Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024688.2 Cucumis melo HOM05D005514 ORTHO05D006563 2.4e-215 751.9 386 100.0
CsaV3_1G045730 Cucumis sativus L. HOM05D005514 ORTHO05D006563 1.2e-209 733.0 386 96.9
ClCG06G008760 Citrullus lanatus HOM05D005514 ORTHO05D006563 2.8e-179 632.1 524 68.1
Sed0026603 Sechium edule HOM05D005514 ORTHO05D006563 1.6e-158 563.1 451 69.8
Sed0015833 Sechium edule HOM05D005514 ORTHO05D006563 7.4e-148 527.7 390 71.8
QL02p045925 Quercus lobata HOM05D005514 ORTHO05D006563 2.9e-120 436.0 434 56.5
Thecc.09G107100 Theobroma cacao HOM05D005514 ORTHO05D006563 3.8e-120 435.6 393 59.0
CiPaw.03G229100 Carya illinoinensis HOM05D005514 ORTHO05D006563 7.3e-119 431.4 396 59.8
MD02G1042900 Malus domestica HOM05D005514 ORTHO05D006563 2.8e-118 429.5 397 58.7
Sabra06G0124000 Salix brachista HOM05D005514 ORTHO05D006563 1.2e-116 424.1 384 59.1
CiPaw.04G162600 Carya illinoinensis HOM05D005514 ORTHO05D006563 9.8e-116 421.0 395 59.5
Ciclev10008655m.g Citrus clementina HOM05D005514 ORTHO05D006563 3.2e-114 416.0 407 56.8
Eucgr.C01267 Eucalyptus grandis HOM05D005514 ORTHO05D006563 1.2e-113 414.1 397 58.9
Gohir.D08G262600 Gossypium hirsutum HOM05D005514 ORTHO05D006563 1.2e-113 414.1 398 59.3
CANSAT02G0006 Cannabis sativa HOM05D005514 ORTHO05D006563 3.5e-113 412.5 390 56.9
Atru.chr7.1371 Acer truncatum HOM05D005514 ORTHO05D006563 7.8e-113 411.4 409 56.2
RcHm_v2.0_Chr2g0089981 Rosa chinensis HOM05D005514 ORTHO05D006563 3.9e-112 409.1 394 57.4
Duzib168G0165 Durio zibethinus HOM05D005514 ORTHO05D006563 6.2e-110 401.7 392 57.4
Gorai.004G280600 Gossypium raimondii HOM05D005514 ORTHO05D006563 8.0e-110 401.4 397 57.9
Gohir.A08G241800 Gossypium hirsutum HOM05D005514 ORTHO05D006563 9.8e-108 394.4 398 57.8
AUR62010955 Chenopodium quinoa HOM05D005514 ORTHO05D006563 2.9e-107 392.9 396 58.8
Phvul.004G165700 Phaseolus vulgaris HOM05D005514 ORTHO05D006563 3.9e-104 382.5 395 54.9
Ca_25539_v3 Cicer arietinum L. HOM05D005514 ORTHO05D006563 4.7e-102 375.6 406 54.7
Hma1.2p1_1151F.1_g261950 Hydrangea macrophylla HOM05D005514 ORTHO05D006563 6.2e-102 375.2 390 55.9
FvH4_1g04330 Fragaria vesca HOM05D005514 ORTHO05D006563 2.6e-100 369.8 351 57.3
Duzib150G0489 Durio zibethinus HOM05D005514 ORTHO05D006563 3.4e-100 369.4 395 53.9
EL10Ac8g18440 Beta vulgaris HOM05D005514 ORTHO05D006563 5.8e-100 368.6 396 55.6
Oeu002248.1 Olea europaea HOM05D005514 ORTHO05D006563 4.9e-99 365.5 422 51.9
FAN26G2817 Fragaria x ananassa HOM05D005514 ORTHO05D006563 1.3e-96 357.5 375 53.3
Glyma.09G192400 Glycine max HOM05D005514 ORTHO05D006563 3.0e-96 356.3 395 52.4
Potri.018G083100 Populus trichocarpa HOM05D005514 ORTHO05D006563 3.9e-96 355.9 358 55.6
Ah.07g205470 Amaranthus hybridus HOM05D005514 ORTHO05D006563 9.5e-95 351.3 387 55.3
FAN19G0406 Fragaria x ananassa HOM05D005514 ORTHO05D006563 2.8e-94 349.7 375 53.3
Cfa003235 Carpinus fangiana HOM05D005514 ORTHO05D006563 5.2e-93 345.5 327 57.5
Potri.006G160500 Populus trichocarpa HOM05D005514 ORTHO05D006563 2.9e-91 339.7 386 51.6
Dinv36656 Davidia involucrata HOM05D005514 ORTHO05D006563 1.9e-90 337.0 337 54.6
Glyma.07G084500 Glycine max HOM05D005514 ORTHO05D006563 2.4e-90 336.7 356 53.9
CAN.G148.5 Capsicum annuum HOM05D005514 ORTHO05D006563 4.1e-90 335.9 383 52.5
Lalb_Chr22g0352701 Lupinus albus HOM05D005514 ORTHO05D006563 9.2e-90 334.7 397 51.1
Actinidia32673 Actinidia chinensis HOM05D005514 ORTHO05D006563 1.6e-89 334.0 344 57.3
Psat1g044240 Pisum sativum HOM05D005514 ORTHO05D006563 2.7e-89 333.2 419 50.4
Manes.03G023100 Manihot esculenta HOM05D005514 ORTHO05D006563 4.6e-89 332.4 321 56.1
AUR62021464 Chenopodium quinoa HOM05D005514 ORTHO05D006563 6.0e-89 332.0 395 53.2
Hund09218 Selenicereus undatus HOM05D005514 ORTHO05D006563 6.0e-89 332.0 451 47.5
Dinv41624 Davidia involucrata HOM05D005514 ORTHO05D006563 7.8e-89 331.6 324 56.2
Prupe.7G234000 Prunus persica HOM05D005514 ORTHO05D006563 7.8e-89 331.6 319 56.7
VMungo0464G0467 Vigna mungo HOM05D005514 ORTHO05D006563 1.0e-88 331.3 324 56.5
Cpa.g.sc23.79 Carica papaya HOM05D005514 ORTHO05D006563 5.1e-88 328.9 392 49.2
FAN23G0542 Fragaria x ananassa HOM05D005514 ORTHO05D006563 1.9e-87 327.0 321 56.1
Peaxi162Scf00031g00232 Petunia axillaris HOM05D005514 ORTHO05D006563 3.3e-87 326.2 379 50.9
Nitab4.5_0000010g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 1.2e-86 324.3 395 49.6
CSS0000167 Camellia sinensis var. sinensis HOM05D005514 ORTHO05D006563 1.6e-86 323.9 542 40.2
Lalb_Chr24g0397401 Lupinus albus HOM05D005514 ORTHO05D006563 2.1e-86 323.6 325 55.7
Cc06_g09930 Coffea canephora HOM05D005514 ORTHO05D006563 3.6e-86 322.8 322 55.6
arahy.Tifrunner.gnm1.ann1.LW2ZPS Arachis hypogaea HOM05D005514 ORTHO05D006563 1.8e-85 320.5 323 54.5
Medtr6g087890 Medicago truncatula HOM05D005514 ORTHO05D006563 3.1e-85 319.7 388 51.8
Nitab4.5_0000952g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 3.1e-85 319.7 413 47.2
arahy.Tifrunner.gnm1.ann1.7WD3SA Arachis hypogaea HOM05D005514 ORTHO05D006563 5.2e-85 318.9 378 49.7
Lj2g0026530 Lotus japonicus HOM05D005514 ORTHO05D006563 9.0e-85 318.2 446 46.6
TPR.G10049 Trifolium pratense HOM05D005514 ORTHO05D006563 7.1e-82 308.5 433 47.1
MSTRG.10624 Avicennia marina HOM05D005514 ORTHO05D006563 9.3e-82 308.1 383 49.3
TAR383G0343 Trochodendron aralioides HOM05D001777 ORTHO05D001809 1.6e-81 307.4 392 50.3
Actinidia07405 Actinidia chinensis HOM05D005514 ORTHO05D006563 1.1e-79 301.2 394 49.5
Solyc05g018340.4 Solanum lycopersicum HOM05D005514 ORTHO05D006563 1.5e-79 300.8 378 49.2
Sopen05g015140 Solanum pennellii HOM05D005514 ORTHO05D006563 1.5e-79 300.8 378 49.2
MD15G1181700 Malus domestica HOM05D005514 ORTHO05D006563 1.9e-79 300.4 327 52.0
HanXRQChr10g0318661 Helianthus annuus HOM05D005514 ORTHO05D006563 5.6e-79 298.9 412 49.0
TWI23G1143 Tripterygium wilfordii HOM05D005514 ORTHO05D006563 4.8e-78 295.8 350 51.7
vmacro06229 Vaccinium macrocarpon HOM05D005514 ORTHO05D006563 6.2e-78 295.4 335 54.6
Lalb_Chr14g0371621 Lupinus albus HOM05D005514 ORTHO05D006563 9.9e-76 288.1 325 52.3
Sc18g0001310 Simmondsia chinensis HOM05D005514 ORTHO05D006563 8.4e-75 285.0 391 48.3
Nn2g11677 Nelumbo nucifera HOM05D005514 ORTHO05D006563 1.0e-72 278.1 404 46.0
PGR142G2557 Punica granatum HOM05D005514 ORTHO05D006563 6.7e-72 275.4 388 47.2
DCAR_028696 Daucus carota HOM05D005514 ORTHO05D006563 1.8e-69 267.3 406 48.8
ECA234G0189 Erigeron canadensis HOM05D005514 ORTHO05D006563 3.1e-69 266.5 433 45.0
THA.LOC104804022 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 9.9e-68 261.5 401 46.1
TAR624G0612 Trochodendron aralioides HOM05D005514 ORTHO05D006563 1.3e-67 261.2 273 51.6
COL.COLO4_34823 Corchorus olitorius HOM05D005514 ORTHO05D006563 4.9e-67 259.2 320 46.9
Haze_25771 Corylus avellana HOM05D005514 ORTHO05D006563 1.0e-64 251.5 244 55.7
Oeu064593.1 Olea europaea HOM05D005514 ORTHO05D006563 1.8e-64 250.8 349 45.6
PGSC0003DMG400027426 Solanum tuberosum HOM05D005514 ORTHO05D006563 1.8e-64 250.8 309 47.9
THA.LOC104820053 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 8.7e-64 248.4 401 45.9
GSVIVG01015362001 Vitis vinifera HOM05D005514 ORTHO05D006563 2.6e-60 236.9 343 43.4
MBI04_g19180_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 7.6e-60 235.3 324 47.5
Aqoxy7G01583 Aquilegia oxysepala HOM05D005514 ORTHO05D006563 1.1e-58 231.5 481 38.9
MBI14_g08031_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 1.4e-58 231.1 320 47.8
PSO782G4531 Papaver somniferum HOM05D005514 ORTHO05D006563 3.5e-57 226.5 387 42.6
MSTRG.26360 Avicennia marina HOM05D005514 ORTHO05D006563 1.3e-56 224.6 313 43.1
PSO566G0157 Papaver somniferum HOM05D005514 ORTHO05D006563 3.0e-56 223.4 379 43.0
AL7G23470 Arabidopsis lyrata HOM05D005514 ORTHO05D006563 4.8e-54 216.1 397 44.8
CARHR236720 Cardamine hirsuta HOM05D005514 ORTHO05D006563 1.1e-53 214.9 394 43.4
Aa31LG8G17060 Aethionema arabicum HOM05D005514 ORTHO05D006563 2.6e-52 210.3 505 35.0
Thhalv10025603m.g Eutrema salsugineum HOM05D005514 ORTHO05D006563 2.6e-52 210.3 397 43.3
Migut.K00501 Erythranthe guttata HOM05D005514 ORTHO05D006563 5.9e-52 209.1 350 44.3
Sp7g26930 Schrenkiella parvula HOM05D005514 ORTHO05D006563 6.5e-51 205.7 407 39.3
Sabra18G0070900 Salix brachista HOM05D005514 ORTHO05D006563 1.2e-49 201.4 200 51.0
Carub.0007s1165 Capsella rubella HOM05D005514 ORTHO05D006563 3.6e-49 199.9 402 42.5
AT4G28990 Arabidopsis thaliana HOM05D005514 ORTHO05D006563 6.1e-49 199.1 395 42.3
Rhsim03G0240000 Rhododendron simsii HOM05D005514 ORTHO05D006563 3.3e-47 193.4 234 52.6
Lj7A655G38 Lonicera japonica HOM05D005514 ORTHO05D006563 2.2e-46 190.7 236 49.6
BcaNung01339 Brassica carinata HOM05D005514 ORTHO05D006563 4.8e-46 189.5 391 40.7
SEGI_01979 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 2.6e-44 183.7 486 33.5
BcaNung00443 Brassica carinata HOM05D005514 ORTHO05D006563 1.9e-42 177.6 396 37.6
CDE05G2615 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 4.2e-42 176.4 338 39.1
A01p08990 Brassica napus HOM05D001777 ORTHO05D006510 1.2e-41 174.9 386 39.4
Nn3g18098 Nelumbo nucifera HOM05D005514 ORTHO05D006563 2.7e-41 173.7 194 52.1
ATR0315G038 Amborella trichopoda HOM05D005514 ORTHO05D006563 7.9e-41 172.2 326 38.7
C01p10530 Brassica napus HOM05D001777 ORTHO05D006510 1.4e-40 171.4 386 36.3
CDE05G1480 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 2.3e-40 170.6 276 41.3
BolC1t01016H Brassica oleracea HOM05D001777 ORTHO05D006510 3.9e-40 169.9 390 38.2
Lsat_1_v5_gn_5_102941 Lactuca sativa HOM05D005514 ORTHO05D006563 2.4e-37 160.6 251 47.0
BcaC09g51675 Brassica carinata HOM05D005514 ORTHO05D006563 5.0e-35 152.9 347 36.9
BcaNung02893 Brassica carinata HOM05D005514 ORTHO05D006563 1.6e-33 147.9 350 38.6
C07p56560 Brassica napus HOM05D005514 ORTHO05D006563 1.6e-33 147.9 350 38.6
BcaNung00440 Brassica carinata HOM05D005514 ORTHO05D006563 1.0e-32 145.2 351 38.2
Os06g0332900 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 1.3e-30 138.3 274 38.3
Zm00001eb147430 Zea mays HOM05D005514 ORTHO05D006563 3.5e-28 130.2 334 32.9
BolC7t46134H Brassica oleracea HOM05D005514 ORTHO05D006563 7.7e-28 129.0 392 34.4
BraA03t14917Z Brassica rapa HOM05D005514 ORTHO05D006563 6.5e-27 125.9 309 37.5
HPP92_000517 Vanilla planifolia HOM05D005514 ORTHO05D006563 4.2e-26 123.2 293 36.2
SEGI_18875 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 8.0e-25 119.0 355 34.9
Mapoly0001s0121 Marchantia polymorpha HOM05D005514 ORTHO05D006563 5.7e-23 112.8 305 34.4
Os02g0274700 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 7.5e-23 112.5 280 37.9
Pp3c14_23580 Physcomitrium patens HOM05D005514 ORTHO05D006563 1.8e-21 107.8 337 34.4
SGA_v2.0_scaffold92G28280 Striga asiatica HOM05D005514 ORTHO05D006563 3.1e-21 107.1 257 38.1
unitig_0.g2554 Utricularia gibba HOM05D005514 ORTHO05D006563 9.4e-18 95.5 320 33.4
AagrBONN_evm.TU.Sc2ySwM_344.197 Anthoceros agrestis HOM05D005514 ORTHO05D006563 1.7e-11 74.7 168 36.9
MD15G1181500 Malus domestica HOM05D005514 ORTHO05D006563 2.9e-11 73.9 76 59.2
Lsat_1_v5_gn_5_102961 Lactuca sativa HOM05D005514 ORTHO05D006563 8.6e-11 72.4 68 60.3
Oeu064594.1 Olea europaea HOM05D005514 ORTHO05D006563 2.5e-10 70.9 74 56.8
SMO116G0230 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 5.5e-10 69.7 37 73.0
SMO169G0168 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 5.5e-10 69.7 93 46.2
Cc06_g09940 Coffea canephora HOM05D005514 ORTHO05D006563 6.1e-09 66.2 71 62.0
COL.COLO4_34822 Corchorus olitorius HOM05D005514 ORTHO05D006563 1.4e-08 65.1 73 60.3
CBR_g44542 Chara braunii HOM05D005514 ORTHO05D006563 2.6e-07 60.8 216 32.4
Prupe.6G050700 Prunus persica HOM05D002034 ORTHO05D006399 3.7e-06 57.0 43 58.1
GSVIVG01030073001 Vitis vinifera HOM05D000417 ORTHO05D000342 4.9e-06 56.6 43 58.1
Sed0021639 Sechium edule HOM05D002034 ORTHO05D006399 8.3e-06 55.8 49 55.1
Hund18957 Selenicereus undatus HOM05D002034 ORTHO05D006399 8.3e-06 55.8 40 60.0


User provided reference genes

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