Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024754.2 Cucumis melo HOM05D005356 ORTHO05D006596 1.7e-235 818.9 415 100.0
CsaV3_2G035860 Cucumis sativus L. HOM05D005356 ORTHO05D006596 8.1e-225 783.5 415 96.1
Sed0019262 Sechium edule HOM05D005356 ORTHO05D006596 1.1e-194 683.3 415 85.1
Sed0017544 Sechium edule HOM05D005356 ORTHO05D006596 6.3e-193 677.6 415 84.6
ClCG02G007870 Citrullus lanatus HOM05D005356 ORTHO05D006596 1.2e-167 593.6 444 73.6
Ciclev10031697m.g Citrus clementina HOM05D005356 ORTHO05D006596 1.3e-145 520.4 406 65.0
Atru.chr12.1818 Acer truncatum HOM05D005356 ORTHO05D006596 4.9e-145 518.5 415 66.3
Thecc.05G227000 Theobroma cacao HOM05D005356 ORTHO05D006596 1.7e-142 510.0 346 72.3
Manes.08G159200 Manihot esculenta HOM05D005356 ORTHO05D006596 2.9e-142 509.2 368 68.8
CiPaw.05G210900 Carya illinoinensis HOM05D005356 ORTHO05D006596 8.6e-142 507.7 346 71.1
arahy.Tifrunner.gnm1.ann1.RW14FX Arachis hypogaea HOM05D005356 ORTHO05D006596 7.3e-141 504.6 377 66.3
Gorai.004G255200 Gossypium raimondii HOM05D005356 ORTHO05D006596 9.5e-141 504.2 373 66.8
arahy.Tifrunner.gnm1.ann1.509DQ1 Arachis hypogaea HOM05D005356 ORTHO05D006596 2.1e-140 503.1 377 66.3
CiPaw.06G037000 Carya illinoinensis HOM05D005356 ORTHO05D006596 2.1e-140 503.1 389 65.6
Peaxi162Scf00263g00323 Petunia axillaris HOM05D005356 ORTHO05D006596 2.8e-140 502.7 392 63.8
FvH4_7g34281 Fragaria vesca HOM05D005356 ORTHO05D006596 1.8e-139 500.0 355 68.5
Lj3g0010653 Lotus japonicus HOM05D005356 ORTHO05D006596 3.0e-139 499.2 396 63.4
TAR629G3426 Trochodendron aralioides HOM05D005356 ORTHO05D006596 6.8e-139 498.0 401 63.1
Gohir.A08G221634 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.2e-138 497.3 373 65.7
CAN.G2009.1 Capsicum annuum HOM05D005356 ORTHO05D006596 1.5e-138 496.9 397 62.2
TAR375G1012 Trochodendron aralioides HOM05D005356 ORTHO05D006596 2.6e-138 496.1 388 64.7
Gorai.007G246900 Gossypium raimondii HOM05D005356 ORTHO05D006596 3.4e-138 495.7 354 67.2
Nn1g09227 Nelumbo nucifera HOM05D005356 ORTHO05D006596 4.4e-138 495.4 392 64.8
Gohir.D11G234600 Gossypium hirsutum HOM05D005356 ORTHO05D006596 7.5e-138 494.6 354 66.9
RcHm_v2.0_Chr1g0384641 Rosa chinensis HOM05D005356 ORTHO05D006596 7.5e-138 494.6 352 68.8
Sabra13G0065300 Salix brachista HOM05D005356 ORTHO05D006596 7.5e-138 494.6 357 68.6
Gohir.A11G226000 Gossypium hirsutum HOM05D005356 ORTHO05D006596 9.8e-138 494.2 354 67.2
COL.COLO4_32921 Corchorus olitorius HOM05D005356 ORTHO05D006596 1.3e-137 493.8 345 69.3
Solyc04g064720.3 Solanum lycopersicum HOM05D005356 ORTHO05D006596 1.3e-137 493.8 346 68.2
Sopen04g026680 Solanum pennellii HOM05D005356 ORTHO05D006596 1.3e-137 493.8 346 68.2
PGSC0003DMG400024812 Solanum tuberosum HOM05D005356 ORTHO05D006596 1.7e-137 493.4 386 63.2
Prupe.2G329800 Prunus persica HOM05D005356 ORTHO05D006596 2.2e-137 493.0 343 70.6
Potri.013G076100 Populus trichocarpa HOM05D005356 ORTHO05D006596 3.7e-137 492.3 387 65.4
GSVIVG01024263001 Vitis vinifera HOM05D005356 ORTHO05D006596 1.4e-136 490.3 367 67.6
Hund11857 Selenicereus undatus HOM05D005356 ORTHO05D006596 1.8e-136 490.0 349 69.1
Nitab4.5_0002990g0020 Nicotiana tabacum HOM05D005356 ORTHO05D006596 3.2e-136 489.2 397 61.5
Medtr0172s0020 Medicago truncatula HOM05D005356 ORTHO05D006596 7.0e-136 488.0 339 69.9
Nitab4.5_0000299g0040 Nicotiana tabacum HOM05D005356 ORTHO05D006596 1.2e-135 487.3 376 64.1
PGR119G0933 Punica granatum HOM05D005356 ORTHO05D006596 4.6e-135 485.3 369 68.3
PGR008G0003 Punica granatum HOM05D005356 ORTHO05D006596 5.9e-135 485.0 382 66.8
Glyma.12G013400 Glycine max HOM05D005356 ORTHO05D006596 7.8e-135 484.6 376 66.2
MD07G1311300 Malus domestica HOM05D005356 ORTHO05D006596 7.8e-135 484.6 365 66.6
Eucgr.A02993 Eucalyptus grandis HOM05D005356 ORTHO05D006596 1.0e-134 484.2 346 68.5
Nn3g19190 Nelumbo nucifera HOM05D005356 ORTHO05D006596 1.0e-134 484.2 417 59.7
Sabra19G0053800 Salix brachista HOM05D005356 ORTHO05D006596 1.0e-134 484.2 384 64.3
PGR131G0008 Punica granatum HOM05D005356 ORTHO05D006596 1.3e-134 483.8 369 68.0
Phvul.011G016500 Phaseolus vulgaris HOM05D005356 ORTHO05D006596 2.3e-134 483.0 359 68.0
Sp6g26700 Schrenkiella parvula HOM05D005356 ORTHO05D006596 3.0e-134 482.6 345 68.4
PSO782G1515 Papaver somniferum HOM05D005356 ORTHO05D006596 5.0e-134 481.9 367 64.3
THA.LOC104820830 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 4.3e-133 478.8 347 66.9
BraA10t44246Z Brassica rapa HOM05D005356 ORTHO05D006596 5.6e-133 478.4 351 69.2
THA.LOC104802905 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 5.6e-133 478.4 347 68.0
A02p04240 Brassica napus HOM05D005356 ORTHO05D006596 7.3e-133 478.0 385 63.1
BraA02t05387Z Brassica rapa HOM05D005356 ORTHO05D006596 7.3e-133 478.0 385 63.1
Hma1.2p1_0564F.1_g179310 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 2.1e-132 476.5 371 65.0
AL6G28610 Arabidopsis lyrata HOM05D005356 ORTHO05D006596 2.8e-132 476.1 349 67.6
Dinv17238 Davidia involucrata HOM05D005356 ORTHO05D006596 2.8e-132 476.1 403 62.3
A10p21870 Brassica napus HOM05D005356 ORTHO05D006596 6.2e-132 474.9 351 68.7
C02p09120 Brassica napus HOM05D005356 ORTHO05D006596 6.2e-132 474.9 419 59.4
BcaC04g18781 Brassica carinata HOM05D005356 ORTHO05D006596 1.4e-131 473.8 347 68.6
Hma1.2p1_0419F.1_g149580 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 1.4e-131 473.8 336 69.0
Aa31LG11G12150 Aethionema arabicum HOM05D005356 ORTHO05D006596 1.8e-131 473.4 347 67.1
BolC2t06824H Brassica oleracea HOM05D005356 ORTHO05D006596 3.1e-131 472.6 413 59.8
AT5G17520 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 4.0e-131 472.2 353 66.0
Cc10_g12920 Coffea canephora HOM05D005356 ORTHO05D006596 6.8e-131 471.5 344 66.3
TPR.G9827 Trifolium pratense HOM05D005356 ORTHO05D006596 6.8e-131 471.5 355 65.6
BcaC03g13524 Brassica carinata HOM05D005356 ORTHO05D006596 8.9e-131 471.1 396 61.1
AUR62002252 Chenopodium quinoa HOM05D005356 ORTHO05D006596 8.9e-131 471.1 398 60.8
Lalb_Chr01g0000721 Lupinus albus HOM05D005356 ORTHO05D006596 8.9e-131 471.1 368 64.4
DCAR_009031 Daucus carota HOM05D005356 ORTHO05D006596 1.2e-130 470.7 359 63.8
Psat0s2502g0200 Pisum sativum HOM05D005356 ORTHO05D006596 3.4e-130 469.2 379 61.7
EL10Ac3g05893 Beta vulgaris HOM05D005356 ORTHO05D006596 2.2e-129 466.5 428 57.7
MSTRG.24194 Avicennia marina HOM05D005356 ORTHO05D006596 8.3e-129 464.5 346 65.9
C09p59620 Brassica napus HOM05D005356 ORTHO05D006596 8.3e-129 464.5 347 67.4
BolC9t58801H Brassica oleracea HOM05D005356 ORTHO05D006596 8.3e-129 464.5 347 67.4
BcaB08g36764 Brassica carinata HOM05D005356 ORTHO05D006596 1.1e-128 464.2 345 67.2
Os04g0602400 Oryza sativa ssp. japonica HOM05D005356 ORTHO05D006596 2.4e-128 463.0 359 64.6
CARHR195670 Cardamine hirsuta HOM05D005356 ORTHO05D006596 4.1e-128 462.2 346 66.2
CANSAT21G1742 Cannabis sativa HOM05D005356 ORTHO05D006596 7.0e-128 461.5 341 66.3
HanXRQChr05g0139001 Helianthus annuus HOM05D005356 ORTHO05D006596 2.7e-127 459.5 383 62.1
ECA232G1465 Erigeron canadensis HOM05D005356 ORTHO05D006596 3.5e-127 459.1 410 58.0
VMungo0647G2360 Vigna mungo HOM05D005356 ORTHO05D006596 6.0e-127 458.4 305 73.1
Lsat_1_v5_gn_9_47941 Lactuca sativa HOM05D005356 ORTHO05D006596 1.0e-126 457.6 413 58.1
ATR0369G003 Amborella trichopoda HOM05D005356 ORTHO05D006596 2.3e-126 456.4 419 56.8
Oeu030531.2 Olea europaea HOM05D005356 ORTHO05D006596 8.6e-126 454.5 393 57.5
Aqoxy1G01762 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 1.5e-125 453.8 339 64.6
Aqoxy3G04210 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 1.9e-125 453.4 378 59.3
AUR62015463 Chenopodium quinoa HOM05D005356 ORTHO05D006596 2.5e-125 453.0 414 57.5
Migut.N03237 Erythranthe guttata HOM05D005356 ORTHO05D006596 5.6e-125 451.8 346 62.7
SalBow7G2700 Salvia bowleyana HOM05D005356 ORTHO05D006596 1.4e-123 447.2 352 62.8
Migut.C01041 Erythranthe guttata HOM05D005356 ORTHO05D006596 3.1e-123 446.0 344 62.2
SalBow6G3313 Salvia bowleyana HOM05D005356 ORTHO05D006596 4.9e-121 438.7 340 62.1
A10p21860 Brassica napus HOM05D005356 ORTHO05D006596 4.1e-120 435.6 324 68.8
Manes.09G130400 Manihot esculenta HOM05D005356 ORTHO05D006596 7.1e-120 434.9 379 59.9
FAN03G1362 Fragaria x ananassa HOM05D005356 ORTHO05D006596 9.2e-120 434.5 324 66.7
Oeu015013.2 Olea europaea HOM05D005356 ORTHO05D006596 2.5e-117 426.4 420 52.4
MD01G1240200 Malus domestica HOM05D005356 ORTHO05D006596 7.3e-117 424.9 346 62.4
PSO063G2098 Papaver somniferum HOM05D005356 ORTHO05D006596 2.4e-112 409.8 317 64.7
Actinidia33804 Actinidia chinensis HOM05D005356 ORTHO05D006596 2.7e-111 406.4 393 55.5
MSTRG.22381 Avicennia marina HOM05D005356 ORTHO05D006596 6.0e-111 405.2 324 59.6
Duzib177G1190 Durio zibethinus HOM05D005356 ORTHO05D006596 3.9e-110 402.5 285 69.1
Cpa.g.sc43.152 Carica papaya HOM05D005356 ORTHO05D006596 7.3e-109 398.3 334 62.0
SEGI_37553 Sequoiadendron giganteum HOM05D005356 ORTHO05D006596 1.6e-108 397.1 321 60.4
Gohir.D08G239900 Gossypium hirsutum HOM05D005356 ORTHO05D006596 2.1e-108 396.7 270 70.4
Ca_19620_v3 Cicer arietinum L. HOM05D005356 ORTHO05D006596 1.8e-107 393.7 269 69.5
unitig_744.g24563 Utricularia gibba HOM05D005356 ORTHO05D006596 1.2e-106 391.0 338 58.0
Lj3A883T53 Lonicera japonica HOM05D005356 ORTHO05D006596 1.5e-106 390.6 280 68.6
Haze_00348 Corylus avellana HOM05D005356 ORTHO05D006596 4.9e-105 385.6 360 58.6
SGA_v2.0_scaffold19G08642 Striga asiatica HOM05D005356 ORTHO05D006596 4.9e-105 385.6 334 57.5
Rhsim09G0214300 Rhododendron simsii HOM05D005356 ORTHO05D006596 8.4e-105 384.8 565 41.1
Carub.0006s1575 Capsella rubella HOM05D005356 ORTHO05D006596 2.2e-97 360.1 261 67.4
Pp3c6_18710 Physcomitrium patens HOM05D005356 ORTHO05D006596 6.7e-94 348.6 345 51.0
Mapoly0051s0014 Marchantia polymorpha HOM05D005356 ORTHO05D006596 5.3e-91 339.0 320 52.5
CDE11G1065 Ceratophyllum demersum HOM05D005356 ORTHO05D006596 2.2e-89 333.6 348 52.6
AagrBONN_evm.TU.Sc2ySwM_228.477 Anthoceros agrestis HOM05D005356 ORTHO05D006596 5.5e-88 328.9 316 53.5
SMO012G0030 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 2.7e-87 326.6 369 48.2
MBI04_g30781_MAGBIO Magnolia biondii HOM05D005356 ORTHO05D006596 3.5e-87 326.2 300 59.0
Pp3c24_890 Physcomitrium patens HOM05D005356 ORTHO05D006596 7.9e-87 325.1 313 53.4
Sopen04g026690 Solanum pennellii HOM05D005356 ORTHO05D006596 2.9e-81 306.6 264 59.1
HPP92_022764 Vanilla planifolia HOM05D005356 ORTHO05D006596 5.1e-78 295.8 220 62.3
SMO118G0252 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 2.1e-76 290.4 279 55.6
CANSAT21G0168 Cannabis sativa HOM05D005356 ORTHO05D006596 4.8e-76 289.3 218 64.2
vmacro22188 Vaccinium macrocarpon HOM05D005356 ORTHO05D006596 6.7e-70 268.9 256 55.5
CSS0033101 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 1.6e-68 264.2 238 59.7
CANSAT21G1370 Cannabis sativa HOM05D005356 ORTHO05D006596 3.1e-67 260.0 173 70.5
Zm00001eb071770 Zea mays HOM05D005356 ORTHO05D006596 5.9e-66 255.8 208 63.5
Sc03g0005650 Simmondsia chinensis HOM05D005356 ORTHO05D006596 7.7e-66 255.4 203 64.5
Pp3c23_14070 Physcomitrium patens HOM05D005356 ORTHO05D006596 3.7e-60 236.5 245 51.8
Actinidia04557 Actinidia chinensis HOM05D005356 ORTHO05D006596 2.9e-49 200.3 224 46.9
AT5G17523 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 1.8e-46 191.0 160 62.5
Thhalv10016106m.g Eutrema salsugineum HOM05D005356 ORTHO05D006596 4.8e-44 183.0 117 70.1
MCO10G093 Micromonas commoda HOM05D005356 ORTHO05D006596 1.2e-37 161.8 331 35.3
Cre12.g486600 Chlamydomonas reinhardtii HOM05D005356 ORTHO05D006596 1.1e-35 155.2 341 32.0
Pp3c24_840 Physcomitrium patens HOM05D005356 ORTHO05D006596 1.4e-35 154.8 145 53.1
Glyma.09G223400 Glycine max HOM05D005356 ORTHO05D006596 1.6e-34 151.4 91 75.8
CSS0037967 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 4.7e-31 139.8 76 81.6
PRCOL_00004977 Prasinoderma coloniale HOM05D005356 ORTHO05D006596 5.7e-29 132.9 293 31.4
CBR_g17686 Chara braunii HOM05D005356 ORTHO05D006596 1.2e-21 108.6 103 49.5
Pp3c21_10850 Physcomitrium patens HOM05D005356 ORTHO05D310352 1.3e-17 95.1 188 33.5
CBR_g17688 Chara braunii HOM05D005356 ORTHO05D006596 1.9e-16 91.3 94 44.7
Zm00001eb003380 Zea mays HOM05D001522 ORTHO05D001547 8.0e-15 85.9 77 59.7
HPP92_022763 Vanilla planifolia HOM05D005356 ORTHO05D006596 2.2e-12 77.8 49 73.5


User provided reference genes

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