Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024591.2 Cucumis melo HOM05D007014 ORTHO05D008894 5.2e-84 314.3 155 100.0
ClCG02G017580 Citrullus lanatus HOM05D007014 ORTHO05D008894 5.6e-78 294.3 155 92.9
CsaV3_6G013010 Cucumis sativus L. HOM05D007014 ORTHO05D008894 2.9e-74 282.0 169 84.6
Sed0017748 Sechium edule HOM05D007014 ORTHO05D008894 9.5e-70 266.9 155 84.5
Cfa014594 Carpinus fangiana HOM05D007014 ORTHO05D008894 1.1e-65 253.4 154 77.3
Haze_13147 Corylus avellana HOM05D007014 ORTHO05D008894 7.0e-65 250.8 154 76.0
Hma1.2p1_1201F.1_g266700 Hydrangea macrophylla HOM05D007014 ORTHO05D008894 7.0e-65 250.8 148 79.1
QL08p038417 Quercus lobata HOM05D007014 ORTHO05D008894 1.2e-64 250.0 153 77.1
Thecc.02G177900 Theobroma cacao HOM05D007014 ORTHO05D008894 1.7e-63 246.1 157 78.3
Carub.0001s0276 Capsella rubella HOM05D007014 ORTHO05D008894 5.1e-63 244.6 154 73.4
Peaxi162Scf02133g00022 Petunia axillaris HOM05D007014 ORTHO05D008894 5.1e-63 244.6 154 74.0
RcHm_v2.0_Chr6g0277731 Rosa chinensis HOM05D007014 ORTHO05D008894 5.1e-63 244.6 154 73.4
AT1G03650 Arabidopsis thaliana HOM05D007014 ORTHO05D008894 1.5e-62 243.0 154 72.7
CAN.G486.11 Capsicum annuum HOM05D007014 ORTHO05D008894 1.5e-62 243.0 149 75.2
Nitab4.5_0003022g0100 Nicotiana tabacum HOM05D007014 ORTHO05D008894 1.5e-62 243.0 154 73.4
Prupe.3G155400 Prunus persica HOM05D007014 ORTHO05D008894 1.9e-62 242.7 154 74.7
Potri.013G134102 Populus trichocarpa HOM05D007014 ORTHO05D008894 3.3e-62 241.9 153 75.8
PGSC0003DMG400007868 Solanum tuberosum HOM05D007014 ORTHO05D008894 3.3e-62 241.9 149 75.2
Gohir.D13G066000 Gossypium hirsutum HOM05D007014 ORTHO05D008894 5.6e-62 241.1 156 78.2
Gorai.013G075300 Gossypium raimondii HOM05D007014 ORTHO05D008894 5.6e-62 241.1 156 78.2
Sp1g02550 Schrenkiella parvula HOM05D007014 ORTHO05D008894 5.6e-62 241.1 149 74.5
Sabra13G0113800 Salix brachista HOM05D007014 ORTHO05D008894 7.3e-62 240.7 148 77.0
GSVIVG01030373001 Vitis vinifera HOM05D007014 ORTHO05D008894 7.3e-62 240.7 155 76.1
PGSC0003DMG400007866 Solanum tuberosum HOM05D007014 ORTHO05D008894 1.2e-61 240.0 149 74.5
Potri.013G134000 Populus trichocarpa HOM05D007014 ORTHO05D008894 1.6e-61 239.6 153 75.2
CARHR002980 Cardamine hirsuta HOM05D007014 ORTHO05D008894 2.1e-61 239.2 154 72.1
COL.COLO4_07554 Corchorus olitorius HOM05D007014 ORTHO05D008894 2.8e-61 238.8 150 76.7
Dinv02170 Davidia involucrata HOM05D007014 ORTHO05D008894 4.7e-61 238.0 154 74.0
SalBow1G7232 Salvia bowleyana HOM05D007014 ORTHO05D008894 4.7e-61 238.0 148 72.3
MD09G1249800 Malus domestica HOM05D007014 ORTHO05D008894 6.2e-61 237.7 156 73.7
Duzib052G1001 Durio zibethinus HOM05D007014 ORTHO05D008894 1.1e-60 236.9 157 76.4
Sopen12g005310 Solanum pennellii HOM05D007014 ORTHO05D008894 2.3e-60 235.7 149 74.5
BcaC07g42241 Brassica carinata HOM05D007014 ORTHO05D008894 3.1e-60 235.3 154 70.8
CSS0024097 Camellia sinensis var. sinensis HOM05D007014 ORTHO05D008894 3.1e-60 235.3 150 75.3
Aa31LG1G20970 Aethionema arabicum HOM05D007014 ORTHO05D008894 4.0e-60 235.0 154 70.1
Manes.12G090900 Manihot esculenta HOM05D007014 ORTHO05D008894 5.2e-60 234.6 149 74.5
Gohir.A13G056000 Gossypium hirsutum HOM05D007014 ORTHO05D008894 6.8e-60 234.2 150 78.0
Ciclev10022631m.g Citrus clementina HOM05D007014 ORTHO05D008894 8.9e-60 233.8 153 69.9
FAN27G2134 Fragaria x ananassa HOM05D007014 ORTHO05D008894 8.9e-60 233.8 155 71.6
Ciclev10022606m.g Citrus clementina HOM05D007014 ORTHO05D008894 1.2e-59 233.4 153 69.9
Thhalv10008981m.g Eutrema salsugineum HOM05D007014 ORTHO05D008894 1.2e-59 233.4 154 71.4
Solyc12g010680.3 Solanum lycopersicum HOM05D007014 ORTHO05D008894 1.2e-59 233.4 149 73.8
Nn1g06593 Nelumbo nucifera HOM05D007014 ORTHO05D008894 1.5e-59 233.0 152 69.7
Lj8A113T47 Lonicera japonica HOM05D007014 ORTHO05D008894 2.6e-59 232.3 149 72.5
TWI36G0686 Tripterygium wilfordii HOM05D007014 ORTHO05D008894 3.4e-59 231.9 154 70.8
AL1G13150 Arabidopsis lyrata HOM05D007014 ORTHO05D008894 4.4e-59 231.5 154 71.4
Oeu029922.1 Olea europaea HOM05D007014 ORTHO05D008894 4.4e-59 231.5 149 71.1
FvH4_2g15130 Fragaria vesca HOM05D007014 ORTHO05D008894 5.8e-59 231.1 155 70.3
Rhsim04G0068000 Rhododendron simsii HOM05D007014 ORTHO05D008894 9.9e-59 230.3 153 69.9
TAR629G1268 Trochodendron aralioides HOM05D007014 ORTHO05D008894 9.9e-59 230.3 154 72.7
Cc05_g06870 Coffea canephora HOM05D007014 ORTHO05D008894 1.3e-58 229.9 155 71.6
CANSAT78G1474 Cannabis sativa HOM05D007014 ORTHO05D008894 4.9e-58 228.0 154 68.8
BcaC07g42236 Brassica carinata HOM05D007014 ORTHO05D008894 1.4e-57 226.5 148 70.3
Nitab4.5_0002575g0020 Nicotiana tabacum HOM05D007014 ORTHO05D008894 1.4e-57 226.5 171 64.3
FAN15G2141 Fragaria x ananassa HOM05D007014 ORTHO05D008894 4.1e-57 224.9 155 70.3
BcaC07g42250 Brassica carinata HOM05D007014 ORTHO05D008894 1.6e-56 223.0 158 65.8
C08p52830 Brassica napus HOM05D007014 ORTHO05D008894 1.6e-56 223.0 158 65.8
BraA09t42163Z Brassica rapa HOM05D007014 ORTHO05D008894 1.6e-56 223.0 155 67.7
PSO210G2618 Papaver somniferum HOM05D007014 ORTHO05D008894 1.6e-56 223.0 154 70.1
vmacro09278 Vaccinium macrocarpon HOM05D007014 ORTHO05D008894 1.6e-56 223.0 154 66.2
BolC8t52799H Brassica oleracea HOM05D007014 ORTHO05D008894 2.1e-56 222.6 155 68.4
CiPaw.03G175500 Carya illinoinensis HOM05D007014 ORTHO05D008894 2.1e-56 222.6 139 75.5
HanXRQChr17g0553541 Helianthus annuus HOM05D007014 ORTHO05D008894 2.1e-56 222.6 149 69.8
MSTRG.12316 Avicennia marina HOM05D007014 ORTHO05D008894 2.7e-56 222.2 153 69.9
PSO832G4125 Papaver somniferum HOM05D007014 ORTHO05D008894 6.0e-56 221.1 154 70.1
Cpa.g.sc34.144 Carica papaya HOM05D007014 ORTHO05D008894 7.8e-56 220.7 151 68.2
Sc21g0002660 Simmondsia chinensis HOM05D007014 ORTHO05D008894 7.8e-56 220.7 154 68.8
Ca_28202_v3 Cicer arietinum L. HOM05D007014 ORTHO05D008894 1.0e-55 220.3 154 71.4
Glyma.12G111800 Glycine max HOM05D007014 ORTHO05D008894 3.0e-55 218.8 149 70.5
Phvul.011G117200 Phaseolus vulgaris HOM05D007014 ORTHO05D008894 6.6e-55 217.6 153 71.2
THA.LOC104801176 Tarenaya hassleriana HOM05D007014 ORTHO05D008894 8.6e-55 217.2 154 66.2
BcaC07g42259 Brassica carinata HOM05D007014 ORTHO05D008894 1.5e-54 216.5 158 65.2
Lj3g0024821 Lotus japonicus HOM05D007014 ORTHO05D008894 2.5e-54 215.7 154 70.1
TPR.G21768 Trifolium pratense HOM05D007014 ORTHO05D008894 2.5e-54 215.7 154 70.8
EL10Ac9g20747 Beta vulgaris HOM05D007014 ORTHO05D008894 5.6e-54 214.5 151 65.6
Medtr4g046047 Medicago truncatula HOM05D007014 ORTHO05D008894 5.6e-54 214.5 149 70.5
unitig_21.g20401 Utricularia gibba HOM05D007014 ORTHO05D008894 5.6e-54 214.5 153 64.1
arahy.Tifrunner.gnm1.ann1.YPG8JQ Arachis hypogaea HOM05D007014 ORTHO05D008894 7.3e-54 214.2 152 68.4
Aqoxy4G01010 Aquilegia oxysepala HOM05D007014 ORTHO05D008894 2.1e-53 212.6 149 66.4
arahy.Tifrunner.gnm1.ann1.UXPW02 Arachis hypogaea HOM05D007014 ORTHO05D008894 2.1e-53 212.6 152 67.8
SGA_v2.0_scaffold307G48064 Striga asiatica HOM05D007014 ORTHO05D008894 2.8e-53 212.2 147 67.3
arahy.Tifrunner.gnm1.ann1.1ZYA2W Arachis hypogaea HOM05D007014 ORTHO05D008894 3.6e-53 211.8 148 69.6
FAN24G2354 Fragaria x ananassa HOM05D007014 ORTHO05D008894 4.7e-53 211.5 154 66.2
Psat7g157760 Pisum sativum HOM05D007014 ORTHO05D008894 1.8e-52 209.5 140 72.1
Glyma.06G293600 Glycine max HOM05D007014 ORTHO05D008894 2.0e-51 206.1 154 66.2
Migut.H01076 Erythranthe guttata HOM05D007014 ORTHO05D008894 2.6e-51 205.7 149 64.4
MBI17_g43194_MAGBIO Magnolia biondii HOM05D007014 ORTHO05D008894 3.4e-51 205.3 153 66.0
CDE02G4296 Ceratophyllum demersum HOM05D007014 ORTHO05D008894 5.4e-49 198.0 149 62.4
HPP92_002954 Vanilla planifolia HOM05D007014 ORTHO05D008894 2.7e-48 195.7 143 67.1
VMungo1127G0420 Vigna mungo HOM05D007014 ORTHO05D008894 3.5e-48 195.3 178 59.0
arahy.Tifrunner.gnm1.ann1.THUB96 Arachis hypogaea HOM05D007014 ORTHO05D008894 1.7e-47 193.0 137 68.6
ATR0680G283 Amborella trichopoda HOM05D007014 ORTHO05D008894 2.3e-47 192.6 152 59.2
Zm00001eb044470 Zea mays HOM05D007014 ORTHO05D008894 5.6e-46 188.0 153 60.1
Lsat_1_v5_gn_8_133041 Lactuca sativa HOM05D007014 ORTHO05D008894 7.3e-46 187.6 149 58.4
TWI36G1550 Tripterygium wilfordii HOM05D007014 ORTHO05D008894 4.8e-45 184.9 149 57.7
ECA233G3399 Erigeron canadensis HOM05D007880 ORTHO05D003386 3.1e-44 182.2 133 62.4
Zm00001eb044400 Zea mays HOM05D007014 ORTHO05D008894 4.0e-44 181.8 153 59.5
C08p52730 Brassica napus HOM05D007014 ORTHO05D008894 1.1e-36 157.1 108 69.4
Os10g0500400 Oryza sativa ssp. japonica HOM05D007014 ORTHO05D008894 1.4e-36 156.8 166 48.8
Actinidia30478 Actinidia chinensis HOM05D007014 ORTHO05D008894 1.8e-36 156.4 96 77.1
A09p68280 Brassica napus HOM05D001041 ORTHO05D000846 4.0e-36 155.2 106 69.8
Mapoly0101s0002 Marchantia polymorpha HOM05D007014 ORTHO05D008894 6.9e-36 154.5 148 53.4
Lalb_Chr01g0005301 Lupinus albus HOM05D007014 ORTHO05D008894 2.4e-33 146.0 89 76.4
Lsat_1_v5_gn_8_132641 Lactuca sativa HOM05D007014 ORTHO05D008894 5.1e-31 138.3 89 73.0
AagrBONN_evm.TU.Sc2ySwM_344.4393 Anthoceros agrestis HOM05D007014 ORTHO05D008894 8.7e-31 137.5 160 46.9
Ciclev10023600m.g Citrus clementina HOM05D007014 ORTHO05D008894 2.6e-27 125.9 80 70.0
Sabra11G0072100 Salix brachista HOM05D000036 ORTHO05D000095 3.4e-27 125.6 85 70.6
Sabra15G0066900 Salix brachista HOM05D000036 ORTHO05D000095 3.4e-27 125.6 85 70.6
MELO3C013609.2 Cucumis melo HOM05D007014 ORTHO05D008894 6.5e-26 121.3 70 87.1
QL12p004320 Quercus lobata HOM05D007014 ORTHO05D008894 1.4e-25 120.2 75 73.3
Sabra13G0113700 Salix brachista HOM05D000264 ORTHO05D000152 1.8e-23 113.2 81 69.1
Hund01169 Selenicereus undatus HOM05D007014 ORTHO05D008894 3.3e-22 109.0 77 64.9
DCAR_013001 Daucus carota HOM05D007014 ORTHO05D008894 3.1e-20 102.4 86 60.5
AUR62037369 Chenopodium quinoa HOM05D007014 ORTHO05D008894 3.2e-17 92.4 67 64.2
PRCOL_00005877 Prasinoderma coloniale HOM05D007014 ORTHO05D008894 3.3e-14 82.4 95 44.2
SalBow1G7442 Salvia bowleyana HOM05D007014 ORTHO05D008894 3.1e-12 75.9 49 61.2
Cre17.g705950 Chlamydomonas reinhardtii HOM05D007014 ORTHO05D008894 2.1e-08 63.2 129 32.6
Pp3c2_27490 Physcomitrium patens HOM05D007014 ORTHO05D008894 4.6e-08 62.0 79 45.6
Hund03009 Selenicereus undatus HOM05D004398 ORTHO05D005268 5.1e-07 58.5 73 39.7
Peaxi162Scf00251g01121 Petunia axillaris HOM05D004398 ORTHO05D005268 1.1e-06 57.4 66 42.4
Nitab4.5_0000508g0250 Nicotiana tabacum HOM05D004398 ORTHO05D005268 3.3e-06 55.8 66 40.9
Gorai.013G110600 Gossypium raimondii HOM05D004398 ORTHO05D005268 4.3e-06 55.5 63 42.9
Nn2g11907 Nelumbo nucifera HOM05D004398 ORTHO05D005268 4.3e-06 55.5 72 37.5
MD15G1118400 Malus domestica HOM05D004398 ORTHO05D005268 5.7e-06 55.1 66 39.4
Nitab4.5_0002339g0050 Nicotiana tabacum HOM05D004398 ORTHO05D005268 5.7e-06 55.1 66 42.4
Phvul.008G289800 Phaseolus vulgaris HOM05D004398 ORTHO05D005268 5.7e-06 55.1 66 39.4
VMungo0647G1556 Vigna mungo HOM05D004398 ORTHO05D005268 5.7e-06 55.1 66 39.4
ClCG08G013040 Citrullus lanatus HOM05D004398 ORTHO05D005268 9.7e-06 54.3 71 38.0
MELO3C011228.2 Cucumis melo HOM05D004398 ORTHO05D005268 9.7e-06 54.3 71 38.0
THA.LOC104826588 Tarenaya hassleriana HOM05D004023 ORTHO05D004681 9.7e-06 54.3 78 35.9
TWI63G1039 Tripterygium wilfordii HOM05D004398 ORTHO05D005268 9.7e-06 54.3 66 39.4


User provided reference genes

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