Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024776.2 Cucumis melo HOM05D006040 ORTHO05D007134 2.1e-249 865.1 412 100.0
CsaV3_2G035690 Cucumis sativus L. HOM05D006040 ORTHO05D007134 7.0e-229 797.0 412 92.2
ClCG02G007980 Citrullus lanatus HOM05D006040 ORTHO05D007134 8.0e-225 783.5 413 90.1
Sed0006638 Sechium edule HOM05D006040 ORTHO05D007134 3.4e-183 645.2 413 75.1
Cfa018660 Carpinus fangiana HOM05D006040 ORTHO05D007134 4.8e-145 518.5 427 60.2
QL01p000066 Quercus lobata HOM05D006040 ORTHO05D007134 5.0e-142 508.4 379 63.9
Dinv29187 Davidia involucrata HOM05D006040 ORTHO05D007134 4.0e-139 498.8 437 58.1
MD07G1303900 Malus domestica HOM05D006040 ORTHO05D007134 4.4e-138 495.4 407 57.0
FvH4_7g32290 Fragaria vesca HOM05D006040 ORTHO05D007134 3.7e-137 492.3 422 57.8
FAN20G2114 Fragaria x ananassa HOM05D006040 ORTHO05D007134 6.3e-137 491.5 422 57.6
Prupe.2G322500 Prunus persica HOM05D006040 ORTHO05D007134 1.1e-136 490.7 420 56.2
RcHm_v2.0_Chr1g0383341 Rosa chinensis HOM05D006040 ORTHO05D007134 7.0e-136 488.0 423 57.4
FAN03G3503 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.6e-135 486.9 426 56.3
FAN10G3876 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.6e-135 486.9 426 56.3
TAR375G0263 Trochodendron aralioides HOM05D006040 ORTHO05D007134 3.2e-133 479.2 435 56.6
FAN10G2970 Fragaria x ananassa HOM05D006040 ORTHO05D007134 5.5e-133 478.4 426 55.4
FAN06G3790 Fragaria x ananassa HOM05D006040 ORTHO05D007134 9.4e-133 477.6 415 56.9
arahy.Tifrunner.gnm1.ann1.QSB9JP Arachis hypogaea HOM05D006040 ORTHO05D007134 1.2e-132 477.2 412 59.0
arahy.Tifrunner.gnm1.ann1.53C9AK Arachis hypogaea HOM05D006040 ORTHO05D007134 4.7e-132 475.3 412 58.5
Glyma.02G220600 Glycine max HOM05D006040 ORTHO05D007134 1.0e-131 474.2 420 55.2
Lalb_Chr10g0102951 Lupinus albus HOM05D006040 ORTHO05D007134 4.0e-131 472.2 422 57.1
TWI13G0007 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 2.0e-130 469.9 425 56.7
TWI74G0239 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 2.0e-130 469.9 425 56.7
Actinidia18692 Actinidia chinensis HOM05D006040 ORTHO05D007134 3.4e-130 469.2 420 56.7
CANSAT21G0186 Cannabis sativa HOM05D006040 ORTHO05D007134 6.3e-129 464.9 414 56.3
LjContig00155g0021870 Lotus japonicus HOM05D006040 ORTHO05D007134 8.3e-129 464.5 422 57.1
VMungo0647G0797 Vigna mungo HOM05D006040 ORTHO05D007134 1.4e-128 463.8 405 57.8
Medtr5g068730 Medicago truncatula HOM05D006040 ORTHO05D007134 2.4e-128 463.0 371 59.8
TPR.G27916 Trifolium pratense HOM05D006040 ORTHO05D007134 7.0e-128 461.5 371 60.4
Hma1.2p1_1235F.1_g269220 Hydrangea macrophylla HOM05D006040 ORTHO05D007134 7.7e-127 458.0 437 53.8
Atru.chr12.2497 Acer truncatum HOM05D006040 ORTHO05D007134 1.7e-126 456.8 411 55.7
Atru.chr12.2521 Acer truncatum HOM05D006040 ORTHO05D007134 1.7e-126 456.8 411 55.7
Sabra12G0000200 Salix brachista HOM05D006040 ORTHO05D007134 1.7e-126 456.8 426 53.8
Ca_05537_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 2.2e-126 456.4 370 60.8
Psat2g061600 Pisum sativum HOM05D006040 ORTHO05D007134 2.2e-126 456.4 372 59.4
Manes.05G196800 Manihot esculenta HOM05D006040 ORTHO05D007134 1.5e-125 453.8 416 54.3
Potri.012G004300 Populus trichocarpa HOM05D006040 ORTHO05D007134 4.2e-125 452.2 412 54.1
Lj3C891T14 Lonicera japonica HOM05D006040 ORTHO05D007134 1.2e-124 450.7 398 56.5
PSO063G2217 Papaver somniferum HOM05D006040 ORTHO05D007134 1.5e-122 443.7 398 55.0
Aqoxy3G00220 Aquilegia oxysepala HOM05D006040 ORTHO05D007134 7.5e-122 441.4 429 53.8
PGR042G3864 Punica granatum HOM05D006040 ORTHO05D007134 1.1e-120 437.6 422 52.8
Rhsim09G0211300 Rhododendron simsii HOM05D006040 ORTHO05D007134 1.1e-120 437.6 417 55.2
Eucgr.A00979 Eucalyptus grandis HOM05D006040 ORTHO05D007134 3.1e-120 436.0 421 52.3
Lalb_Chr08g0239381 Lupinus albus HOM05D006040 ORTHO05D007134 1.2e-119 434.1 363 60.6
Glyma.06G139400 Glycine max HOM05D006040 ORTHO05D007134 4.5e-119 432.2 390 57.9
GSVIVG01038686001 Vitis vinifera HOM05D006040 ORTHO05D007134 3.8e-118 429.1 417 54.7
PSO017G1458 Papaver somniferum HOM05D006040 ORTHO05D007134 1.1e-117 427.6 417 52.0
Thecc.03G212500 Theobroma cacao HOM05D006040 ORTHO05D007134 1.1e-117 427.6 406 53.2
CSS0020482 Camellia sinensis var. sinensis HOM05D006040 ORTHO05D007134 5.6e-117 425.2 401 54.4
Lj1g0004094 Lotus japonicus HOM05D006040 ORTHO05D007134 9.5e-117 424.5 414 53.1
Cpa.g.sc3.191 Carica papaya HOM05D006040 ORTHO05D007134 1.8e-115 420.2 363 57.6
Gorai.004G126800 Gossypium raimondii HOM05D006040 ORTHO05D007134 4.0e-115 419.1 362 57.7
Cc02_g00560 Coffea canephora HOM05D006040 ORTHO05D007134 4.4e-114 415.6 423 51.3
Phvul.009G040600 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 7.5e-114 414.8 363 57.3
TPR.G35913 Trifolium pratense HOM05D006040 ORTHO05D007134 1.3e-113 414.1 363 57.3
Ca_16841_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 2.2e-113 413.3 357 57.7
AUR62005943 Chenopodium quinoa HOM05D006040 ORTHO05D007134 3.5e-111 406.0 412 49.5
Medtr3g093420 Medicago truncatula HOM05D006040 ORTHO05D007134 7.8e-111 404.8 363 55.6
MSTRG.18 Avicennia marina HOM05D006040 ORTHO05D007134 3.9e-110 402.5 368 55.4
AUR62028121 Chenopodium quinoa HOM05D006040 ORTHO05D007134 3.9e-110 402.5 412 49.5
Zm00001eb209800 Zea mays HOM05D006040 ORTHO05D007134 3.9e-110 402.5 417 50.8
FvH4_7g33360 Fragaria vesca HOM05D006040 ORTHO05D007134 8.6e-110 401.4 300 63.0
Psat5g070440 Pisum sativum HOM05D006040 ORTHO05D007134 1.5e-109 400.6 357 53.8
PGSC0003DMG400026928 Solanum tuberosum HOM05D006040 ORTHO05D007134 2.1e-108 396.7 415 49.9
Hund21080 Selenicereus undatus HOM05D006040 ORTHO05D007134 4.7e-108 395.6 413 47.9
Sc25g0001060 Simmondsia chinensis HOM05D006040 ORTHO05D007134 4.7e-108 395.6 355 54.4
ATR0579G018 Amborella trichopoda HOM05D006040 ORTHO05D007134 6.2e-108 395.2 405 49.9
SalBow2G1501 Salvia bowleyana HOM05D006040 ORTHO05D007134 8.0e-108 394.8 352 54.8
CAN.G65.140 Capsicum annuum HOM05D006040 ORTHO05D007134 8.9e-107 391.3 359 52.6
Nitab4.5_0000115g0200 Nicotiana tabacum HOM05D006040 ORTHO05D007134 8.9e-107 391.3 411 47.7
Solyc06g072970.3 Solanum lycopersicum HOM05D006040 ORTHO05D007134 8.9e-107 391.3 415 50.1
Peaxi162Scf00815g00228 Petunia axillaris HOM05D006040 ORTHO05D007134 1.5e-106 390.6 384 50.5
Os02g0106700 Oryza sativa ssp. japonica HOM05D006040 ORTHO05D007134 3.4e-106 389.4 419 49.6
Sopen06g029320 Solanum pennellii HOM05D006040 ORTHO05D007134 1.3e-105 387.5 415 49.2
HPP92_012812 Vanilla planifolia HOM05D006040 ORTHO05D007134 2.2e-105 386.7 416 51.0
EL10Ac3g05126 Beta vulgaris HOM05D006040 ORTHO05D007134 4.9e-105 385.6 416 47.8
Phvul.008G187700 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 4.9e-105 385.6 354 55.9
Zm00001eb229510 Zea mays HOM05D006040 ORTHO05D007134 6.4e-105 385.2 417 48.7
ECA238G4129 Erigeron canadensis HOM05D006040 ORTHO05D007134 1.4e-104 384.0 353 54.7
Migut.F00965 Erythranthe guttata HOM05D006040 ORTHO05D007134 4.1e-104 382.5 371 53.1
HanXRQChr14g0463001 Helianthus annuus HOM05D006040 ORTHO05D007134 1.6e-103 380.6 399 50.6
DCAR_010554 Daucus carota HOM05D006040 ORTHO05D007134 6.0e-103 378.6 409 50.1
Nitab4.5_0003012g0150 Nicotiana tabacum HOM05D006040 ORTHO05D007134 7.8e-103 378.3 452 44.0
THA.LOC104798996 Tarenaya hassleriana HOM05D006040 ORTHO05D007134 6.6e-102 375.2 364 52.7
Sp2g22720 Schrenkiella parvula HOM05D006040 ORTHO05D007134 3.3e-101 372.9 365 51.5
Thhalv10004343m.g Eutrema salsugineum HOM05D006040 ORTHO05D007134 3.6e-100 369.4 364 51.6
BraA06t26478Z Brassica rapa HOM05D006040 ORTHO05D007134 1.1e-99 367.9 408 48.8
AT5G24680 Arabidopsis thaliana HOM05D006040 ORTHO05D007134 1.4e-99 367.5 364 51.9
A06p35530 Brassica napus HOM05D006040 ORTHO05D007134 3.1e-99 366.3 367 52.6
unitig_578.g16670 Utricularia gibba HOM05D006040 ORTHO05D007134 7.5e-98 361.7 364 51.6
C07p43010 Brassica napus HOM05D006040 ORTHO05D007134 1.7e-97 360.5 360 54.2
BolC7t44830H Brassica oleracea HOM05D006040 ORTHO05D007134 1.7e-97 360.5 360 54.2
Carub.0006s2254 Capsella rubella HOM05D006040 ORTHO05D007134 6.4e-97 358.6 405 47.9
SGA_v2.0_scaffold59G20786 Striga asiatica HOM05D006040 ORTHO05D007134 8.3e-97 358.2 406 47.3
AL6G36290 Arabidopsis lyrata HOM05D006040 ORTHO05D007134 3.2e-96 356.3 346 52.9
Lsat_1_v5_gn_8_36881 Lactuca sativa HOM05D006040 ORTHO05D007134 3.9e-94 349.4 342 49.7
SEGI_40721 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 5.1e-94 349.0 401 47.6
Gohir.A08G107000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 1.7e-89 334.0 362 49.2
Glyma.14G187200 Glycine max HOM05D006040 ORTHO05D007134 2.9e-89 333.2 364 49.5
Aa31LG11G3920 Aethionema arabicum HOM05D006040 ORTHO05D007134 1.4e-88 330.9 504 39.9
Haze_00002 Corylus avellana HOM05D006040 ORTHO05D007134 7.3e-85 318.5 280 56.8
FAN01G0445 Fragaria x ananassa HOM05D006040 ORTHO05D007134 4.4e-82 309.3 308 51.3
BcaNung01250 Brassica carinata HOM05D006040 ORTHO05D007134 7.6e-82 308.5 362 47.5
COL.COLO4_14403 Corchorus olitorius HOM05D002417 ORTHO05D002589 3.0e-78 296.6 264 56.8
vmacro10175 Vaccinium macrocarpon HOM05D006040 ORTHO05D007134 7.3e-77 292.0 297 52.2
MBI12_g33183_MAGBIO Magnolia biondii HOM05D006040 ORTHO05D007134 1.4e-75 287.7 323 47.7
Pp3c12_6120 Physcomitrium patens HOM05D006040 ORTHO05D007134 9.0e-75 285.0 474 35.9
Glyma.04G225400 Glycine max HOM05D006040 ORTHO05D007134 2.6e-74 283.5 316 49.7
Duzib068G0842 Durio zibethinus HOM05D006040 ORTHO05D007134 5.8e-74 282.3 264 54.5
Pp3c13_14780 Physcomitrium patens HOM05D006040 ORTHO05D007134 4.9e-73 279.3 411 38.4
Pp3c20_10180 Physcomitrium patens HOM05D006040 ORTHO05D007134 2.7e-71 273.5 405 36.8
Pp3c25_2290 Physcomitrium patens HOM05D006040 ORTHO05D007134 3.3e-69 266.5 413 36.3
VMungo1309G2872 Vigna mungo HOM05D006040 ORTHO05D007134 9.0e-67 258.5 340 44.1
Mapoly0044s0025 Marchantia polymorpha HOM05D006040 ORTHO05D007134 2.2e-65 253.8 491 34.2
Mapoly0088s0074 Marchantia polymorpha HOM05D006040 ORTHO05D007134 7.4e-61 238.8 548 28.8
CARHR188790 Cardamine hirsuta HOM05D006040 ORTHO05D007134 5.5e-56 222.6 164 64.6
Lalb_Chr14g0364691 Lupinus albus HOM05D006040 ORTHO05D007134 7.4e-53 212.2 174 59.2
MD01G1231800 Malus domestica HOM05D006040 ORTHO05D007134 9.6e-53 211.8 146 64.4
FvH4_7g33700 Fragaria vesca HOM05D006040 ORTHO05D007134 3.8e-49 199.9 267 41.6
CBR_g29958 Chara braunii HOM05D006040 ORTHO05D007134 1.6e-47 194.5 496 28.6
CBR_g3746 Chara braunii HOM05D000019 ORTHO05D000002 7.4e-45 185.7 141 60.3
Gohir.D08G118000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 1.3e-44 184.9 318 36.5
Pp3c23_1100 Physcomitrium patens HOM05D006040 ORTHO05D007134 5.9e-42 176.0 184 47.8
SEGI_39404 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 2.3e-38 164.1 259 36.3
SEGI_00936 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 1.4e-35 154.8 158 46.8
SMO347G0626 Selaginella moellendorffii HOM05D006040 ORTHO05D007134 1.0e-30 138.7 208 39.9
MD01G1231900 Malus domestica HOM05D006040 ORTHO05D007134 3.3e-29 133.7 88 67.0
Oeu063747.1 Olea europaea HOM05D006040 ORTHO05D007134 1.6e-26 124.8 98 60.2
SEGI_38707 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 2.5e-24 117.5 254 29.5
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 1.2e-15 88.6 117 45.3
CDE04G3558 Ceratophyllum demersum HOM05D006040 ORTHO05D007134 1.4e-11 75.1 57 59.6
Cre05.g240500 Chlamydomonas reinhardtii HOM05D006040 ORTHO05D007134 2.7e-10 70.9 54 59.3
SalBow2G3456 Salvia bowleyana HOM05D000168 ORTHO05D007134 2.2e-09 67.8 35 85.7
Oeu063748.2 Olea europaea HOM05D003307 ORTHO05D003798 1.5e-08 65.1 52 51.9
TPR.G7402 Trifolium pratense HOM05D023930 ORTHO05D006106 3.0e-06 57.4 101 33.7


User provided reference genes

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