Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024586.2 Cucumis melo HOM05D003943 ORTHO05D004753 2.0e-155 552.4 278 100.0
CsaV3_6G041100 Cucumis sativus L. HOM05D003943 ORTHO05D004753 4.0e-143 511.5 261 98.5
ClCG01G015010 Citrullus lanatus HOM05D003943 ORTHO05D004753 1.7e-141 506.1 261 96.6
CiPaw.10G017400 Carya illinoinensis HOM05D003943 ORTHO05D004753 7.0e-140 500.7 261 95.8
Sed0023950 Sechium edule HOM05D003943 ORTHO05D004753 7.0e-140 500.7 261 95.4
Sed0024685 Sechium edule HOM05D003943 ORTHO05D004753 1.6e-139 499.6 261 95.0
TWI77G0554 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 1.7e-138 496.1 261 95.0
Dinv20358 Davidia involucrata HOM05D003943 ORTHO05D004753 2.3e-138 495.7 261 93.5
Nn2g14305 Nelumbo nucifera HOM05D003943 ORTHO05D004753 2.3e-138 495.7 261 94.3
TWI74G1172 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 5.0e-138 494.6 261 94.6
Lsat_1_v5_gn_4_88760 Lactuca sativa HOM05D003943 ORTHO05D004753 6.6e-138 494.2 261 94.3
TAR623G0676 Trochodendron aralioides HOM05D003943 ORTHO05D004753 8.6e-138 493.8 261 92.7
Lsat_1_v5_gn_6_32361 Lactuca sativa HOM05D003943 ORTHO05D004753 1.1e-137 493.4 260 94.6
MSTRG.10894 Avicennia marina HOM05D003943 ORTHO05D004753 1.5e-137 493.0 261 92.7
Oeu049654.1 Olea europaea HOM05D003943 ORTHO05D004753 1.5e-137 493.0 261 93.5
Eucgr.K02620 Eucalyptus grandis HOM05D003943 ORTHO05D004753 1.9e-137 492.7 264 92.4
unitig_32.g11085 Utricularia gibba HOM05D003943 ORTHO05D004753 2.5e-137 492.3 260 93.5
Ciclev10012509m.g Citrus clementina HOM05D003943 ORTHO05D004753 3.3e-137 491.9 261 94.3
Haze_03432 Corylus avellana HOM05D003943 ORTHO05D004753 3.3e-137 491.9 262 93.5
Manes.01G025400 Manihot esculenta HOM05D003943 ORTHO05D004753 3.3e-137 491.9 261 93.5
TAR633G0404 Trochodendron aralioides HOM05D003943 ORTHO05D004753 3.3e-137 491.9 261 92.7
Oeu039454.1 Olea europaea HOM05D003943 ORTHO05D004753 4.3e-137 491.5 263 93.2
CDE10G1025 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 5.6e-137 491.1 261 93.5
Manes.08G033500 Manihot esculenta HOM05D003943 ORTHO05D004753 7.3e-137 490.7 261 93.1
Prupe.4G241300 Prunus persica HOM05D003943 ORTHO05D004753 9.5e-137 490.3 261 93.1
Atru.chr8.1362 Acer truncatum HOM05D003943 ORTHO05D004753 1.2e-136 490.0 261 93.9
Haze_20185 Corylus avellana HOM05D003943 ORTHO05D004753 1.2e-136 490.0 261 93.5
Rhsim08G0248000 Rhododendron simsii HOM05D003943 ORTHO05D004753 1.2e-136 490.0 264 90.9
CSS0000599 Camellia sinensis var. sinensis HOM05D003943 ORTHO05D004753 1.6e-136 489.6 261 94.3
PGR004G2105 Punica granatum HOM05D003943 ORTHO05D004753 1.6e-136 489.6 261 92.7
PGR142G4032 Punica granatum HOM05D003943 ORTHO05D004753 1.6e-136 489.6 261 92.7
Sabra16G0070600 Salix brachista HOM05D003943 ORTHO05D004753 1.6e-136 489.6 261 93.9
Sabra16G0072800 Salix brachista HOM05D003943 ORTHO05D004753 1.6e-136 489.6 261 93.9
Sopen09g036280 Solanum pennellii HOM05D003943 ORTHO05D004753 1.6e-136 489.6 261 94.3
GSVIVG01011153001 Vitis vinifera HOM05D003943 ORTHO05D004753 1.6e-136 489.6 260 94.2
Actinidia38793 Actinidia chinensis HOM05D003943 ORTHO05D004753 2.8e-136 488.8 261 93.1
Lj6A21G25 Lonicera japonica HOM05D003943 ORTHO05D004753 2.8e-136 488.8 261 92.3
Lj6A3G40 Lonicera japonica HOM05D003943 ORTHO05D004753 4.7e-136 488.0 260 92.7
Potri.016G070400 Populus trichocarpa HOM05D003943 ORTHO05D004753 4.7e-136 488.0 261 93.1
PGSC0003DMG400021625 Solanum tuberosum HOM05D003943 ORTHO05D004753 4.7e-136 488.0 261 93.9
THA.LOC104826802 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 6.1e-136 487.6 261 93.1
Atru.chr12.911 Acer truncatum HOM05D003943 ORTHO05D004753 8.0e-136 487.3 261 93.1
Actinidia21868 Actinidia chinensis HOM05D003943 ORTHO05D004753 8.0e-136 487.3 261 92.3
Cpa.g.sc104.32 Carica papaya HOM05D003943 ORTHO05D004753 2.3e-135 485.7 261 92.7
Potri.006G203400 Populus trichocarpa HOM05D003943 ORTHO05D004753 3.0e-135 485.3 261 93.1
Migut.I01176 Erythranthe guttata HOM05D003943 ORTHO05D004753 4.0e-135 485.0 261 91.2
CANSAT64G2459 Cannabis sativa HOM05D003943 ORTHO05D004753 5.2e-135 484.6 261 91.2
Cfa010504 Carpinus fangiana HOM05D003943 ORTHO05D004753 6.8e-135 484.2 261 92.0
Gohir.D01G191300 Gossypium hirsutum HOM05D003943 ORTHO05D004753 6.8e-135 484.2 261 90.8
Gorai.002G235200 Gossypium raimondii HOM05D003943 ORTHO05D004753 6.8e-135 484.2 261 90.8
Hma1.2p1_1104F.1_g257380 Hydrangea macrophylla HOM05D003943 ORTHO05D004753 8.9e-135 483.8 259 93.1
vmacro18760 Vaccinium macrocarpon HOM05D003943 ORTHO05D004753 8.9e-135 483.8 265 90.2
Gohir.A09G134200 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.2e-134 483.4 261 90.8
Gorai.006G149400 Gossypium raimondii HOM05D003943 ORTHO05D004753 1.2e-134 483.4 261 90.8
RcHm_v2.0_Chr2g0122251 Rosa chinensis HOM05D003943 ORTHO05D004753 1.2e-134 483.4 261 91.6
RcHm_v2.0_Chr4g0409741 Rosa chinensis HOM05D003943 ORTHO05D004753 1.2e-134 483.4 261 91.6
THA.LOC104809953 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 1.2e-134 483.4 261 92.3
HanXRQChr09g0277391 Helianthus annuus HOM05D003943 ORTHO05D004753 2.0e-134 482.6 261 92.7
FvH4_1g24730 Fragaria vesca HOM05D003943 ORTHO05D004753 3.4e-134 481.9 261 91.2
FvH4_1g24810 Fragaria vesca HOM05D003943 ORTHO05D004753 3.4e-134 481.9 261 91.2
FAN19G3070 Fragaria x ananassa HOM05D003943 ORTHO05D004753 3.4e-134 481.9 261 91.2
HanXRQChr17g0533251 Helianthus annuus HOM05D003943 ORTHO05D004753 4.4e-134 481.5 261 92.3
COL.COLO4_29575 Corchorus olitorius HOM05D003943 ORTHO05D004753 5.8e-134 481.1 261 91.6
Hund10875 Selenicereus undatus HOM05D003943 ORTHO05D004753 5.8e-134 481.1 261 92.3
Gohir.A01G201400 Gossypium hirsutum HOM05D003943 ORTHO05D004753 7.5e-134 480.7 261 90.4
QL07p036748 Quercus lobata HOM05D003943 ORTHO05D004753 7.5e-134 480.7 260 91.5
Cc04_g00390 Coffea canephora HOM05D003943 ORTHO05D004753 9.8e-134 480.3 269 89.2
Duzib093G1950 Durio zibethinus HOM05D003943 ORTHO05D004753 2.9e-133 478.8 261 90.4
MD05G1235300 Malus domestica HOM05D003943 ORTHO05D004753 2.9e-133 478.8 261 90.4
Thecc.05G104300 Theobroma cacao HOM05D003943 ORTHO05D004753 2.9e-133 478.8 261 90.4
ATR0772G207 Amborella trichopoda HOM05D003943 ORTHO05D004753 4.9e-133 478.0 261 90.0
MD10G1211300 Malus domestica HOM05D003943 ORTHO05D004753 6.4e-133 477.6 261 90.4
SalBow6G5742 Salvia bowleyana HOM05D003943 ORTHO05D004753 8.3e-133 477.2 261 90.0
Glyma.02G196900 Glycine max HOM05D003943 ORTHO05D004753 1.4e-132 476.5 261 90.4
Phvul.010G103000 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 1.4e-132 476.5 261 90.4
Aa31sc52G210 Aethionema arabicum HOM05D003943 ORTHO05D004753 3.2e-132 475.3 261 90.4
arahy.Tifrunner.gnm1.ann1.07MWYB Arachis hypogaea HOM05D003943 ORTHO05D004753 3.2e-132 475.3 261 90.0
arahy.Tifrunner.gnm1.ann1.T05T6P Arachis hypogaea HOM05D003943 ORTHO05D004753 3.2e-132 475.3 261 90.0
Glyma.10G002300 Glycine max HOM05D003943 ORTHO05D004753 7.0e-132 474.2 261 89.7
Phvul.007G268100 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 7.0e-132 474.2 261 90.0
ECA233G4676 Erigeron canadensis HOM05D003943 ORTHO05D004753 9.2e-132 473.8 261 90.4
VMungo0331G0074 Vigna mungo HOM05D003943 ORTHO05D004753 1.2e-131 473.4 261 89.7
VMungo0720G1310 Vigna mungo HOM05D003943 ORTHO05D004753 1.2e-131 473.4 261 89.7
Glyma.10G081400 Glycine max HOM05D003943 ORTHO05D004753 1.6e-131 473.0 261 89.3
Sabra06G0156600 Salix brachista HOM05D003943 ORTHO05D004753 2.7e-131 472.2 285 85.3
HPP92_002146 Vanilla planifolia HOM05D003943 ORTHO05D004753 3.5e-131 471.9 256 90.2
Lalb_Chr02g0144091 Lupinus albus HOM05D003943 ORTHO05D004753 4.6e-131 471.5 261 89.7
Nitab4.5_0008073g0030 Nicotiana tabacum HOM05D003943 ORTHO05D004753 1.0e-130 470.3 261 90.8
Ca_16636_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 1.3e-130 469.9 261 89.3
Sp6g36490 Schrenkiella parvula HOM05D003943 ORTHO05D004753 1.3e-130 469.9 261 89.3
AT5G06360 Arabidopsis thaliana HOM05D003943 ORTHO05D004753 2.3e-130 469.2 261 89.3
Lalb_Chr11g0067891 Lupinus albus HOM05D003943 ORTHO05D004753 2.3e-130 469.2 261 89.3
Lj1g0010263 Lotus japonicus HOM05D003943 ORTHO05D004753 1.1e-129 466.8 261 87.7
Ca_11700_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 1.5e-129 466.5 261 89.7
PSO384G4082 Papaver somniferum HOM05D003943 ORTHO05D004753 1.5e-129 466.5 261 87.7
Aqoxy1G00659 Aquilegia oxysepala HOM05D003943 ORTHO05D004753 1.9e-129 466.1 261 88.1
Psat6g114680 Pisum sativum HOM05D003943 ORTHO05D004753 1.9e-129 466.1 261 88.9
PSO339G3654 Papaver somniferum HOM05D003943 ORTHO05D004753 2.5e-129 465.7 261 87.4
Peaxi162Scf00286g00330 Petunia axillaris HOM05D003943 ORTHO05D004753 2.5e-129 465.7 264 89.0
Pp3c7_2280 Physcomitrium patens HOM05D003943 ORTHO05D004753 3.3e-129 465.3 261 87.0
Mapoly0020s0123 Marchantia polymorpha HOM05D003943 ORTHO05D004753 7.3e-129 464.2 261 87.7
SGA_v2.0_scaffold71G24009 Striga asiatica HOM05D003943 ORTHO05D004753 9.5e-129 463.8 261 88.1
SMO367G0573 Selaginella moellendorffii HOM05D003943 ORTHO05D004753 2.1e-128 462.6 261 85.8
C02p02670 Brassica napus HOM05D003943 ORTHO05D004753 2.8e-128 462.2 261 88.1
C09p70420 Brassica napus HOM05D003943 ORTHO05D004753 2.8e-128 462.2 260 88.5
BolC2t06233H Brassica oleracea HOM05D003943 ORTHO05D004753 2.8e-128 462.2 261 88.1
BolC9t59788H Brassica oleracea HOM05D003943 ORTHO05D004753 2.8e-128 462.2 260 88.5
Thhalv10014439m.g Eutrema salsugineum HOM05D003943 ORTHO05D004753 2.8e-128 462.2 261 88.1
FAN23G0735 Fragaria x ananassa HOM05D003943 ORTHO05D004753 2.8e-128 462.2 277 84.8
AL6G16440 Arabidopsis lyrata HOM05D003943 ORTHO05D004753 3.6e-128 461.8 261 88.5
BcaB05g21673 Brassica carinata HOM05D003943 ORTHO05D004753 3.6e-128 461.8 261 87.7
BcaC03g13169 Brassica carinata HOM05D003943 ORTHO05D004753 4.7e-128 461.5 261 87.7
CARHR207110 Cardamine hirsuta HOM05D003943 ORTHO05D004753 8.0e-128 460.7 261 86.6
BraA02t04878Z Brassica rapa HOM05D003943 ORTHO05D004753 1.4e-127 459.9 260 88.1
TPR.G5876 Trifolium pratense HOM05D003943 ORTHO05D004753 1.8e-127 459.5 261 89.3
Carub.0006s0525 Capsella rubella HOM05D003943 ORTHO05D004753 2.3e-127 459.1 261 88.1
A10p30010 Brassica napus HOM05D003943 ORTHO05D004753 3.1e-127 458.8 259 88.4
BraA10t45041Z Brassica rapa HOM05D003943 ORTHO05D004753 3.1e-127 458.8 259 88.4
EL10Ac5g12966 Beta vulgaris HOM05D003943 ORTHO05D004753 4.0e-127 458.4 260 88.8
AagrBONN_evm.TU.Sc2ySwM_369.90 Anthoceros agrestis HOM05D003943 ORTHO05D004753 5.2e-127 458.0 261 85.1
Medtr3g088865 Medicago truncatula HOM05D003943 ORTHO05D004753 3.4e-126 455.3 261 86.6
AUR62036383 Chenopodium quinoa HOM05D003943 ORTHO05D004753 4.4e-126 454.9 261 87.0
CiPaw.09G020900 Carya illinoinensis HOM05D003943 ORTHO05D004753 2.2e-125 452.6 240 93.8
Ah.12g059190 Amaranthus hybridus HOM05D003943 ORTHO05D004753 5.4e-124 448.0 261 85.4
AUR62030745 Chenopodium quinoa HOM05D003943 ORTHO05D004753 5.4e-124 448.0 256 86.7
CBR_g12036 Chara braunii HOM05D003943 ORTHO05D004753 9.2e-124 447.2 261 83.5
Medtr0508s0010 Medicago truncatula HOM05D003943 ORTHO05D004753 3.5e-123 445.3 261 85.8
Lj2g0010046 Lotus japonicus HOM05D003943 ORTHO05D004753 3.0e-122 442.2 261 85.1
TPR.G2813 Trifolium pratense HOM05D003943 ORTHO05D004753 3.9e-122 441.8 276 83.0
FAN19G1372 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.1e-121 440.3 241 90.5
FAN28G2380 Fragaria x ananassa HOM05D003943 ORTHO05D004753 3.3e-121 438.7 241 90.0
Os07g0673100 Oryza sativa ssp. japonica HOM05D003943 ORTHO05D004753 2.8e-120 435.6 261 83.5
Zm00001eb111290 Zea mays HOM05D003943 ORTHO05D004753 4.1e-116 421.8 261 80.5
Zm00001eb330440 Zea mays HOM05D003943 ORTHO05D004753 4.1e-116 421.8 261 80.5
Gohir.D09G130700 Gossypium hirsutum HOM05D003943 ORTHO05D004753 2.1e-115 419.5 261 82.4
MCO03G138 Micromonas commoda HOM05D003943 ORTHO05D004753 3.9e-114 415.2 261 74.7
PGSC0003DMG400029099 Solanum tuberosum HOM05D003943 ORTHO05D004753 1.1e-113 413.7 261 82.8
Cre12.g507300 Chlamydomonas reinhardtii HOM05D003943 ORTHO05D004753 1.9e-113 412.9 261 77.8
PRCOL_00000915 Prasinoderma coloniale HOM05D003943 ORTHO05D004753 5.6e-113 411.4 261 78.5
AagrBONN_evm.TU.Sc2ySwM_340.394 Anthoceros agrestis HOM05D003943 ORTHO05D004753 2.8e-112 409.1 266 78.2
Dinv37798 Davidia involucrata HOM05D003943 ORTHO05D004753 4.0e-111 405.2 213 92.5
Rhsim05G0206200 Rhododendron simsii HOM05D003943 ORTHO05D004753 1.2e-110 403.7 261 80.1
FAN26G0481 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.9e-108 396.4 337 64.1
DCAR_016668 Daucus carota HOM05D003943 ORTHO05D004753 5.4e-108 394.8 254 79.1
Sc14g0006610 Simmondsia chinensis HOM05D003943 ORTHO05D004753 1.6e-107 393.3 222 88.3
DCAR_017903 Daucus carota HOM05D003943 ORTHO05D004753 4.6e-107 391.7 241 81.3
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 7.8e-107 391.0 309 69.9
unitig_748.g7832 Utricularia gibba HOM05D003943 ORTHO05D004753 5.1e-106 388.3 201 93.0
SEGI_04875 Sequoiadendron giganteum HOM05D003943 ORTHO05D004753 1.2e-99 367.1 195 89.7
Aa31LG3G5080 Aethionema arabicum HOM05D003943 ORTHO05D004753 1.6e-99 366.7 200 90.5
Nitab4.5_0003291g0080 Nicotiana tabacum HOM05D003943 ORTHO05D004753 6.2e-96 354.8 256 75.4
Haze_27191 Corylus avellana HOM05D003943 ORTHO05D004753 1.6e-91 340.1 260 65.0
FAN23G1436 Fragaria x ananassa HOM05D003943 ORTHO05D004753 5.6e-89 331.6 177 89.8
Peaxi162Scf01149g00220 Petunia axillaris HOM05D003943 ORTHO05D004753 1.9e-81 306.6 161 91.3
Cfa024104 Carpinus fangiana HOM05D003943 ORTHO05D123184 3.1e-71 272.7 229 59.4
TPR.G6300 Trifolium pratense HOM05D003943 ORTHO05D004753 5.5e-68 261.9 240 60.0
CDE10G0110 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 6.5e-61 238.4 135 88.9
BcaC06g32370 Brassica carinata HOM05D003943 ORTHO05D004753 5.1e-58 228.8 142 83.1
CDE10G0220 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 6.7e-58 228.4 113 97.3
BcaNung06320 Brassica carinata HOM05D003943 ORTHO05D004753 2.0e-57 226.9 143 81.8
SHI12410 Sapria himalayana HOM05D003943 ORTHO05D004753 1.7e-48 197.2 98 93.9
RcHm_v2.0_Chr7g0216551 Rosa chinensis HOM05D003943 ORTHO05D004753 3.5e-46 189.5 271 48.3
Lsat_1_v5_gn_8_162181 Lactuca sativa HOM05D003943 ORTHO05D004753 9.4e-44 181.4 109 85.3
Duzib106G1686 Durio zibethinus HOM05D003943 ORTHO05D004753 7.5e-41 171.8 196 51.5
RcHm_v2.0_Chr7g0216591 Rosa chinensis HOM05D003943 ORTHO05D004753 1.8e-39 167.2 108 77.8
EL10Ac3g06422 Beta vulgaris HOM05D003943 ORTHO05D004753 7.0e-39 165.2 135 65.9
HanXRQChr03g0072971 Helianthus annuus HOM05D003943 ORTHO05D004753 5.9e-38 162.2 92 85.9
Lj9C540G13 Lonicera japonica HOM05D003943 ORTHO05D004753 4.2e-36 156.0 195 48.2
BcaC01g01015 Brassica carinata HOM05D003943 ORTHO05D004753 1.6e-35 154.1 100 81.0
SHI12413 Sapria himalayana HOM05D003943 ORTHO05D004753 2.7e-30 136.7 81 85.2
Lsat_1_v5_gn_6_65181 Lactuca sativa HOM05D003943 ORTHO05D000236 1.0e-29 134.8 92 77.2
Actinidia21636 Actinidia chinensis HOM05D003943 ORTHO05D004753 7.5e-25 118.6 111 60.4
SHI12416 Sapria himalayana HOM05D001600 ORTHO05D001502 6.6e-21 105.5 64 84.4
RcHm_v2.0_Chr7g0216581 Rosa chinensis HOM05D003943 ORTHO05D004753 7.0e-15 85.5 81 59.3
SHI17182 Sapria himalayana HOM05D000004 ORTHO05D367797 1.1e-10 71.6 56 69.6
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 1.8e-10 70.9 59 62.7
SHI30650 Sapria himalayana HOM05D004596 ORTHO05D005853 7.5e-09 65.5 66 57.6
SHI32256 Sapria himalayana HOM05D003943 ORTHO05D001502 1.3e-08 64.7 35 85.7
Nitab4.5_0006519g0020 Nicotiana tabacum HOM05D000032 ORTHO05D005217 2.9e-08 63.5 52 67.3
BcaC05g26689 Brassica carinata HOM05D003943 ORTHO05D004753 6.4e-08 62.4 38 76.3
C03p87270 Brassica napus HOM05D000836 ORTHO05D000709 6.4e-08 62.4 44 75.0
C04p30500 Brassica napus HOM05D002284 ORTHO05D033292 1.4e-07 61.2 34 85.3
BolC4t24585H Brassica oleracea HOM05D002284 ORTHO05D033292 1.2e-06 58.2 34 82.4


User provided reference genes

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