Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024661.2 Cucumis melo HOM05D006391 ORTHO05D007767 0.0e+00 1184.9 610 100.0
CsaV3_1G045530 Cucumis sativus L. HOM05D006391 ORTHO05D007767 3.6e-197 692.2 436 87.2
ClCG06G009350 Citrullus lanatus HOM05D006391 ORTHO05D007767 1.1e-161 574.3 346 88.7
Sed0026137 Sechium edule HOM05D006391 ORTHO05D007767 8.7e-151 538.1 436 71.3
Sed0023982 Sechium edule HOM05D006391 ORTHO05D007767 2.3e-143 513.5 436 69.3
Sed0020342 Sechium edule HOM05D006391 ORTHO05D007767 8.2e-141 505.0 439 67.2
Potri.013G044600 Populus trichocarpa HOM05D006391 ORTHO05D007767 1.5e-126 457.6 439 61.7
Sabra13G0041000 Salix brachista HOM05D006391 ORTHO05D007767 5.7e-126 455.7 439 60.8
Lalb_Chr21g0311261 Lupinus albus HOM05D006391 ORTHO05D007767 6.9e-124 448.7 438 59.8
COL.COLO4_15424 Corchorus olitorius HOM05D006391 ORTHO05D007767 9.1e-124 448.4 439 61.3
CiPaw.07G078100 Carya illinoinensis HOM05D006391 ORTHO05D007767 3.4e-123 446.4 440 61.4
RcHm_v2.0_Chr3g0450061 Rosa chinensis HOM05D006391 ORTHO05D007767 3.4e-123 446.4 441 61.0
Gohir.A11G251400 Gossypium hirsutum HOM05D006391 ORTHO05D007767 7.7e-123 445.3 441 60.3
Duzib177G0389 Durio zibethinus HOM05D006391 ORTHO05D007767 1.7e-122 444.1 442 61.5
Glyma.20G222100 Glycine max HOM05D006391 ORTHO05D007767 1.9e-121 440.7 442 60.4
Thecc.05G276300 Theobroma cacao HOM05D006391 ORTHO05D007767 2.5e-121 440.3 437 60.0
Atru.chr2.892 Acer truncatum HOM05D006391 ORTHO05D007767 4.2e-121 439.5 439 58.3
Ca_10006_v3 Cicer arietinum L. HOM05D006391 ORTHO05D007767 4.2e-121 439.5 439 60.6
Medtr1g079830 Medicago truncatula HOM05D006391 ORTHO05D007767 4.2e-121 439.5 437 59.3
Gorai.007G280500 Gossypium raimondii HOM05D006391 ORTHO05D007767 5.5e-121 439.1 442 59.5
FAN05G3173 Fragaria x ananassa HOM05D006391 ORTHO05D007767 3.6e-120 436.4 440 59.8
TAR636G3322 Trochodendron aralioides HOM05D001448 ORTHO05D005781 3.6e-120 436.4 338 70.1
CANSAT54G0018 Cannabis sativa HOM05D006391 ORTHO05D007767 6.1e-120 435.6 439 58.3
FAN09G3726 Fragaria x ananassa HOM05D006391 ORTHO05D007767 7.9e-120 435.3 440 59.8
Nn1g02693 Nelumbo nucifera HOM05D006391 ORTHO05D007767 1.8e-119 434.1 438 57.8
QL03p031977 Quercus lobata HOM05D006391 ORTHO05D007767 1.8e-119 434.1 439 60.4
Lj5g0002062 Lotus japonicus HOM05D006391 ORTHO05D007767 2.3e-119 433.7 437 59.5
FAN05G1344 Fragaria x ananassa HOM05D006391 ORTHO05D007767 3.0e-119 433.3 440 59.5
Eucgr.H04256 Eucalyptus grandis HOM05D006391 ORTHO05D007767 5.1e-119 432.6 444 59.7
Gohir.D11G261800 Gossypium hirsutum HOM05D006391 ORTHO05D007767 6.7e-119 432.2 442 59.0
FAN02G0817 Fragaria x ananassa HOM05D006391 ORTHO05D007767 1.1e-118 431.4 439 59.2
Prupe.6G348300 Prunus persica HOM05D006391 ORTHO05D007767 1.1e-118 431.4 455 56.9
Lj2A39G66 Lonicera japonica HOM05D006391 ORTHO05D007767 1.5e-118 431.0 339 68.7
GSVIVG01036208001 Vitis vinifera HOM05D006391 ORTHO05D007767 2.0e-118 430.6 437 58.1
Actinidia06783 Actinidia chinensis HOM05D006391 ORTHO05D007767 3.3e-118 429.9 439 59.5
Cfa006327 Carpinus fangiana HOM05D006391 ORTHO05D007767 4.4e-118 429.5 441 59.0
Cc02_g09040 Coffea canephora HOM05D006391 ORTHO05D007767 4.4e-118 429.5 438 57.5
Manes.08G137500 Manihot esculenta HOM05D006391 ORTHO05D007767 4.4e-118 429.5 444 59.0
Ciclev10020524m.g Citrus clementina HOM05D006391 ORTHO05D007767 5.7e-118 429.1 439 57.6
TPR.G10279 Trifolium pratense HOM05D006391 ORTHO05D007767 5.7e-118 429.1 437 59.3
VMungo0720G1212 Vigna mungo HOM05D006391 ORTHO05D007767 2.8e-117 426.8 436 58.7
Phvul.L001863 Phaseolus vulgaris HOM05D006391 ORTHO05D007767 1.4e-116 424.5 440 58.6
arahy.Tifrunner.gnm1.ann1.DTTE32 Arachis hypogaea HOM05D006391 ORTHO05D007767 1.8e-116 424.1 443 58.0
Glyma.10G167000 Glycine max HOM05D006391 ORTHO05D007767 7.0e-116 422.2 438 58.9
Dinv14621 Davidia involucrata HOM05D006391 ORTHO05D007767 9.1e-116 421.8 438 58.2
arahy.Tifrunner.gnm1.ann1.9EWV20 Arachis hypogaea HOM05D006391 ORTHO05D007767 1.2e-115 421.4 443 57.6
PGR004G0019 Punica granatum HOM05D006391 ORTHO05D007767 3.5e-115 419.9 454 55.9
PGSC0003DMG400028690 Solanum tuberosum HOM05D006391 ORTHO05D007767 4.5e-115 419.5 440 58.2
Sc09g0004120 Simmondsia chinensis HOM05D006391 ORTHO05D007767 5.9e-115 419.1 446 56.1
Sopen11g002020 Solanum pennellii HOM05D006391 ORTHO05D007767 1.0e-114 418.3 440 57.7
TWI56G1126 Tripterygium wilfordii HOM05D006391 ORTHO05D007767 7.2e-113 412.1 438 57.3
MD12G1245500 Malus domestica HOM05D006391 ORTHO05D007767 2.7e-112 410.2 394 61.4
Nitab4.5_0004928g0020 Nicotiana tabacum HOM05D006391 ORTHO05D007767 3.6e-112 409.8 442 57.2
Solyc11g006080.2 Solanum lycopersicum HOM05D006391 ORTHO05D007767 1.0e-111 408.3 437 57.7
Aa31LG5G14980 Aethionema arabicum HOM05D006391 ORTHO05D007767 3.0e-111 406.8 445 56.4
THA.LOC104827288 Tarenaya hassleriana HOM05D006391 ORTHO05D007767 1.1e-110 404.8 441 55.3
Nitab4.5_0000856g0160 Nicotiana tabacum HOM05D006391 ORTHO05D007767 1.5e-110 404.4 350 65.1
Thhalv10020805m.g Eutrema salsugineum HOM05D006391 ORTHO05D007767 2.0e-110 404.1 444 55.6
Peaxi162Scf00120g00213 Petunia axillaris HOM05D006391 ORTHO05D007767 2.6e-110 403.7 443 55.8
FAN14G3605 Fragaria x ananassa HOM05D006391 ORTHO05D007767 3.3e-110 403.3 443 57.3
FvH4_6g02310 Fragaria vesca HOM05D006391 ORTHO05D007767 4.4e-110 402.9 443 57.3
MBI17_g17506_MAGBIO Magnolia biondii HOM05D006391 ORTHO05D007767 1.3e-109 401.4 435 55.9
FAN14G5548 Fragaria x ananassa HOM05D006391 ORTHO05D007767 3.7e-109 399.8 443 56.9
PSO832G3851 Papaver somniferum HOM05D006391 ORTHO05D007767 4.8e-109 399.4 439 55.1
vmacro20003 Vaccinium macrocarpon HOM05D006391 ORTHO05D007767 6.3e-109 399.1 438 55.7
SalBow3G3308 Salvia bowleyana HOM05D006391 ORTHO05D007767 1.4e-108 397.9 436 56.0
BolC5t34924H Brassica oleracea HOM05D006391 ORTHO05D007767 5.3e-108 396.0 436 55.5
BcaC05g30188 Brassica carinata HOM05D006391 ORTHO05D007767 1.2e-107 394.8 439 56.0
AT3G04560 Arabidopsis thaliana HOM05D006391 ORTHO05D007767 1.6e-107 394.4 446 57.2
HanXRQChr08g0225371 Helianthus annuus HOM05D006391 ORTHO05D007767 2.0e-107 394.0 442 56.1
AL3G14580 Arabidopsis lyrata HOM05D006391 ORTHO05D007767 1.7e-106 391.0 441 56.7
Carub.0003s0371 Capsella rubella HOM05D006391 ORTHO05D007767 2.2e-106 390.6 437 55.4
Sp3g03400 Schrenkiella parvula HOM05D006391 ORTHO05D007767 6.5e-106 389.0 440 54.1
Lsat_1_v5_gn_8_2721 Lactuca sativa HOM05D006391 ORTHO05D007767 1.5e-105 387.9 442 54.1
ECA233G2464 Erigeron canadensis HOM05D006391 ORTHO05D007767 1.9e-105 387.5 442 55.2
BraA05t23038Z Brassica rapa HOM05D006391 ORTHO05D007767 7.2e-105 385.6 440 55.0
PSO210G7203 Papaver somniferum HOM05D006391 ORTHO05D007767 9.4e-105 385.2 438 53.9
AUR62037609 Chenopodium quinoa HOM05D006391 ORTHO05D007767 1.6e-104 384.4 334 65.0
EL10Ac4g09055 Beta vulgaris HOM05D006391 ORTHO05D007767 2.1e-104 384.0 474 51.7
CSS0020771 Camellia sinensis var. sinensis HOM05D006391 ORTHO05D007767 2.1e-104 384.0 331 65.0
CAN.G582.18 Capsicum annuum HOM05D006391 ORTHO05D007767 2.1e-104 384.0 398 58.8
Haze_04461 Corylus avellana HOM05D006391 ORTHO05D007767 2.1e-104 384.0 558 47.7
DCAR_028379 Daucus carota HOM05D006391 ORTHO05D007767 2.1e-104 384.0 332 64.5
AUR62004876 Chenopodium quinoa HOM05D006391 ORTHO05D007767 2.7e-104 383.6 450 54.2
ATR0680G180 Amborella trichopoda HOM05D006391 ORTHO05D007767 1.4e-103 381.3 436 53.2
CARHR078730 Cardamine hirsuta HOM05D006391 ORTHO05D007767 8.8e-103 378.6 442 54.1
Aqoxy5G00275 Aquilegia oxysepala HOM05D006391 ORTHO05D007767 1.7e-101 374.4 439 52.6
Rhsim05G0175400 Rhododendron simsii HOM05D006391 ORTHO05D007767 6.3e-101 372.5 392 56.4
Hund22148 Selenicereus undatus HOM05D006391 ORTHO05D007767 6.3e-101 372.5 385 58.7
Migut.F00812 Erythranthe guttata HOM05D006391 ORTHO05D007767 2.0e-99 367.5 440 52.0
AUR62001083 Chenopodium quinoa HOM05D006391 ORTHO05D007767 2.9e-98 363.6 474 50.8
unitig_32.g11831 Utricularia gibba HOM05D006391 ORTHO05D007767 6.5e-98 362.5 440 52.0
BcaC05g29933 Brassica carinata HOM05D006391 ORTHO05D007767 1.1e-97 361.7 436 52.1
C05p62710 Brassica napus HOM05D006391 ORTHO05D007767 1.9e-97 360.9 436 51.8
A05p42930 Brassica napus HOM05D006391 ORTHO05D007767 4.0e-95 353.2 439 51.7
Ah.04g163310 Amaranthus hybridus HOM05D006391 ORTHO05D007767 5.6e-89 332.8 434 50.5
Os02g0820600 Oryza sativa ssp. japonica HOM05D006391 ORTHO05D007767 5.6e-89 332.8 346 55.5
SGA_v2.0_scaffold243G44310 Striga asiatica HOM05D006391 ORTHO05D007767 8.9e-87 325.5 358 55.0
Cpa.g.sc162.14 Carica papaya HOM05D006391 ORTHO05D007767 2.3e-82 310.8 352 54.8
Zm00001eb259140 Zea mays HOM05D006391 ORTHO05D007767 2.5e-81 307.4 325 55.7
SEGI_17356 Sequoiadendron giganteum HOM05D006391 ORTHO05D007767 4.0e-79 300.1 335 51.6
CDE04G1237 Ceratophyllum demersum HOM05D006391 ORTHO05D007767 2.0e-78 297.7 310 58.1
MD04G1228400 Malus domestica HOM05D006391 ORTHO05D007767 5.4e-76 289.7 266 62.0
Psat6g143040 Pisum sativum HOM05D006391 ORTHO05D007767 4.4e-70 270.0 350 50.6
Pp3c19_8680 Physcomitrium patens HOM05D006391 ORTHO05D007767 2.4e-68 264.2 397 44.1
HPP92_007146 Vanilla planifolia HOM05D006391 ORTHO05D007767 1.0e-66 258.8 263 55.9
Mapoly0044s0074 Marchantia polymorpha HOM05D006391 ORTHO05D007767 7.6e-62 242.7 343 44.0
SMO203G0061 Selaginella moellendorffii HOM05D006391 ORTHO05D007767 9.9e-62 242.3 330 46.1
HPP92_007142 Vanilla planifolia HOM05D006391 ORTHO05D007767 8.6e-58 229.2 342 46.8
Oeu034581.1 Olea europaea HOM05D006391 ORTHO05D007767 2.4e-55 221.1 207 61.8
QL03p032009 Quercus lobata HOM05D006391 ORTHO05D007767 1.6e-48 198.4 264 50.4
CBR_g8309 Chara braunii HOM05D006391 ORTHO05D007767 6.0e-43 179.9 348 36.5
Oeu058337.1 Olea europaea HOM05D006391 ORTHO05D007767 9.6e-41 172.6 134 67.9
SHI23187 Sapria himalayana HOM05D006391 ORTHO05D007767 8.1e-40 169.5 231 48.5
HPP92_007141 Vanilla planifolia HOM05D006391 ORTHO05D007767 1.6e-32 145.2 85 78.8
MCO07G609 Micromonas commoda HOM05D006391 ORTHO05D007767 1.8e-18 98.6 346 29.2
BcaB04g19320 Brassica carinata HOM05D006391 ORTHO05D007767 3.3e-17 94.4 71 66.2
Cre02.g105450 Chlamydomonas reinhardtii HOM05D006391 ORTHO05D007767 4.5e-14 84.0 158 36.1
MD04G1228300 Malus domestica HOM05D006391 ORTHO05D007767 3.2e-12 77.8 175 38.9
BcaC02g11594 Brassica carinata HOM05D006391 ORTHO05D007767 1.0e-10 72.8 67 53.7
BolC5t34511H Brassica oleracea HOM05D004842 ORTHO05D005929 8.8e-10 69.7 47 68.1
BolC3t17856H Brassica oleracea HOM05D004842 ORTHO05D005929 1.5e-09 68.9 47 66.0
PRCOL_00004538 Prasinoderma coloniale HOM05D006391 ORTHO05D007767 2.2e-08 65.1 326 24.5


User provided reference genes

Program Settings