G70 Aethionema arabicum HOM05D005838 ORTHO05D007177 1.3e-74 283.5 212 66.5
AT3G12530 Arabidopsis thaliana HOM05D005838 ORTHO05D007177 1.8e-74 283.1 212 66.0
Lj1g0024127 Lotus japonicus HOM05D005838 ORTHO05D007177 1.8e-74 283.1 206 66.0
Sabra10G0157100 Salix brachista HOM05D005838 ORTHO05D007177 1.8e-74 283.1 212 67.5
AL3G24160 Arabidopsis lyrata HOM05D005838 ORTHO05D007177 3.9e-74 282.0 212 66.0
CARHR087030 Cardamine hirsuta HOM05D005838 ORTHO05D007177 5.1e-74 281.6 212 66.0
SEGI_05999 Sequoiadendron giganteum HOM05D005838 ORTHO05D007177 8.7e-74 280.8 212 65.6
Oeu064376.1 Olea europaea HOM05D005838 ORTHO05D007177 1.1e-73 280.4 213 65.3
Sp3g10660 Schrenkiella parvula HOM05D005838 ORTHO05D007177 1.1e-73 280.4 212 65.6
HanXRQChr17g0562051 Helianthus annuus HOM05D005838 ORTHO05D007177 3.3e-73 278.9 210 63.3
Thhalv10021517m.g Eutrema salsugineum HOM05D005838 ORTHO05D007177 1.3e-72 276.9 212 64.6
Carub.0003s1186 Capsella rubella HOM05D005838 ORTHO05D007177 1.6e-72 276.6 212 64.6
Duzib128G0804 Durio zibethinus HOM05D005838 ORTHO05D007177 1.6e-72 276.6 191 70.7
MSTRG.287 Avicennia marina HOM05D005838 ORTHO05D007177 2.8e-72 275.8 213 64.8
TWI34G1817 Tripterygium wilfordii HOM05D005838 ORTHO05D007177 3.1e-71 272.3 212 65.6
Migut.M01657 Erythranthe guttata HOM05D005838 ORTHO05D007177 6.9e-71 271.2 214 63.6
CAN.G1013.29 Capsicum annuum HOM05D005838 ORTHO05D007177 1.2e-70 270.4 213 64.8
Solyc05g054430.4 Solanum lycopersicum HOM05D005838 ORTHO05D007177 1.2e-70 270.4 213 65.3
Sopen05g032920 Solanum pennellii HOM05D005838 ORTHO05D007177 1.2e-70 270.4 213 65.3
PGSC0003DMG402023533 Solanum tuberosum HOM05D005838 ORTHO05D007177 1.2e-70 270.4 213 65.3
BolC3t16845H Brassica oleracea HOM05D005838 ORTHO05D007177 3.4e-70 268.9 212 62.3
BraA03t12920Z Brassica rapa HOM05D005838 ORTHO05D007177 1.0e-69 267.3 212 61.8
BcaB04g21071 Brassica carinata HOM05D005838 ORTHO05D007177 1.3e-69 266.9 218 61.5
ECA238G0467 Erigeron canadensis HOM05D005838 ORTHO05D007177 6.5e-69 264.6 199 62.3
C03p45720 Brassica napus HOM05D005838 ORTHO05D007177 1.9e-68 263.1 196 63.8
HanXRQChr14g0458031 Helianthus annuus HOM05D005838 ORTHO05D007177 2.5e-68 262.7 194 63.9
THA.LOC104827330 Tarenaya hassleriana HOM05D005838 ORTHO05D007177 3.2e-68 262.3 193 67.4
DCAR_011703 Daucus carota HOM05D005838 ORTHO05D007177 5.5e-68 261.5 181 69.1
A03p37670 Brassica napus HOM05D005838 ORTHO05D007177 9.3e-68 260.8 196 63.3
PGR044G1343 Punica granatum HOM05D005838 ORTHO05D007177 1.6e-67 260.0 214 64.0
Nitab4.5_0008565g0020 Nicotiana tabacum HOM05D005838 ORTHO05D007177 1.8e-66 256.5 237 57.8
Mapoly0001s0197 Marchantia polymorpha HOM05D005838 ORTHO05D007177 7.4e-65 251.1 208 57.7
SMO358G0240 Selaginella moellendorffii HOM05D005838 ORTHO05D007177 4.8e-64 248.4 172 66.9
ECA236G5038 Erigeron canadensis HOM05D005838 ORTHO05D007177 6.2e-64 248.1 186 62.4
Peaxi162Scf00886g00023 Petunia axillaris HOM05D005838 ORTHO05D007177 2.4e-63 246.1 196 63.8
Actinidia13881 Actinidia chinensis HOM05D005838 ORTHO05D007177 4.1e-63 245.4 155 75.5
Nitab4.5_0025932g0010 Nicotiana tabacum HOM05D005838 ORTHO05D007177 3.8e-61 238.8 210 59.5
Pp3c24_19790 Physcomitrium patens HOM05D005838 ORTHO05D007177 7.2e-60 234.6 214 55.6
Phvul.004G101800 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 1.1e-55 220.7 144 70.8
CBR_g83733 Chara braunii HOM05D005838 ORTHO05D007177 2.0e-54 216.5 165 56.4
Potri.008G056200 Populus trichocarpa HOM05D005838 ORTHO05D007177 4.5e-46 188.7 212 51.4
AagrBONN_evm.TU.Sc2ySwM_117.2288 Anthoceros agrestis HOM05D005838 ORTHO05D007177 2.7e-43 179.5 177 49.2
ECA240G3935 Erigeron canadensis HOM05D005838 ORTHO05D007177 2.8e-40 169.5 113 69.0
ClCG10G009550 Citrullus lanatus HOM05D005838 ORTHO05D007177 1.6e-38 163.7 79 97.5
SalBow6G6757 Salvia bowleyana HOM05D005838 ORTHO05D007177 9.4e-36 154.5 136 60.3
PRCOL_00001833 Prasinoderma coloniale HOM05D005838 ORTHO05D007177 5.7e-33 145.2 182 40.1
MCO01G144 Micromonas commoda HOM05D005838 ORTHO05D007177 3.8e-29 132.5 163 41.7
AagrBONN_evm.TU.Sc2ySwM_368.230 Anthoceros agrestis HOM05D005838 ORTHO05D007177 4.7e-27 125.6 113 48.7
Ah.04g162270 Amaranthus hybridus HOM05D005838 ORTHO05D007177 1.4e-23 114.0 63 79.4
Cre01.g029100 Chlamydomonas reinhardtii HOM05D005838 ORTHO05D007177 1.2e-22 110.9 160 41.2
unitig_27.g25062 Utricularia gibba HOM05D005838 ORTHO05D007177 1.1e-20 104.4 116 48.3
Cpa.g.sc1.409 Carica papaya HOM05D005838 ORTHO05D007177 6.3e-16 88.6 90 61.1
BcaC09g48252 Brassica carinata HOM05D000758 ORTHO05D001216 9.2e-15 84.7 135 37.8
CSS0016900 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 1.2e-14 84.3 46 76.1
Oeu048244.1 Olea europaea HOM05D005838 ORTHO05D007177 1.2e-14 84.3 50 72.0
BolC5t34206H Brassica oleracea HOM05D005838 ORTHO05D007177 7.3e-12 75.1 83 53.0
C05p55400 Brassica napus HOM05D005838 ORTHO05D007177 1.0e-10 71.2 69 56.5
C01p52640 Brassica napus HOM05D005838 ORTHO05D007177 5.2e-10 68.9 61 54.1
BolC1t05204H Brassica oleracea HOM05D005838 ORTHO05D007177 3.7e-08 62.8 55 54.5
Psat7g263960 Pisum sativum HOM05D005838 ORTHO05D007177 4.9e-08 62.4 49 59.2
BNapus_Darmor_BZH_scaffold_149p00070 Brassica napus HOM05D005838 ORTHO05D041122 2.4e-07 60.1 136 32.4
Dinv18752 Davidia involucrata HOM05D036176 ORTHO05D007177 7.0e-07 58.5 41 68.3
Actinidia29229 Actinidia chinensis HOM05D005838 ORTHO05D007177 2.0e-06 57.0 40 67.5


User provided reference genes

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