Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024703.2 Cucumis melo HOM05D003644 ORTHO05D004305 7.3e-99 364.0 198 100.0
CsaV3_1G021830 Cucumis sativus L. HOM05D003644 ORTHO05D004305 2.9e-95 352.1 198 94.9
ClCG06G008860 Citrullus lanatus HOM05D003644 ORTHO05D004305 4.4e-88 328.2 205 89.8
Sed0013314 Sechium edule HOM05D003644 ORTHO05D004305 2.4e-73 279.3 201 79.6
CANSAT56G0200 Cannabis sativa HOM05D003644 ORTHO05D004305 1.8e-36 156.8 224 46.4
Manes.16G112500 Manihot esculenta HOM05D003644 ORTHO05D004305 6.7e-36 154.8 207 51.7
QL02p044635 Quercus lobata HOM05D003644 ORTHO05D004305 6.7e-36 154.8 213 50.2
Duzib168G0231 Durio zibethinus HOM05D003644 ORTHO05D004305 8.8e-36 154.5 207 49.8
Ciclev10010512m.g Citrus clementina HOM05D003644 ORTHO05D004305 7.4e-35 151.4 213 52.6
Thecc.09G105500 Theobroma cacao HOM05D003644 ORTHO05D004305 1.3e-34 150.6 212 49.5
GSVIVG01015346001 Vitis vinifera HOM05D003644 ORTHO05D004305 1.7e-34 150.2 210 47.6
Duzib150G1566 Durio zibethinus HOM05D003644 ORTHO05D004305 6.3e-34 148.3 206 50.0
Potri.018G084100 Populus trichocarpa HOM05D003644 ORTHO05D004305 8.2e-34 147.9 212 49.5
CiPaw.03G227900 Carya illinoinensis HOM05D003644 ORTHO05D004305 1.8e-33 146.7 213 49.3
Potri.006G161100 Populus trichocarpa HOM05D003644 ORTHO05D004305 4.1e-33 145.6 202 49.5
Prupe.7G225200 Prunus persica HOM05D003644 ORTHO05D004305 9.1e-33 144.4 216 50.9
Manes.03G024200 Manihot esculenta HOM05D003644 ORTHO05D004305 5.9e-32 141.7 211 46.4
Duzib187G1156 Durio zibethinus HOM05D003644 ORTHO05D004305 7.7e-32 141.4 211 46.9
ClCG11G002330 Citrullus lanatus HOM05D003644 ORTHO05D004305 1.7e-31 140.2 207 49.8
THA.LOC104814562 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 1.7e-31 140.2 213 45.5
Peaxi162Scf00665g00003 Petunia axillaris HOM05D003644 ORTHO05D004305 8.5e-31 137.9 202 46.5
Cpa.g.sc23.57 Carica papaya HOM05D003644 ORTHO05D004305 1.1e-30 137.5 210 44.8
MBI04_g14930_MAGBIO Magnolia biondii HOM05D003644 ORTHO05D004305 1.9e-30 136.7 205 45.4
Sed0019018 Sechium edule HOM05D003644 ORTHO05D004305 2.5e-30 136.3 202 46.0
CsaV3_2G002110 Cucumis sativus L. HOM05D003644 ORTHO05D004305 9.4e-30 134.4 210 49.5
MD02G1057600 Malus domestica HOM05D003644 ORTHO05D004305 9.4e-30 134.4 215 51.2
Gorai.010G073900 Gossypium raimondii HOM05D003644 ORTHO05D004305 1.2e-29 134.0 203 46.8
arahy.Tifrunner.gnm1.ann1.TDG8V6 Arachis hypogaea HOM05D003644 ORTHO05D004305 6.1e-29 131.7 222 42.8
FAN19G0617 Fragaria x ananassa HOM05D003644 ORTHO05D004305 8.0e-29 131.3 214 50.0
CSS0010496 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 1.0e-28 131.0 214 43.9
CSS0033414 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 1.0e-28 131.0 214 43.9
FAN26G0903 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.0e-28 131.0 214 50.5
FAN26G3023 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.4e-28 130.6 214 50.5
CSS0008241 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 1.8e-28 130.2 212 47.2
MELO3C004570.2 Cucumis melo HOM05D003644 ORTHO05D004305 1.8e-28 130.2 209 49.3
FvH4_1g05660 Fragaria vesca HOM05D003644 ORTHO05D004305 1.8e-28 130.2 214 49.5
Haze_25785 Corylus avellana HOM05D003644 ORTHO05D004305 2.3e-28 129.8 211 45.5
VMungo0251G1747 Vigna mungo HOM05D003644 ORTHO05D004305 4.0e-28 129.0 212 44.3
TWI34G1832 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 5.2e-28 128.6 217 47.0
TAR624G1421 Trochodendron aralioides HOM05D003644 ORTHO05D004305 5.2e-28 128.6 204 45.6
TAR636G2793 Trochodendron aralioides HOM05D003644 ORTHO05D004305 5.2e-28 128.6 208 42.8
Gohir.A05G025200 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.1e-27 127.5 207 50.7
FAN28G1311 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.5e-27 127.1 225 47.6
Gohir.D05G026700 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.5e-27 127.1 210 50.0
Glyma.05G229100 Glycine max HOM05D003644 ORTHO05D004305 2.0e-27 126.7 208 44.2
arahy.Tifrunner.gnm1.ann1.XM0XDL Arachis hypogaea HOM05D003644 ORTHO05D004305 2.6e-27 126.3 214 48.1
Gohir.D06G063400 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.6e-27 126.3 201 45.8
Nn3g18137 Nelumbo nucifera HOM05D003644 ORTHO05D004305 2.6e-27 126.3 213 43.2
Sabra18G0072500 Salix brachista HOM05D003644 ORTHO05D004305 2.6e-27 126.3 234 40.2
Glyma.08G036100 Glycine max HOM05D003644 ORTHO05D004305 7.5e-27 124.8 205 42.9
Atru.chr7.1390 Acer truncatum HOM05D003644 ORTHO05D004305 1.3e-26 124.0 215 48.8
AL3G48010 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 2.2e-26 123.2 203 46.3
Phvul.002G311400 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 2.2e-26 123.2 212 44.3
FAN23G2152 Fragaria x ananassa HOM05D003644 ORTHO05D004305 3.7e-26 122.5 225 44.9
Phvul.004G168350 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 4.8e-26 122.1 209 45.9
Gohir.A06G064800 Gossypium hirsutum HOM05D003644 ORTHO05D004305 8.2e-26 121.3 203 44.8
Gorai.009G026800 Gossypium raimondii HOM05D003644 ORTHO05D004305 8.2e-26 121.3 217 47.5
Glyma.09G193400 Glycine max HOM05D003644 ORTHO05D004305 1.8e-25 120.2 205 42.9
Thhalv10002311m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 2.4e-25 119.8 211 46.0
Peaxi162Scf00231g00061 Petunia axillaris HOM05D003644 ORTHO05D004305 2.4e-25 119.8 207 48.3
Glyma.01G145600 Glycine max HOM05D003644 ORTHO05D004305 4.1e-25 119.0 208 46.2
AT4G28840 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 5.3e-25 118.6 213 46.9
Carub.0007s1180 Capsella rubella HOM05D003644 ORTHO05D004305 5.3e-25 118.6 216 45.8
TWI32G0193 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 7.0e-25 118.2 208 44.7
BcaC07g41224 Brassica carinata HOM05D003644 ORTHO05D004305 9.1e-25 117.9 203 42.4
C08p42300 Brassica napus HOM05D003644 ORTHO05D004305 1.6e-24 117.1 205 42.0
BolC8t51790H Brassica oleracea HOM05D003644 ORTHO05D004305 1.6e-24 117.1 205 42.0
MD15G1192000 Malus domestica HOM05D003644 ORTHO05D004305 1.6e-24 117.1 215 47.4
BolC1t01024H Brassica oleracea HOM05D003644 ORTHO05D004305 2.0e-24 116.7 203 41.4
CAN.G1774.6 Capsicum annuum HOM05D003644 ORTHO05D004305 2.0e-24 116.7 165 44.8
Lj2g0017641 Lotus japonicus HOM05D003644 ORTHO05D004305 2.0e-24 116.7 213 44.1
Oeu015581.1 Olea europaea HOM05D003644 ORTHO05D004305 2.0e-24 116.7 206 44.7
THA.LOC104804017 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 2.0e-24 116.7 204 46.6
C01p10620 Brassica napus HOM05D003644 ORTHO05D004305 2.7e-24 116.3 203 41.4
BraA01t00855Z Brassica rapa HOM05D003644 ORTHO05D004305 2.7e-24 116.3 203 41.4
PGSC0003DMG400000374 Solanum tuberosum HOM05D003644 ORTHO05D004305 2.7e-24 116.3 205 47.3
CARHR110580 Cardamine hirsuta HOM05D003644 ORTHO05D004305 3.5e-24 115.9 201 44.3
Sp7g26840 Schrenkiella parvula HOM05D003644 ORTHO05D004305 3.5e-24 115.9 208 49.0
A01p09070 Brassica napus HOM05D003644 ORTHO05D004305 4.5e-24 115.5 203 41.4
Nn2g11654 Nelumbo nucifera HOM05D003644 ORTHO05D004305 1.0e-23 114.4 216 41.7
PGR142G1369 Punica granatum HOM05D003644 ORTHO05D004305 1.0e-23 114.4 225 42.2
MSTRG.6013 Avicennia marina HOM05D003644 ORTHO05D004305 1.3e-23 114.0 207 42.0
Sopen12g003210 Solanum pennellii HOM05D003644 ORTHO05D004305 1.3e-23 114.0 203 47.3
A09p59020 Brassica napus HOM05D003644 ORTHO05D004305 1.7e-23 113.6 205 42.0
BraA09t41288Z Brassica rapa HOM05D003644 ORTHO05D004305 1.7e-23 113.6 205 42.0
DCAR_012057 Daucus carota HOM05D003644 ORTHO05D004305 1.7e-23 113.6 215 40.9
Dinv41640 Davidia involucrata HOM05D003644 ORTHO05D004305 2.2e-23 113.2 172 45.3
RcHm_v2.0_Chr2g0091291 Rosa chinensis HOM05D003644 ORTHO05D004305 2.2e-23 113.2 172 50.6
Gorai.001G007300 Gossypium raimondii HOM05D003644 ORTHO05D004305 2.9e-23 112.8 214 42.1
arahy.Tifrunner.gnm1.ann1.X7P2RE Arachis hypogaea HOM05D003644 ORTHO05D004305 5.0e-23 112.1 146 49.3
VMungo0464G0020 Vigna mungo HOM05D003644 ORTHO05D004305 5.0e-23 112.1 213 43.7
Psat1g044920 Pisum sativum HOM05D003644 ORTHO05D004305 3.2e-22 109.4 211 41.7
SalBow6G0047 Salvia bowleyana HOM05D003644 ORTHO05D004305 3.2e-22 109.4 210 44.3
BcaC09g51666 Brassica carinata HOM05D003644 ORTHO05D004305 5.5e-22 108.6 169 44.4
Sp3g33380 Schrenkiella parvula HOM05D003644 ORTHO05D004305 7.2e-22 108.2 211 42.7
AUR62010940 Chenopodium quinoa HOM05D003644 ORTHO05D004305 9.4e-22 107.8 214 39.7
COL.COLO4_34805 Corchorus olitorius HOM05D003644 ORTHO05D004305 9.4e-22 107.8 204 46.1
BcaC06g32601 Brassica carinata HOM05D003644 ORTHO05D004305 1.2e-21 107.5 206 40.8
arahy.Tifrunner.gnm1.ann1.R9ZCFD Arachis hypogaea HOM05D003644 ORTHO05D004305 1.6e-21 107.1 170 49.4
PGSC0003DMG400003139 Solanum tuberosum HOM05D003644 ORTHO05D004305 1.6e-21 107.1 200 41.5
Sopen07g007520 Solanum pennellii HOM05D003644 ORTHO05D004305 2.1e-21 106.7 198 40.4
Gohir.D07G007600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.7e-21 106.3 212 41.0
Sed0028016 Sechium edule HOM05D003644 ORTHO05D004305 2.7e-21 106.3 206 39.8
Medtr6g088280 Medicago truncatula HOM05D003644 ORTHO05D004305 3.6e-21 105.9 214 41.6
Carub.0003s3436 Capsella rubella HOM05D003644 ORTHO05D004305 6.1e-21 105.1 156 51.3
BolC7t46126H Brassica oleracea HOM05D003644 ORTHO05D004305 8.0e-21 104.8 206 41.3
Lalb_Chr22g0352641 Lupinus albus HOM05D003644 ORTHO05D004305 8.0e-21 104.8 218 44.5
PSO566G0277 Papaver somniferum HOM05D003644 ORTHO05D004305 8.0e-21 104.8 207 42.0
BcaNung01359 Brassica carinata HOM05D003644 ORTHO05D004305 1.0e-20 104.4 173 43.9
A03p58450 Brassica napus HOM05D003644 ORTHO05D004305 1.0e-20 104.4 206 41.3
Hund09226 Selenicereus undatus HOM05D003644 ORTHO05D004305 1.4e-20 104.0 191 40.8
PSO782G2161 Papaver somniferum HOM05D003644 ORTHO05D004305 1.8e-20 103.6 207 42.0
TPR.G34913 Trifolium pratense HOM05D003644 ORTHO05D004305 1.8e-20 103.6 214 40.2
C07p56470 Brassica napus HOM05D003644 ORTHO05D004305 4.0e-20 102.4 206 40.8
Hma1.2p1_0945F.1_g240090 Hydrangea macrophylla HOM05D003644 ORTHO05D004305 1.2e-19 100.9 202 46.0
Gohir.A07G004600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 3.4e-19 99.4 181 43.1
Aa31LG2G21540 Aethionema arabicum HOM05D003644 ORTHO05D004305 5.7e-19 98.6 172 49.4
Cc06_g10070 Coffea canephora HOM05D003644 ORTHO05D004305 7.5e-19 98.2 210 39.0
BcaC07g41225 Brassica carinata HOM05D003644 ORTHO05D004305 3.7e-18 95.9 157 40.1
Lalb_Chr05g0223051 Lupinus albus HOM05D003644 ORTHO05D004305 4.8e-18 95.5 177 45.8
BcaB08g34898 Brassica carinata HOM05D003644 ORTHO05D004305 6.3e-18 95.1 159 39.6
C09p15050 Brassica napus HOM05D003644 ORTHO05D004305 8.3e-18 94.7 163 44.8
Hund09225 Selenicereus undatus HOM05D003644 ORTHO05D004305 8.3e-18 94.7 212 44.8
Actinidia09436 Actinidia chinensis HOM05D003644 ORTHO05D004305 1.4e-17 94.0 207 43.0
MSTRG.19571 Avicennia marina HOM05D003644 ORTHO05D004305 1.4e-17 94.0 172 39.0
ECA234G2378 Erigeron canadensis HOM05D003644 ORTHO05D004305 4.1e-17 92.4 184 40.8
Lsat_1_v5_gn_8_96040 Lactuca sativa HOM05D003644 ORTHO05D004305 5.4e-17 92.0 128 50.0
Aa31LG8G17030 Aethionema arabicum HOM05D003644 ORTHO05D004305 9.1e-17 91.3 152 46.1
A09p12690 Brassica napus HOM05D003644 ORTHO05D004305 1.6e-16 90.5 167 42.5
BcaC04g22808 Brassica carinata HOM05D003644 ORTHO05D004305 2.7e-16 89.7 167 44.9
BolC9t54408H Brassica oleracea HOM05D003644 ORTHO05D004305 2.7e-16 89.7 167 44.9
Sc18g0001380 Simmondsia chinensis HOM05D003644 ORTHO05D004305 5.9e-16 88.6 198 37.9
BcaNung04091 Brassica carinata HOM05D003644 ORTHO05D004305 7.7e-16 88.2 177 44.1
Thhalv10026355m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 5.0e-15 85.5 198 35.9
Oeu002262.2 Olea europaea HOM05D003644 ORTHO05D004305 5.0e-15 85.5 140 47.1
Nitab4.5_0014820g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 1.9e-14 83.6 140 41.4
Actinidia32668 Actinidia chinensis HOM05D003644 ORTHO05D004305 3.2e-14 82.8 126 40.5
EL10Ac8g18428 Beta vulgaris HOM05D003644 ORTHO05D004305 7.2e-14 81.6 214 35.5
AT2G20080 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 2.1e-13 80.1 196 40.8
DCAR_010477 Daucus carota HOM05D003644 ORTHO05D004305 2.1e-13 80.1 204 34.3
TPR.G23503 Trifolium pratense HOM05D003644 ORTHO05D004305 2.1e-13 80.1 162 41.4
Actinidia20403 Actinidia chinensis HOM05D003644 ORTHO05D004305 2.7e-13 79.7 203 39.4
Lalb_Chr16g0388081 Lupinus albus HOM05D003644 ORTHO05D004305 8.0e-13 78.2 144 39.6
PGR102G0050 Punica granatum HOM05D003644 ORTHO05D004305 3.0e-12 76.3 179 39.7
HanXRQChr12g0358181 Helianthus annuus HOM05D003644 ORTHO05D004305 5.2e-12 75.5 165 35.8
BolC7t40541H Brassica oleracea HOM05D003644 ORTHO05D004305 8.8e-12 74.7 207 35.3
Migut.K00491 Erythranthe guttata HOM05D003644 ORTHO05D004305 1.2e-11 74.3 205 37.1
Solyc12g007240.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 1.5e-11 73.9 130 41.5
Aqoxy7G01525 Aquilegia oxysepala HOM05D003644 ORTHO05D004305 2.0e-11 73.6 205 33.2
Hund26238 Selenicereus undatus HOM05D003644 ORTHO05D004305 4.4e-11 72.4 205 31.2
A07p00580 Brassica napus HOM05D003644 ORTHO05D004305 5.7e-11 72.0 203 34.0
Sc08g0007690 Simmondsia chinensis HOM05D003644 ORTHO05D004305 5.7e-11 72.0 198 38.9
COL.COLO4_17464 Corchorus olitorius HOM05D003644 ORTHO05D004305 2.8e-10 69.7 151 41.7
Nitab4.5_0002431g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 2.8e-10 69.7 89 48.3
BraA09t36915Z Brassica rapa HOM05D003644 ORTHO05D004305 3.7e-10 69.3 155 36.1
AL7G23640 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 3.1e-09 66.2 124 42.7
BcaC06g36690 Brassica carinata HOM05D003644 ORTHO05D004305 7.0e-09 65.1 114 41.2
BraA07t27854Z Brassica rapa HOM05D003644 ORTHO05D004305 1.2e-08 64.3 118 40.7
Solyc07g018370.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 2.0e-08 63.5 114 39.5
C07p01040 Brassica napus HOM05D003644 ORTHO05D004305 3.5e-08 62.8 198 34.3
Rhsim05G0043500 Rhododendron simsii HOM05D003644 ORTHO05D004305 3.5e-08 62.8 128 39.8
HanXRQChr14g0449921 Helianthus annuus HOM05D003644 ORTHO05D004305 1.0e-07 61.2 194 33.5
BcaB03g16807 Brassica carinata HOM05D003644 ORTHO05D004305 1.7e-07 60.5 115 43.5
Zm00001eb156860 Zea mays HOM05D003644 ORTHO05D004305 1.7e-07 60.5 169 34.9
Lsat_1_v5_gn_5_147641 Lactuca sativa HOM05D003644 ORTHO05D004305 2.9e-07 59.7 133 45.9
Eucgr.C01280 Eucalyptus grandis HOM05D003644 ORTHO05D004305 6.6e-07 58.5 200 34.5
Zm00001eb360290 Zea mays HOM05D003644 ORTHO05D004305 1.5e-06 57.4 169 32.5
Ah.09g230900 Amaranthus hybridus HOM05D003644 ORTHO05D004305 3.3e-06 56.2 197 32.0
CARHR236630 Cardamine hirsuta HOM05D003644 ORTHO05D004305 3.3e-06 56.2 69 59.4
Sc08g0007700 Simmondsia chinensis HOM05D003644 ORTHO05D004305 9.5e-06 54.7 162 35.2


User provided reference genes

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