Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024557.2 Cucumis melo HOM05D007282 ORTHO05D009214 2.0e-112 409.1 202 100.0
CsaV3_6G040780 Cucumis sativus L. HOM05D007282 ORTHO05D009214 8.2e-106 387.1 202 95.0
ClCG04G010160 Citrullus lanatus HOM05D007282 ORTHO05D009214 7.0e-97 357.5 202 89.6
Sed0020389 Sechium edule HOM05D007282 ORTHO05D009214 1.0e-79 300.4 202 75.7
Nn6g34828 Nelumbo nucifera HOM05D007282 ORTHO05D009214 4.3e-62 241.9 182 69.8
Gohir.D09G133600 Gossypium hirsutum HOM05D007282 ORTHO05D009214 1.5e-59 233.4 156 75.6
Gorai.006G153100 Gossypium raimondii HOM05D007282 ORTHO05D009214 2.6e-59 232.6 156 75.0
Thecc.05G094100 Theobroma cacao HOM05D007282 ORTHO05D009214 7.5e-59 231.1 180 65.6
Dinv21175 Davidia involucrata HOM05D007282 ORTHO05D009214 1.3e-58 230.3 198 60.6
Gohir.A09G141100 Gossypium hirsutum HOM05D007282 ORTHO05D009214 1.7e-58 229.9 156 75.0
TAR623G0904 Trochodendron aralioides HOM05D007282 ORTHO05D009214 3.7e-58 228.8 179 68.2
CiPaw.09G016500 Carya illinoinensis HOM05D007282 ORTHO05D009214 8.3e-58 227.6 194 67.0
Duzib093G1732 Durio zibethinus HOM05D007282 ORTHO05D009214 1.1e-57 227.3 175 66.9
Prupe.7G102300 Prunus persica HOM05D007282 ORTHO05D009214 2.4e-57 226.1 183 66.1
Hma1.2p1_0769F.1_g215750 Hydrangea macrophylla HOM05D007282 ORTHO05D009214 3.2e-57 225.7 200 62.5
PGR142G4217 Punica granatum HOM05D007282 ORTHO05D009214 9.2e-57 224.2 157 72.0
Atru.chr8.1455 Acer truncatum HOM05D007282 ORTHO05D009214 1.2e-56 223.8 180 67.8
Potri.006G210000 Populus trichocarpa HOM05D007282 ORTHO05D009214 2.7e-56 222.6 178 66.3
QL07p038317 Quercus lobata HOM05D007282 ORTHO05D009214 3.5e-56 222.2 139 79.9
Manes.08G027500 Manihot esculenta HOM05D000972 ORTHO05D007713 4.6e-56 221.9 145 75.2
Oeu025665.1 Olea europaea HOM05D007282 ORTHO05D009214 4.6e-56 221.9 200 62.5
Sabra06G0161800 Salix brachista HOM05D007282 ORTHO05D009214 7.8e-56 221.1 179 66.5
vmacro07443 Vaccinium macrocarpon HOM05D007282 ORTHO05D009214 7.8e-56 221.1 191 63.4
CANSAT64G2352 Cannabis sativa HOM05D007282 ORTHO05D009214 2.3e-55 219.5 187 63.1
Peaxi162Scf00069g00612 Petunia axillaris HOM05D007282 ORTHO05D009214 3.0e-55 219.2 199 58.8
Glyma.02G201500 Glycine max HOM05D007282 ORTHO05D009214 5.1e-55 218.4 177 66.1
Lj2A142T14 Lonicera japonica HOM05D007282 ORTHO05D009214 5.1e-55 218.4 148 73.0
TWI53G0193 Tripterygium wilfordii HOM05D007282 ORTHO05D009214 6.6e-55 218.0 140 78.6
Haze_19645 Corylus avellana HOM05D007282 ORTHO05D009214 2.5e-54 216.1 204 60.8
CSS0014712 Camellia sinensis var. sinensis HOM05D007282 ORTHO05D009214 1.6e-53 213.4 173 68.2
CSS0036453 Camellia sinensis var. sinensis HOM05D007282 ORTHO05D009214 1.6e-53 213.4 173 68.2
Eucgr.K02566 Eucalyptus grandis HOM05D007282 ORTHO05D009214 1.6e-53 213.4 146 74.0
MSTRG.19274 Avicennia marina HOM05D007282 ORTHO05D009214 6.2e-53 211.5 188 61.7
SalBow3G4659 Salvia bowleyana HOM05D007282 ORTHO05D009214 6.2e-53 211.5 174 64.4
Solyc09g010120.2 Solanum lycopersicum HOM05D007282 ORTHO05D009214 1.8e-52 209.9 199 58.8
Cpa.g.sc104.101 Carica papaya HOM05D007282 ORTHO05D009214 4.0e-52 208.8 173 64.7
Glyma.10G075000 Glycine max HOM05D007282 ORTHO05D009214 4.0e-52 208.8 179 63.7
Sopen09g004860 Solanum pennellii HOM05D007282 ORTHO05D009214 5.2e-52 208.4 199 58.3
Lj5g0026678 Lotus japonicus HOM05D007282 ORTHO05D009214 1.2e-51 207.2 142 73.9
Migut.J01006 Erythranthe guttata HOM05D007282 ORTHO05D009214 3.4e-51 205.7 143 71.3
SGA_v2.0_scaffold31G12895 Striga asiatica HOM05D007282 ORTHO05D009214 4.4e-51 205.3 142 71.8
RcHm_v2.0_Chr3g0474621 Rosa chinensis HOM05D007282 ORTHO05D009214 5.8e-51 204.9 175 62.3
PGSC0003DMG400008863 Solanum tuberosum HOM05D007282 ORTHO05D009214 7.6e-51 204.5 200 57.5
FAN02G3890 Fragaria x ananassa HOM05D007282 ORTHO05D009214 2.9e-50 202.6 176 60.8
Rhsim03G0070300 Rhododendron simsii HOM05D007282 ORTHO05D009214 4.9e-50 201.8 185 64.3
ECA248G2482 Erigeron canadensis HOM05D005132 ORTHO05D005823 8.3e-50 201.1 141 69.5
FvH4_6g19360 Fragaria vesca HOM05D007282 ORTHO05D009214 1.9e-49 199.9 189 57.1
Lalb_Chr06g0172471 Lupinus albus HOM05D007282 ORTHO05D009214 7.1e-49 198.0 122 79.5
Sc02g0000410 Simmondsia chinensis HOM05D007282 ORTHO05D009214 1.2e-48 197.2 142 72.5
ATR0820G206 Amborella trichopoda HOM05D007282 ORTHO05D009214 1.6e-48 196.8 147 68.7
Lsat_1_v5_gn_5_165601 Lactuca sativa HOM05D007282 ORTHO05D009214 1.6e-48 196.8 162 62.3
Cc00_g15490 Coffea canephora HOM05D007282 ORTHO05D009214 2.1e-48 196.4 114 84.2
GSVIVG01033882001 Vitis vinifera HOM05D007282 ORTHO05D009214 3.5e-48 195.7 114 85.1
Aqoxy4G02730 Aquilegia oxysepala HOM05D007282 ORTHO05D009214 4.6e-48 195.3 146 69.9
Ca_30898_v3 Cicer arietinum L. HOM05D007282 ORTHO05D009214 4.6e-48 195.3 179 60.9
HanXRQChr13g0390101 Helianthus annuus HOM05D007282 ORTHO05D009214 2.3e-47 193.0 152 63.8
Os01g0862200 Oryza sativa ssp. japonica HOM05D007282 ORTHO05D009214 3.0e-47 192.6 139 66.2
Zm00001eb366810 Zea mays HOM05D007282 ORTHO05D009214 3.0e-47 192.6 150 63.3
HPP92_001104 Vanilla planifolia HOM05D007282 ORTHO05D009214 6.6e-47 191.4 199 55.3
Phvul.007G163900 Phaseolus vulgaris HOM05D007282 ORTHO05D009214 5.6e-46 188.3 146 64.4
A04p27670 Brassica napus HOM05D000972 ORTHO05D009214 9.6e-46 187.6 124 75.0
BraA04t18262Z Brassica rapa HOM05D000972 ORTHO05D001783 9.6e-46 187.6 124 75.0
Thhalv10017280m.g Eutrema salsugineum HOM05D007282 ORTHO05D009214 1.6e-45 186.8 125 73.6
PSO384G4616 Papaver somniferum HOM05D007282 ORTHO05D009214 2.1e-45 186.4 147 66.7
CARHR130380 Cardamine hirsuta HOM05D007282 ORTHO05D009214 6.2e-45 184.9 184 56.0
Psat6g084240 Pisum sativum HOM05D007282 ORTHO05D009214 8.1e-45 184.5 177 57.1
AT2G36145 Arabidopsis thaliana HOM05D007282 ORTHO05D009214 1.4e-44 183.7 145 65.5
BcaC02g07630 Brassica carinata HOM05D007282 ORTHO05D009214 1.4e-44 183.7 132 70.5
BolC4t27996H Brassica oleracea HOM05D007282 ORTHO05D009214 1.4e-44 183.7 203 52.2
COL.COLO4_03547 Corchorus olitorius HOM05D007282 ORTHO05D009214 1.4e-44 183.7 168 58.9
TPR.G14774 Trifolium pratense HOM05D007282 ORTHO05D009214 1.4e-44 183.7 177 56.5
Sp4g18380 Schrenkiella parvula HOM05D007282 ORTHO05D009214 2.4e-44 183.0 181 55.2
AL4G32230 Arabidopsis lyrata HOM05D007282 ORTHO05D009214 6.8e-44 181.4 122 74.6
DCAR_013409 Daucus carota HOM05D007282 ORTHO05D009214 6.8e-44 181.4 187 55.6
BcaB06g28919 Brassica carinata HOM05D000972 ORTHO05D001783 8.9e-44 181.0 124 71.0
PSO339G4969 Papaver somniferum HOM05D007282 ORTHO05D009214 8.9e-44 181.0 179 57.5
THA.LOC104799754 Tarenaya hassleriana HOM05D007282 ORTHO05D009214 1.5e-43 180.3 124 74.2
Aa31LG5G21280 Aethionema arabicum HOM05D007282 ORTHO05D009214 2.6e-43 179.5 123 69.9
CDE08G0791 Ceratophyllum demersum HOM05D007282 ORTHO05D009214 7.6e-43 177.9 145 64.8
Medtr1g059660 Medicago truncatula HOM05D007282 ORTHO05D009214 3.8e-42 175.6 177 54.8
AUR62036998 Chenopodium quinoa HOM05D007282 ORTHO05D009214 4.9e-42 175.3 199 51.3
Carub.0004s1791 Capsella rubella HOM05D007282 ORTHO05D009214 6.4e-42 174.9 142 65.5
Hma1.2p1_0769F.1_g215760 Hydrangea macrophylla HOM05D007282 ORTHO05D009214 1.6e-40 170.2 139 67.6
Nitab4.5_0001875g0020 Nicotiana tabacum HOM05D007282 ORTHO05D009214 1.6e-40 170.2 199 52.8
CDE08G0228 Ceratophyllum demersum HOM05D007282 ORTHO05D009214 1.0e-39 167.5 121 70.2
CDE02G2307 Ceratophyllum demersum HOM05D007282 ORTHO05D009214 3.9e-39 165.6 157 58.6
Hund03936 Selenicereus undatus HOM05D007282 ORTHO05D009214 1.1e-38 164.1 155 58.7
C04p65190 Brassica napus HOM05D007282 ORTHO05D009214 3.3e-38 162.5 126 68.3
AUR62006220 Chenopodium quinoa HOM05D007282 ORTHO05D009214 3.3e-38 162.5 199 49.2
arahy.Tifrunner.gnm1.ann1.LMCN1R Arachis hypogaea HOM05D007282 ORTHO05D009214 8.1e-37 157.9 178 52.2
arahy.Tifrunner.gnm1.ann1.TUP4W7 Arachis hypogaea HOM05D007282 ORTHO05D009214 8.1e-37 157.9 178 52.2
EL10Ac7g16881 Beta vulgaris HOM05D007282 ORTHO05D009214 7.1e-33 144.8 204 48.0
Pp3c14_14160 Physcomitrium patens HOM05D007282 ORTHO05D009214 4.6e-32 142.1 119 58.0
AagrBONN_evm.TU.Sc2ySwM_344.5307 Anthoceros agrestis HOM05D007282 ORTHO05D009214 6.6e-31 138.3 123 56.1
Mapoly0153s0036 Marchantia polymorpha HOM05D007282 ORTHO05D009214 1.6e-29 133.7 118 58.5
SMO353G0249 Selaginella moellendorffii HOM05D007282 ORTHO05D009214 2.1e-29 133.3 124 54.0
MD14G1029600 Malus domestica HOM05D007282 ORTHO05D009214 1.9e-25 120.2 82 68.3
Ca_22305_v3 Cicer arietinum L. HOM05D007282 ORTHO05D009214 2.4e-25 119.8 86 70.9
MD12G1029300 Malus domestica HOM05D007282 ORTHO05D009214 3.5e-24 115.9 82 65.9
Aqoxy1G00013 Aquilegia oxysepala HOM05D007282 ORTHO05D009214 6.7e-23 111.7 84 67.9
Aqoxy2G01255 Aquilegia oxysepala HOM05D007282 ORTHO05D009214 1.9e-22 110.2 84 66.7
DCAR_031561 Daucus carota HOM05D007282 ORTHO05D009214 1.2e-19 100.9 80 62.5
Actinidia05405 Actinidia chinensis HOM05D005132 ORTHO05D005823 2.6e-11 73.2 53 69.8
TAR369G0436 Trochodendron aralioides HOM05D007282 ORTHO05D009214 3.4e-11 72.8 52 71.2
MD14G1029800 Malus domestica HOM05D007282 ORTHO05D009214 1.9e-09 67.0 104 45.2
Ciclev10013843m.g Citrus clementina HOM05D007282 ORTHO05D009214 2.3e-07 60.1 78 50.0
MD12G1029500 Malus domestica HOM05D007282 ORTHO05D009214 5.1e-07 58.9 50 58.0


User provided reference genes

Program Settings