Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024664.2 Cucumis melo HOM05D006219 ORTHO05D007562 4.4e-256 887.5 455 100.0
CsaV3_1G045560 Cucumis sativus L. HOM05D006219 ORTHO05D007562 2.3e-233 812.0 455 91.2
ClCG06G009410 Citrullus lanatus HOM05D006219 ORTHO05D007562 1.5e-227 792.7 455 89.5
Sed0012882 Sechium edule HOM05D006219 ORTHO05D007562 1.9e-166 589.7 406 74.9
Prupe.6G348600 Prunus persica HOM05D006219 ORTHO05D007562 4.1e-153 545.4 412 67.5
Manes.09G149100 Manihot esculenta HOM05D006219 ORTHO05D007562 6.9e-153 544.7 455 62.4
FAN02G1274 Fragaria x ananassa HOM05D006219 ORTHO05D007562 5.0e-151 538.5 462 64.3
FAN05G4153 Fragaria x ananassa HOM05D006219 ORTHO05D007562 2.5e-150 536.2 463 64.1
FvH4_6g02280 Fragaria vesca HOM05D006219 ORTHO05D007562 3.2e-150 535.8 437 66.1
Cpa.g.sc162.24 Carica papaya HOM05D006219 ORTHO05D007562 7.2e-150 534.6 458 63.3
FAN05G2712 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.8e-148 530.0 461 63.3
CiPaw.07G078300 Carya illinoinensis HOM05D006219 ORTHO05D007562 2.3e-148 529.6 457 62.6
Thecc.05G275300 Theobroma cacao HOM05D006219 ORTHO05D007562 5.1e-148 528.5 459 63.2
Haze_04459 Corylus avellana HOM05D006219 ORTHO05D007562 6.7e-148 528.1 458 62.0
Cfa006329 Carpinus fangiana HOM05D006219 ORTHO05D007562 8.8e-148 527.7 458 61.4
Potri.013G044900 Populus trichocarpa HOM05D006219 ORTHO05D007562 1.3e-146 523.9 411 66.2
Phvul.L001763 Phaseolus vulgaris HOM05D006219 ORTHO05D007562 3.7e-146 522.3 462 62.1
MD12G1245900 Malus domestica HOM05D006219 ORTHO05D007562 6.3e-146 521.5 461 61.4
FAN09G4845 Fragaria x ananassa HOM05D006219 ORTHO05D007562 8.2e-146 521.2 393 68.4
QL03p031869 Quercus lobata HOM05D006219 ORTHO05D007562 1.4e-145 520.4 422 65.2
QL08p015782 Quercus lobata HOM05D006219 ORTHO05D007562 1.4e-145 520.4 422 64.9
Atru.chr2.897 Acer truncatum HOM05D006219 ORTHO05D007562 3.4e-144 515.8 415 66.0
VMungo0720G3050 Vigna mungo HOM05D006219 ORTHO05D007562 4.5e-144 515.4 432 63.9
TWI36G0216 Tripterygium wilfordii HOM05D006219 ORTHO05D007562 5.9e-144 515.0 438 62.1
Glyma.10G166900 Glycine max HOM05D006219 ORTHO05D007562 7.7e-144 514.6 437 63.2
PGR004G0430 Punica granatum HOM05D006219 ORTHO05D007562 1.3e-143 513.8 411 65.0
Gohir.A13G103800 Gossypium hirsutum HOM05D006219 ORTHO05D007562 1.7e-143 513.5 460 61.7
Gohir.D13G107000 Gossypium hirsutum HOM05D006219 ORTHO05D007562 2.9e-143 512.7 460 62.2
Lj2C39T18 Lonicera japonica HOM05D006219 ORTHO05D007562 2.9e-143 512.7 414 63.8
Duzib128G1627 Durio zibethinus HOM05D006219 ORTHO05D007562 1.1e-142 510.8 464 61.9
TAR633G0272 Trochodendron aralioides HOM05D006219 ORTHO05D007562 1.4e-142 510.4 417 63.5
Gorai.013G120100 Gossypium raimondii HOM05D006219 ORTHO05D007562 1.9e-142 510.0 460 62.0
Sabra13G0041300 Salix brachista HOM05D006219 ORTHO05D007562 1.2e-141 507.3 411 64.0
Dinv06988 Davidia involucrata HOM05D006219 ORTHO05D007562 1.4e-140 503.8 437 63.2
CSS0036761 Camellia sinensis var. sinensis HOM05D006219 ORTHO05D007562 2.6e-139 499.6 396 65.4
Lj5g0004576 Lotus japonicus HOM05D006219 ORTHO05D007562 3.3e-139 499.2 456 59.4
Ca_10007_v3 Cicer arietinum L. HOM05D006219 ORTHO05D007562 9.7e-139 497.7 430 61.2
Sc06g0004060 Simmondsia chinensis HOM05D006219 ORTHO05D007562 1.3e-138 497.3 420 63.6
CANSAT54G2996 Cannabis sativa HOM05D006219 ORTHO05D007562 2.4e-137 493.0 458 58.5
Lalb_Chr06g0168341 Lupinus albus HOM05D006219 ORTHO05D007562 2.9e-135 486.1 418 60.3
Lsat_1_v5_gn_2_107721 Lactuca sativa HOM05D006219 ORTHO05D007562 1.1e-134 484.2 448 59.4
Rhsim05G0175300 Rhododendron simsii HOM05D006219 ORTHO05D007562 1.9e-134 483.4 447 60.0
Aqoxy5G00261 Aquilegia oxysepala HOM05D006219 ORTHO05D007562 1.8e-132 476.9 451 58.1
DCAR_030973 Daucus carota HOM05D006219 ORTHO05D007562 1.3e-130 470.7 415 60.0
Medtr1g079870 Medicago truncatula HOM05D006219 ORTHO05D007562 1.3e-130 470.7 457 57.3
THA.LOC104799246 Tarenaya hassleriana HOM05D006219 ORTHO05D007562 3.1e-129 466.1 460 58.5
Sp2g20170 Schrenkiella parvula HOM05D006219 ORTHO05D007562 1.6e-128 463.8 412 59.5
A06p37950 Brassica napus HOM05D006219 ORTHO05D007562 5.9e-128 461.8 443 57.6
CARHR185150 Cardamine hirsuta HOM05D006219 ORTHO05D007562 1.0e-127 461.1 412 60.4
C07p40330 Brassica napus HOM05D006219 ORTHO05D007562 2.2e-127 459.9 443 57.3
AL6G40560 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 3.8e-127 459.1 412 59.2
BcaNung02093 Brassica carinata HOM05D006219 ORTHO05D007562 5.0e-127 458.8 443 57.6
BolC7t44567H Brassica oleracea HOM05D006219 ORTHO05D007562 5.0e-127 458.8 443 57.6
Thhalv10004236m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 6.5e-127 458.4 412 59.7
FAN14G1966 Fragaria x ananassa HOM05D006219 ORTHO05D007562 6.5e-127 458.4 437 59.0
BraA06t26711Z Brassica rapa HOM05D006219 ORTHO05D007562 1.1e-126 457.6 443 57.1
FAN14G5007 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.5e-126 457.2 437 59.0
BcaNung01728 Brassica carinata HOM05D006219 ORTHO05D007562 4.2e-126 455.7 426 58.2
PSO210G1007 Papaver somniferum HOM05D006219 ORTHO05D007562 9.4e-126 454.5 397 57.9
PSO832G3978 Papaver somniferum HOM05D006219 ORTHO05D007562 2.1e-125 453.4 396 58.1
ECA238G2300 Erigeron canadensis HOM05D006219 ORTHO05D007562 2.7e-125 453.0 402 59.7
Aa31LG11G8710 Aethionema arabicum HOM05D006219 ORTHO05D007562 8.0e-125 451.4 457 55.8
AUR62037607 Chenopodium quinoa HOM05D006219 ORTHO05D007562 5.2e-124 448.7 411 56.4
Actinidia06785 Actinidia chinensis HOM05D006219 ORTHO05D007562 1.2e-123 447.6 457 55.8
Aa31LG5G14970 Aethionema arabicum HOM05D006219 ORTHO05D007562 1.2e-123 447.6 405 59.8
HanXRQChr14g0458931 Helianthus annuus HOM05D006219 ORTHO05D007562 2.6e-123 446.4 472 53.6
AT5G28500 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 3.4e-123 446.0 457 55.6
PGSC0003DMG400028668 Solanum tuberosum HOM05D006219 ORTHO05D007562 4.4e-123 445.7 468 54.3
HanXRQChr07g0201901 Helianthus annuus HOM05D006219 ORTHO05D007562 7.5e-123 444.9 400 59.2
Sopen11g002000 Solanum pennellii HOM05D006219 ORTHO05D007562 3.7e-122 442.6 469 54.6
AT3G04550 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 5.4e-121 438.7 458 54.4
CAN.G582.15 Capsicum annuum HOM05D006219 ORTHO05D007562 5.4e-121 438.7 461 54.0
Solyc11g006060.2 Solanum lycopersicum HOM05D006219 ORTHO05D007562 5.4e-121 438.7 458 55.2
BcaC09g47795 Brassica carinata HOM05D006219 ORTHO05D007562 1.6e-120 437.2 434 54.4
Carub.0003s0370 Capsella rubella HOM05D006219 ORTHO05D007562 1.6e-120 437.2 415 57.6
Carub.0006s2578 Capsella rubella HOM05D006219 ORTHO05D007562 2.7e-120 436.4 411 56.9
Thhalv10020727m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 2.7e-120 436.4 436 55.0
CARHR078740 Cardamine hirsuta HOM05D006219 ORTHO05D007562 1.7e-119 433.7 437 54.0
Ah.06g191950 Amaranthus hybridus HOM05D006219 ORTHO05D007562 2.9e-119 433.0 415 54.2
Peaxi162Scf00120g00021 Petunia axillaris HOM05D006219 ORTHO05D007562 5.0e-119 432.2 393 57.8
BolC1t05743H Brassica oleracea HOM05D006219 ORTHO05D007562 8.6e-119 431.4 439 54.2
BcaB04g21366 Brassica carinata HOM05D006219 ORTHO05D007562 1.9e-118 430.3 448 54.0
DCAR_002178 Daucus carota HOM05D006219 ORTHO05D007562 2.5e-118 429.9 391 60.4
Oeu029038.1 Olea europaea HOM05D006219 ORTHO05D007562 7.2e-118 428.3 431 54.3
BraA01t04521Z Brassica rapa HOM05D006219 ORTHO05D007562 9.5e-118 427.9 434 53.9
CDE05G0955 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 9.5e-118 427.9 434 55.1
EL10Ac4g09057 Beta vulgaris HOM05D006219 ORTHO05D007562 2.8e-117 426.4 381 57.2
AL3G14570 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 6.1e-117 425.2 404 57.4
RcHm_v2.0_Chr3g0450031 Rosa chinensis HOM05D006219 ORTHO05D007562 6.1e-117 425.2 337 65.9
Nitab4.5_0010345g0010 Nicotiana tabacum HOM05D006219 ORTHO05D007562 8.9e-116 421.4 387 57.4
Sp3g03390 Schrenkiella parvula HOM05D006219 ORTHO05D007562 1.2e-115 421.0 434 52.8
Nitab4.5_0000856g0150 Nicotiana tabacum HOM05D006219 ORTHO05D007562 2.0e-115 420.2 387 57.4
A01p40850 Brassica napus HOM05D006219 ORTHO05D007562 9.8e-115 417.9 435 53.3
BNapus_Darmor_BZH_scaffold_78p00860 Brassica napus HOM05D006219 ORTHO05D007562 9.8e-115 417.9 435 53.3
AUR62004874 Chenopodium quinoa HOM05D006219 ORTHO05D007562 2.0e-112 410.2 350 60.9
Psat6g143080 Pisum sativum HOM05D006219 ORTHO05D007562 2.3e-111 406.8 349 59.9
vmacro20002 Vaccinium macrocarpon HOM05D006219 ORTHO05D007562 8.6e-111 404.8 352 61.6
HPP92_025973 Vanilla planifolia HOM05D006219 ORTHO05D007562 1.4e-108 397.5 451 52.3
unitig_748.g8683 Utricularia gibba HOM05D006219 ORTHO05D007562 1.2e-107 394.4 401 55.9
SalBow3G3408 Salvia bowleyana HOM05D006219 ORTHO05D007562 3.4e-107 392.9 398 54.0
Migut.F00810 Erythranthe guttata HOM05D006219 ORTHO05D007562 5.8e-107 392.1 425 52.5
CDE08G1514 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 6.0e-104 382.1 411 52.1
TPR.G10266 Trifolium pratense HOM05D006219 ORTHO05D007562 5.4e-97 359.0 459 47.3
ATR0680G103 Amborella trichopoda HOM05D006219 ORTHO05D007562 1.5e-94 350.9 435 49.4
Nn1g02711 Nelumbo nucifera HOM05D006219 ORTHO05D007562 1.1e-92 344.7 272 65.1
Os10g0445600 Oryza sativa ssp. japonica HOM05D006219 ORTHO05D007562 1.9e-86 323.9 416 45.4
Hma1.2p1_1227F.1_g268570 Hydrangea macrophylla HOM05D006219 ORTHO05D007562 1.2e-85 321.2 344 54.1
SGA_v2.0_scaffold210G42065 Striga asiatica HOM05D006219 ORTHO05D007562 1.5e-83 314.3 341 53.4
MBI18_g37358_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 1.7e-82 310.8 361 50.4
Glyma.20G222200 Glycine max HOM05D006219 ORTHO05D007562 1.1e-81 308.1 259 63.7
Zm00001eb066000 Zea mays HOM05D006219 ORTHO05D007562 2.5e-78 297.0 417 42.9
MD04G1228600 Malus domestica HOM05D006219 ORTHO05D007562 9.0e-76 288.5 232 65.5
MBI18_g32212_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 2.5e-70 270.4 435 45.3
SEGI_10874 Sequoiadendron giganteum HOM05D006219 ORTHO05D007562 2.8e-69 266.9 401 43.1
Eucgr.H04253 Eucalyptus grandis HOM05D006219 ORTHO05D007562 5.4e-65 252.7 280 53.2
Ciclev10027647m.g Citrus clementina HOM05D006219 ORTHO05D007562 1.3e-63 248.1 225 59.1
Lalb_Chr18g0044051 Lupinus albus HOM05D006219 ORTHO05D007562 1.9e-57 227.6 223 55.2
CBR_g29314 Chara braunii HOM05D006219 ORTHO05D007562 2.8e-53 213.8 415 37.6
Mapoly0001s0431 Marchantia polymorpha HOM05D006219 ORTHO05D007562 4.0e-52 209.9 398 35.7
Pp3c18_4320 Physcomitrium patens HOM05D006219 ORTHO05D007562 5.5e-49 199.5 406 34.0
AagrBONN_evm.TU.Sc2ySwM_117.503 Anthoceros agrestis HOM05D006219 ORTHO05D007562 6.7e-47 192.6 404 34.4
Cpa.g.sc162.21 Carica papaya HOM05D000369 ORTHO05D007562 7.2e-25 119.4 112 59.8
Cre06.g308450 Chlamydomonas reinhardtii HOM05D006219 ORTHO05D007562 1.6e-24 118.2 420 28.8
AagrBONN_evm.TU.Sc2ySwM_228.3126 Anthoceros agrestis HOM05D006219 ORTHO05D007562 1.0e-18 99.0 204 33.8
SMO137G0122 Selaginella moellendorffii HOM05D006219 ORTHO05D007562 8.5e-18 95.9 162 37.7
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 1.0e-15 89.0 81 50.6
Pp3c16_6440 Physcomitrium patens HOM05D006219 ORTHO05D007562 2.8e-13 80.9 226 30.1
Mapoly4350s0001 Marchantia polymorpha HOM05D006219 ORTHO05D007562 4.8e-13 80.1 162 34.6
MCO04G553 Micromonas commoda HOM05D006219 ORTHO05D007562 4.1e-12 77.0 414 23.9
TAR362G0073 Trochodendron aralioides HOM05D001652 ORTHO05D001768 9.8e-06 55.8 84 39.3


User provided reference genes

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