Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024510.2 Cucumis melo HOM05D001312 ORTHO05D008018 2.1e-244 848.6 427 100.0
CsaV3_6G040350 Cucumis sativus L. HOM05D001312 ORTHO05D008018 3.5e-207 724.9 389 93.8
ClCG04G009690 Citrullus lanatus HOM05D001312 ORTHO05D008018 5.4e-200 701.0 392 90.6
Sed0012062 Sechium edule HOM05D001312 ORTHO05D008018 6.2e-196 687.6 389 88.2
RcHm_v2.0_Chr3g0471781 Rosa chinensis HOM05D001312 ORTHO05D008018 4.8e-156 555.1 387 69.0
FvH4_6g17520 Fragaria vesca HOM05D001312 ORTHO05D008018 3.1e-155 552.4 387 69.0
vmacro07336 Vaccinium macrocarpon HOM05D001312 ORTHO05D008018 9.1e-155 550.8 389 69.4
TAR633G1314 Trochodendron aralioides HOM05D001312 ORTHO05D001832 2.0e-154 549.7 389 69.7
MD14G1093900 Malus domestica HOM05D001312 ORTHO05D008018 2.6e-154 549.3 389 68.4
GSVIVG01033751001 Vitis vinifera HOM05D001312 ORTHO05D008018 3.4e-154 548.9 385 68.3
CANSAT80G2114 Cannabis sativa HOM05D001312 ORTHO05D008018 1.0e-153 547.4 387 69.3
CSS0027895 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 3.8e-153 545.4 389 69.2
CSS0009438 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 3.2e-152 542.3 389 68.9
Rhsim03G0083100 Rhododendron simsii HOM05D001312 ORTHO05D008018 3.2e-152 542.3 389 67.6
FAN05G0775 Fragaria x ananassa HOM05D001312 ORTHO05D008018 5.5e-152 541.6 396 66.9
FAN05G3053 Fragaria x ananassa HOM05D001312 ORTHO05D008018 5.5e-152 541.6 396 66.9
Thecc.05G079000 Theobroma cacao HOM05D001312 ORTHO05D008018 1.8e-150 536.6 389 66.8
FAN14G3191 Fragaria x ananassa HOM05D001312 ORTHO05D008018 2.3e-150 536.2 413 64.4
TWI53G1380 Tripterygium wilfordii HOM05D001312 ORTHO05D008018 2.3e-150 536.2 387 66.9
Dinv35859 Davidia involucrata HOM05D001312 ORTHO05D008018 6.7e-150 534.6 362 70.7
Potri.016G095900 Populus trichocarpa HOM05D001312 ORTHO05D008018 1.5e-149 533.5 386 66.8
Gorai.009G409200 Gossypium raimondii HOM05D001312 ORTHO05D008018 1.3e-148 530.4 386 67.9
CiPaw.10G004200 Carya illinoinensis HOM05D001312 ORTHO05D008018 1.7e-148 530.0 390 67.4
Gohir.D04G105500 Gossypium hirsutum HOM05D001312 ORTHO05D008018 2.2e-148 529.6 386 67.6
Actinidia39872 Actinidia chinensis HOM05D001312 ORTHO05D008018 8.2e-148 527.7 392 66.3
arahy.Tifrunner.gnm1.ann1.42C0B0 Arachis hypogaea HOM05D001312 ORTHO05D008018 1.2e-146 523.9 385 65.7
arahy.Tifrunner.gnm1.ann1.C1UQYX Arachis hypogaea HOM05D001312 ORTHO05D008018 1.2e-146 523.9 385 65.7
FAN09G2766 Fragaria x ananassa HOM05D001312 ORTHO05D008018 3.5e-146 522.3 413 63.2
PGSC0003DMG400028176 Solanum tuberosum HOM05D001312 ORTHO05D008018 5.9e-146 521.5 387 65.4
Aqoxy1G00967 Aquilegia oxysepala HOM05D001312 ORTHO05D008018 6.5e-145 518.1 389 67.6
Gohir.A04G066728 Gossypium hirsutum HOM05D001312 ORTHO05D008018 6.5e-145 518.1 382 67.0
Cpa.g.sc5.99 Carica papaya HOM05D001312 ORTHO05D008018 8.5e-145 517.7 385 66.2
COL.COLO4_22294 Corchorus olitorius HOM05D001312 ORTHO05D008018 1.1e-144 517.3 392 65.3
Lj3A1005G38 Lonicera japonica HOM05D001312 ORTHO05D008018 1.1e-144 517.3 411 63.3
Sc02g0001220 Simmondsia chinensis HOM05D001312 ORTHO05D008018 2.5e-144 516.2 399 60.9
Cc06_g05050 Coffea canephora HOM05D001312 ORTHO05D008018 7.2e-144 514.6 387 64.9
HanXRQChr01g0028401 Helianthus annuus HOM05D001312 ORTHO05D008018 7.2e-144 514.6 386 63.7
Manes.08G018900 Manihot esculenta HOM05D001312 ORTHO05D008018 1.6e-143 513.5 384 65.1
Lj5g0006635 Lotus japonicus HOM05D001312 ORTHO05D008018 8.0e-143 511.1 387 65.4
VMungo0720G0477 Vigna mungo HOM05D001312 ORTHO05D008018 8.0e-143 511.1 385 65.5
PSO339G3022 Papaver somniferum HOM05D001312 ORTHO05D008018 1.4e-142 510.4 377 65.8
Phvul.007G224100 Phaseolus vulgaris HOM05D001312 ORTHO05D008018 2.3e-142 509.6 385 65.2
QL07p040881 Quercus lobata HOM05D001312 ORTHO05D008018 2.3e-142 509.6 464 57.8
TPR.G5684 Trifolium pratense HOM05D001312 ORTHO05D008018 4.0e-142 508.8 382 64.4
PSO063G2793 Papaver somniferum HOM05D001312 ORTHO05D008018 5.2e-142 508.4 418 60.5
MSTRG.5801 Avicennia marina HOM05D001312 ORTHO05D008018 1.5e-141 506.9 386 64.5
FAN02G1263 Fragaria x ananassa HOM05D001312 ORTHO05D008018 1.5e-141 506.9 387 64.6
Nitab4.5_0004490g0050 Nicotiana tabacum HOM05D001312 ORTHO05D008018 4.4e-141 505.4 416 61.1
Nn6g35083 Nelumbo nucifera HOM05D001312 ORTHO05D008018 7.5e-141 504.6 387 68.2
Migut.J00495 Erythranthe guttata HOM05D001312 ORTHO05D008018 3.7e-140 502.3 387 63.8
Glyma.10G065300 Glycine max HOM05D001312 ORTHO05D008018 6.3e-140 501.5 385 63.9
Lsat_1_v5_gn_1_50640 Lactuca sativa HOM05D001312 ORTHO05D008018 6.3e-140 501.5 387 63.0
AT5G03770 Arabidopsis thaliana HOM05D001312 ORTHO05D008018 1.6e-138 496.9 385 63.1
Eucgr.A01566 Eucalyptus grandis HOM05D001312 ORTHO05D008018 1.6e-138 496.9 380 64.2
Thhalv10013569m.g Eutrema salsugineum HOM05D001312 ORTHO05D008018 2.0e-138 496.5 385 63.4
ECA248G1880 Erigeron canadensis HOM05D001312 ORTHO05D008018 1.3e-137 493.8 381 62.5
Carub.0006s0268 Capsella rubella HOM05D001312 ORTHO05D008018 3.8e-137 492.3 383 62.9
BcaC06g32083 Brassica carinata HOM05D001312 ORTHO05D008018 6.5e-137 491.5 385 61.6
A10p32330 Brassica napus HOM05D001312 ORTHO05D008018 1.1e-136 490.7 384 62.0
BraA10t45274Z Brassica rapa HOM05D001312 ORTHO05D008018 1.1e-136 490.7 384 62.0
Medtr1g061560 Medicago truncatula HOM05D001312 ORTHO05D008018 1.5e-136 490.3 384 62.5
SalBow3G2703 Salvia bowleyana HOM05D001312 ORTHO05D008018 3.2e-136 489.2 417 59.2
Sp6g38960 Schrenkiella parvula HOM05D001312 ORTHO05D008018 9.4e-136 487.6 385 61.8
Solyc10g083710.2 Solanum lycopersicum HOM05D001312 ORTHO05D008018 2.1e-135 486.5 387 62.5
C09p73160 Brassica napus HOM05D001312 ORTHO05D008018 2.7e-135 486.1 386 62.2
BolC9t60051H Brassica oleracea HOM05D001312 ORTHO05D008018 2.7e-135 486.1 386 62.2
THA.LOC104816378 Tarenaya hassleriana HOM05D001312 ORTHO05D008018 1.0e-134 484.2 382 63.1
Atru.BG.216.p Acer truncatum HOM05D001312 ORTHO05D008018 5.2e-134 481.9 391 63.4
AL6G13310 Arabidopsis lyrata HOM05D001312 ORTHO05D008018 8.8e-134 481.1 407 59.2
Sabra16G0101200 Salix brachista HOM05D001312 ORTHO05D008018 2.2e-132 476.5 500 50.6
SGA_v2.0_scaffold40G15429 Striga asiatica HOM05D001312 ORTHO05D008018 3.1e-131 472.6 399 59.6
EL10Ac7g16768 Beta vulgaris HOM05D001312 ORTHO05D008018 4.1e-131 472.2 387 58.7
ATR0820G168 Amborella trichopoda HOM05D001312 ORTHO05D008018 1.5e-128 463.8 388 58.8
Oeu039841.2 Olea europaea HOM05D001312 ORTHO05D008018 4.0e-126 455.7 514 49.6
Zm00001eb147410 Zea mays HOM05D001312 ORTHO05D008018 4.0e-126 455.7 388 58.0
Haze_19515 Corylus avellana HOM05D001312 ORTHO05D008018 4.4e-125 452.2 390 59.2
Nitab4.5_0000132g0320 Nicotiana tabacum HOM05D001312 ORTHO05D008018 1.1e-123 447.6 416 55.5
Atru.chr8.1664 Acer truncatum HOM05D001312 ORTHO05D008018 3.1e-123 446.0 321 67.3
Ca_11617_v3 Cicer arietinum L. HOM05D001312 ORTHO05D008018 7.0e-123 444.9 384 59.6
SEGI_32755 Sequoiadendron giganteum HOM05D001312 ORTHO05D008018 9.2e-123 444.5 387 58.7
CiPaw.09G007400 Carya illinoinensis HOM05D001312 ORTHO05D008018 3.8e-121 439.1 317 68.8
Ah.15g091190 Amaranthus hybridus HOM05D001312 ORTHO05D008018 1.5e-117 427.2 397 55.9
unitig_744.g24689 Utricularia gibba HOM05D001312 ORTHO05D008018 3.5e-114 416.0 389 55.3
Peaxi162Scf00110g01214 Petunia axillaris HOM05D001312 ORTHO05D008018 2.8e-111 406.4 406 54.9
MBI01_g23067_MAGBIO Magnolia biondii HOM05D001312 ORTHO05D008018 1.5e-109 400.6 287 66.9
Hma1.2p1_0651F.1_g195720 Hydrangea macrophylla HOM05D001312 ORTHO05D008018 9.5e-104 381.3 288 66.0
Aa31LG1G21490 Aethionema arabicum HOM05D001312 ORTHO05D008018 3.6e-103 379.4 356 55.6
Pp3c21_8090 Physcomitrium patens HOM05D001312 ORTHO05D008018 2.2e-100 370.2 377 50.1
Prupe.7G120300 Prunus persica HOM05D001312 ORTHO05D008018 3.7e-100 369.4 268 65.7
CARHR209530 Cardamine hirsuta HOM05D001312 ORTHO05D008018 1.9e-99 367.1 285 61.8
SMO364G0357 Selaginella moellendorffii HOM05D001312 ORTHO05D008018 1.9e-99 367.1 376 51.9
Ciclev10032390m.g Citrus clementina HOM05D001312 ORTHO05D008018 8.6e-97 358.2 251 68.1
AagrBONN_evm.TU.Sc2ySwM_344.3661 Anthoceros agrestis HOM05D001312 ORTHO05D008018 3.6e-95 352.8 384 48.2
Mapoly0002s0209 Marchantia polymorpha HOM05D001312 ORTHO05D008018 1.7e-92 344.0 377 46.9
CBR_g874 Chara braunii HOM05D001312 ORTHO05D008018 5.4e-91 339.0 359 50.7
Psat6g076240 Pisum sativum HOM05D001312 ORTHO05D008018 1.3e-87 327.8 253 64.4
DCAR_015029 Daucus carota HOM05D001312 ORTHO05D008018 5.3e-86 322.4 285 57.2
Hund20444 Selenicereus undatus HOM05D001312 ORTHO05D008018 1.2e-74 284.6 234 60.3
Os01g0857300 Oryza sativa ssp. japonica HOM05D001312 ORTHO05D008018 3.4e-61 240.0 194 61.9
Lalb_Chr21g0315431 Lupinus albus HOM05D001312 ORTHO05D008018 3.3e-48 196.8 154 63.6
Sopen10g033180 Solanum pennellii HOM05D001312 ORTHO05D008018 3.8e-44 183.3 128 65.6
AUR62037894 Chenopodium quinoa HOM05D001312 ORTHO05D008018 1.9e-43 181.0 232 44.8
HPP92_006792 Vanilla planifolia HOM05D001312 ORTHO05D008018 1.9e-43 181.0 211 46.4
arahy.Tifrunner.gnm1.ann1.IWGZ26 Arachis hypogaea HOM05D001312 ORTHO05D008018 3.0e-41 173.7 156 59.0
AUR62033601 Chenopodium quinoa HOM05D001312 ORTHO05D008018 1.3e-36 158.3 268 36.6
Glyma.13G150200 Glycine max HOM05D001312 ORTHO05D008018 1.3e-36 158.3 150 54.7
HPP92_006796 Vanilla planifolia HOM05D001312 ORTHO05D008018 3.8e-36 156.8 288 35.1
Lalb_Chr21g0315441 Lupinus albus HOM05D001312 ORTHO05D008018 1.0e-33 148.7 93 74.2
DCAR_015030 Daucus carota HOM05D001312 ORTHO05D008018 2.8e-31 140.6 92 70.7
CARHR208850 Cardamine hirsuta HOM05D001312 ORTHO05D008018 8.2e-31 139.0 115 60.9
MBI01_g48091_MAGBIO Magnolia biondii HOM05D001312 ORTHO05D008018 1.1e-30 138.7 97 71.1
Lalb_Chr21g0315421 Lupinus albus HOM05D001312 ORTHO05D008018 4.1e-30 136.7 102 64.7
CARHR208860 Cardamine hirsuta HOM05D001312 ORTHO05D008018 1.2e-29 135.2 98 68.4
Zm00001eb059120 Zea mays HOM05D000212 ORTHO05D008018 7.7e-29 132.5 96 58.3
Cre13.g583100 Chlamydomonas reinhardtii HOM05D001312 ORTHO05D008018 5.0e-28 129.8 384 28.1
Ciclev10013092m.g Citrus clementina HOM05D001312 ORTHO05D008018 1.6e-26 124.8 78 75.6
arahy.Tifrunner.gnm1.ann1.UHL2QJ Arachis hypogaea HOM05D000705 ORTHO05D008018 6.8e-17 92.8 156 34.6
Zm00001eb009840 Zea mays HOM05D001312 ORTHO05D008018 6.6e-12 76.3 64 51.6
Zm00001eb059130 Zea mays HOM05D000212 ORTHO05D002824 6.6e-12 76.3 55 60.0
VMungo0251G1834 Vigna mungo HOM05D001312 ORTHO05D008018 4.7e-10 70.1 46 67.4


User provided reference genes

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