Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024474.2 Cucumis melo HOM05D006449 ORTHO05D007995 8.5e-47 189.9 89 100.0
CsaV3_6G039970 Cucumis sativus L. HOM05D006449 ORTHO05D007995 2.1e-45 185.3 89 97.8
ClCG04G009390 Citrullus lanatus HOM05D006449 ORTHO05D007995 8.8e-44 179.9 89 94.4
Sed0015731 Sechium edule HOM05D006449 ORTHO05D007995 6.3e-42 173.7 89 88.8
Glyma.10G055200 Glycine max HOM05D006449 ORTHO05D007995 5.9e-40 167.2 89 83.1
Lalb_Chr02g0155801 Lupinus albus HOM05D006449 ORTHO05D007995 5.9e-40 167.2 89 84.3
Manes.09G065800 Manihot esculenta HOM05D006449 ORTHO05D007995 5.9e-40 167.2 88 84.1
TWI77G0881 Tripterygium wilfordii HOM05D006449 ORTHO05D007995 5.9e-40 167.2 89 84.3
CAN.G900.29 Capsicum annuum HOM05D006449 ORTHO05D007995 1.3e-39 166.0 87 85.1
TWI74G0214 Tripterygium wilfordii HOM05D006449 ORTHO05D007995 1.3e-39 166.0 89 83.1
Peaxi162Scf00311g00119 Petunia axillaris HOM05D006449 ORTHO05D007995 2.2e-39 165.2 87 85.1
Solyc09g008230.3 Solanum lycopersicum HOM05D006449 ORTHO05D007995 2.2e-39 165.2 87 83.9
Sopen09g003050 Solanum pennellii HOM05D006449 ORTHO05D007995 2.2e-39 165.2 87 83.9
Nitab4.5_0000814g0040 Nicotiana tabacum HOM05D006449 ORTHO05D007995 2.9e-39 164.9 87 85.1
Psat6g074040 Pisum sativum HOM05D006449 ORTHO05D007995 2.9e-39 164.9 89 84.3
Nn2g13802 Nelumbo nucifera HOM05D006449 ORTHO05D007995 3.8e-39 164.5 89 83.1
AUR62040339 Chenopodium quinoa HOM05D006449 ORTHO05D007995 5.0e-39 164.1 89 80.9
PGSC0003DMG400003863 Solanum tuberosum HOM05D006449 ORTHO05D007995 5.0e-39 164.1 87 82.8
EL10Ac7g16636 Beta vulgaris HOM05D006449 ORTHO05D007995 6.5e-39 163.7 89 83.1
CiPaw.10G129500 Carya illinoinensis HOM05D006449 ORTHO05D007995 6.5e-39 163.7 87 85.1
AUR62042508 Chenopodium quinoa HOM05D006449 ORTHO05D007995 8.5e-39 163.3 89 80.9
HanXRQChr01g0027751 Helianthus annuus HOM05D006449 ORTHO05D007995 8.5e-39 163.3 88 81.8
CSS0028691 Camellia sinensis var. sinensis HOM05D006449 ORTHO05D007995 1.1e-38 162.9 88 84.1
PGR004G0793 Punica granatum HOM05D006449 ORTHO05D007995 1.1e-38 162.9 88 86.4
SGA_v2.0_scaffold40G15520 Striga asiatica HOM05D006449 ORTHO05D007995 1.1e-38 162.9 88 85.2
HanXRQChr15g0491571 Helianthus annuus HOM05D006449 ORTHO05D007995 1.4e-38 162.5 88 81.8
Nitab4.5_0003861g0010 Nicotiana tabacum HOM05D006449 ORTHO05D007995 1.4e-38 162.5 87 82.8
Glyma.13G142300 Glycine max HOM05D006449 ORTHO05D007995 1.9e-38 162.2 89 80.9
QL07p043219 Quercus lobata HOM05D006449 ORTHO05D007995 1.9e-38 162.2 88 80.7
Nn6g35286 Nelumbo nucifera HOM05D006449 ORTHO05D007995 3.2e-38 161.4 88 83.0
CANSAT80G0535 Cannabis sativa HOM05D006449 ORTHO05D007995 4.2e-38 161.0 89 84.3
Oeu041490.2 Olea europaea HOM05D006449 ORTHO05D007995 4.2e-38 161.0 88 85.2
TPR.G11267 Trifolium pratense HOM05D006449 ORTHO05D007995 4.2e-38 161.0 89 82.0
MSTRG.5764 Avicennia marina HOM05D006449 ORTHO05D007995 5.5e-38 160.6 88 83.0
Ca_11505_v3 Cicer arietinum L. HOM05D006449 ORTHO05D007995 5.5e-38 160.6 89 82.0
Lj5g0001377 Lotus japonicus HOM05D006449 ORTHO05D007995 9.4e-38 159.8 89 80.9
THA.LOC104823475 Tarenaya hassleriana HOM05D006449 ORTHO05D007995 9.4e-38 159.8 89 80.9
Actinidia08770 Actinidia chinensis HOM05D006449 ORTHO05D007995 1.2e-37 159.5 88 81.8
Gorai.002G246900 Gossypium raimondii HOM05D006449 ORTHO05D007995 1.2e-37 159.5 89 80.9
Phvul.007G219000 Phaseolus vulgaris HOM05D006449 ORTHO05D007995 1.2e-37 159.5 89 80.9
Gohir.A01G213500 Gossypium hirsutum HOM05D006449 ORTHO05D007995 1.6e-37 159.1 89 82.0
SGA_v2.0_scaffold75G24848 Striga asiatica HOM05D006449 ORTHO05D007995 1.6e-37 159.1 88 83.0
COL.COLO4_26955 Corchorus olitorius HOM05D006449 ORTHO05D007995 2.1e-37 158.7 88 83.0
ECA248G0052 Erigeron canadensis HOM05D006449 ORTHO05D007995 2.1e-37 158.7 88 83.0
Sabra06G0098200 Salix brachista HOM05D006449 ORTHO05D007995 2.7e-37 158.3 89 83.1
DCAR_015000 Daucus carota HOM05D006449 ORTHO05D007995 4.7e-37 157.5 90 81.1
VMungo0720G3134 Vigna mungo HOM05D006449 ORTHO05D007995 4.7e-37 157.5 89 80.9
Atru.chr8.1798 Acer truncatum HOM05D006449 ORTHO05D007995 6.1e-37 157.1 88 81.8
Rhsim03G0091200 Rhododendron simsii HOM05D006449 ORTHO05D007995 6.1e-37 157.1 88 81.8
Thecc.05G067500 Theobroma cacao HOM05D006449 ORTHO05D007995 6.1e-37 157.1 88 81.8
Duzib093G0849 Durio zibethinus HOM05D006449 ORTHO05D007995 8.0e-37 156.8 88 81.8
Hma1.2p1_0205F.1_g086990 Hydrangea macrophylla HOM05D006449 ORTHO05D007995 8.0e-37 156.8 88 79.5
A05p08950 Brassica napus HOM05D006449 ORTHO05D007995 1.0e-36 156.4 87 79.3
C04p11060 Brassica napus HOM05D006449 ORTHO05D007995 1.0e-36 156.4 87 79.3
BolC4t22754H Brassica oleracea HOM05D006449 ORTHO05D007995 1.0e-36 156.4 87 79.3
BraA05t19857Z Brassica rapa HOM05D006449 ORTHO05D007995 1.0e-36 156.4 87 79.3
Lsat_1_v5_gn_1_52340 Lactuca sativa HOM05D006449 ORTHO05D007995 1.0e-36 156.4 86 77.9
BcaB01g03807 Brassica carinata HOM05D006449 ORTHO05D007995 1.4e-36 156.0 87 78.2
GSVIVG01033644001 Vitis vinifera HOM05D006449 ORTHO05D007995 1.8e-36 155.6 87 80.5
BcaB02g09320 Brassica carinata HOM05D006449 ORTHO05D007995 2.3e-36 155.2 87 78.2
BcaC02g11815 Brassica carinata HOM05D006449 ORTHO05D007995 2.3e-36 155.2 87 78.2
Thhalv10017435m.g Eutrema salsugineum HOM05D006449 ORTHO05D007995 3.0e-36 154.8 86 77.9
Gohir.D01G202200 Gossypium hirsutum HOM05D006449 ORTHO05D007995 3.0e-36 154.8 89 79.8
Medtr1g063190 Medicago truncatula HOM05D006449 ORTHO05D007995 3.0e-36 154.8 89 77.5
Aqoxy1G01150 Aquilegia oxysepala HOM05D006449 ORTHO05D007995 5.2e-36 154.1 88 78.4
ATR0219G007 Amborella trichopoda HOM05D006449 ORTHO05D007995 8.8e-36 153.3 89 76.4
CSS0018897 Camellia sinensis var. sinensis HOM05D006449 ORTHO05D007995 8.8e-36 153.3 81 85.2
Peaxi162Scf00638g00414 Petunia axillaris HOM05D006449 ORTHO05D007995 8.8e-36 153.3 87 81.6
A03p20330 Brassica napus HOM05D006449 ORTHO05D007995 1.5e-35 152.5 87 75.9
BraA03t11279Z Brassica rapa HOM05D006449 ORTHO05D007995 1.5e-35 152.5 87 75.9
Cc06_g04250 Coffea canephora HOM05D006449 ORTHO05D007995 1.5e-35 152.5 76 89.5
BcaC01g05620 Brassica carinata HOM05D006449 ORTHO05D007995 3.3e-35 151.4 87 74.7
C03p23890 Brassica napus HOM05D006449 ORTHO05D007995 3.3e-35 151.4 87 74.7
BolC3t14781H Brassica oleracea HOM05D006449 ORTHO05D007995 3.3e-35 151.4 87 74.7
Sp4g19220 Schrenkiella parvula HOM05D006449 ORTHO05D007995 3.3e-35 151.4 87 75.9
Hund26578 Selenicereus undatus HOM05D006449 ORTHO05D007995 4.4e-35 151.0 88 76.1
Hund20380 Selenicereus undatus HOM05D006449 ORTHO05D007995 5.7e-35 150.6 88 76.1
CARHR131400 Cardamine hirsuta HOM05D006449 ORTHO05D007995 9.7e-35 149.8 89 73.0
Potri.016G093500 Populus trichocarpa HOM05D006449 ORTHO05D007995 9.7e-35 149.8 91 80.2
AL4G33170 Arabidopsis lyrata HOM05D006449 ORTHO05D007995 1.3e-34 149.4 87 73.6
AT2G36930 Arabidopsis thaliana HOM05D006449 ORTHO05D007995 1.7e-34 149.1 87 74.7
Sabra16G0098600 Salix brachista HOM05D006449 ORTHO05D007995 1.7e-34 149.1 91 78.0
FAN05G0981 Fragaria x ananassa HOM05D006449 ORTHO05D007995 3.7e-34 147.9 91 80.2
FAN14G2797 Fragaria x ananassa HOM05D006449 ORTHO05D007995 3.7e-34 147.9 91 80.2
FAN14G3008 Fragaria x ananassa HOM05D006449 ORTHO05D007995 3.7e-34 147.9 91 80.2
MD12G1112600 Malus domestica HOM05D006449 ORTHO05D007995 3.7e-34 147.9 89 76.4
SEGI_04945 Sequoiadendron giganteum HOM05D006449 ORTHO05D007995 4.8e-34 147.5 84 79.8
Carub.0004s1878 Capsella rubella HOM05D006449 ORTHO05D007995 8.2e-34 146.7 87 73.6
unitig_749.g14285 Utricularia gibba HOM05D006449 ORTHO05D007995 8.2e-34 146.7 81 79.0
FvH4_6g16440 Fragaria vesca HOM05D006449 ORTHO05D007995 1.4e-33 146.0 90 78.9
FAN02G2429 Fragaria x ananassa HOM05D006449 ORTHO05D007995 1.8e-33 145.6 91 79.1
CDE09G0874 Ceratophyllum demersum HOM05D006449 ORTHO05D007995 2.4e-33 145.2 89 75.3
RcHm_v2.0_Chr3g0470301 Rosa chinensis HOM05D006449 ORTHO05D007995 2.4e-33 145.2 91 78.0
MD00G1155400 Malus domestica HOM05D006449 ORTHO05D007995 4.1e-33 144.4 89 74.2
Potri.006G124100 Populus trichocarpa HOM05D006449 ORTHO05D007995 4.1e-33 144.4 74 89.2
Os08g0564500 Oryza sativa ssp. japonica HOM05D006449 ORTHO05D007995 1.2e-32 142.9 93 71.0
Zm00001eb038700 Zea mays HOM05D006449 ORTHO05D007995 1.6e-32 142.5 93 71.0
Aa31LG5G22150 Aethionema arabicum HOM05D006449 ORTHO05D007995 3.5e-32 141.4 85 75.3
HPP92_025806 Vanilla planifolia HOM05D006449 ORTHO05D007995 4.5e-32 141.0 91 72.5
Mapoly0185s0018 Marchantia polymorpha HOM05D006449 ORTHO05D007995 5.5e-30 134.0 74 77.0
Pp3c13_22060 Physcomitrium patens HOM05D006449 ORTHO05D007995 7.2e-30 133.7 85 68.2
Cfa017617 Carpinus fangiana HOM05D006449 ORTHO05D007995 2.1e-29 132.1 85 75.3
SMO144G0185 Selaginella moellendorffii HOM05D006449 ORTHO05D007995 1.8e-28 129.0 89 66.3
PSO063G3287 Papaver somniferum HOM05D006449 ORTHO05D007995 5.0e-23 110.9 85 61.2
PSO339G4301 Papaver somniferum HOM05D006449 ORTHO05D007995 5.0e-23 110.9 85 61.2
Haze_20546 Corylus avellana HOM05D006449 ORTHO05D007995 1.6e-21 105.9 55 83.6
Nitab4.5_0029554g0010 Nicotiana tabacum HOM05D006449 ORTHO05D007995 1.4e-20 102.8 54 81.5
Sc20g0005520 Simmondsia chinensis HOM05D006449 ORTHO05D007995 4.0e-20 101.3 55 78.2
arahy.Tifrunner.gnm1.ann1.9GBJ25 Arachis hypogaea HOM05D006449 ORTHO05D007995 8.8e-20 100.1 55 80.0
arahy.Tifrunner.gnm1.ann1.D9FX9P Arachis hypogaea HOM05D006449 ORTHO05D007995 8.8e-20 100.1 55 80.0
Migut.J00654 Erythranthe guttata HOM05D006449 ORTHO05D007995 2.6e-19 98.6 54 79.6
Ciclev10013228m.g Citrus clementina HOM05D006449 ORTHO05D007995 5.7e-19 97.4 54 77.8
Manes.08G011000 Manihot esculenta HOM05D006449 ORTHO05D007995 9.8e-19 96.7 65 70.8
Oeu005023.1 Olea europaea HOM05D006449 ORTHO05D007995 9.8e-19 96.7 54 77.8
vmacro07293 Vaccinium macrocarpon HOM05D006449 ORTHO05D007995 9.8e-19 96.7 54 77.8
TAR633G1413 Trochodendron aralioides HOM05D002509 ORTHO05D002758 1.7e-18 95.9 54 77.8
CBR_g8310 Chara braunii HOM05D006449 ORTHO05D007995 1.2e-13 79.7 51 62.7
Cre17.g734628 Chlamydomonas reinhardtii HOM05D006449 ORTHO05D007995 6.1e-13 77.4 71 47.9
MCO09G543 Micromonas commoda HOM05D006449 ORTHO05D007995 8.0e-13 77.0 73 49.3
PRCOL_00003735 Prasinoderma coloniale HOM05D006449 ORTHO05D007995 6.8e-12 73.9 68 45.6
HanXRQChr16g0526221 Helianthus annuus HOM05D006449 ORTHO05D007995 1.4e-09 66.2 30 90.0
MSTRG.19181 Avicennia marina HOM05D006449 ORTHO05D007995 7.0e-09 63.9 33 87.9
Lj3A986G82 Lonicera japonica HOM05D006449 ORTHO05D007995 1.2e-08 63.2 34 79.4
Thhalv10009663m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 2.0e-08 62.4 31 87.1
unitig_75.g29315 Utricularia gibba HOM05D006449 ORTHO05D007995 4.3e-06 54.7 25 92.0
Prupe.7G129700 Prunus persica HOM05D006449 ORTHO05D007995 7.3e-06 53.9 34 61.8


User provided reference genes

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