Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C024465.2 Cucumis melo HOM05D006702 ORTHO05D008540 1.0e-111 406.8 201 100.0
CsaV3_6G039890 Cucumis sativus L. HOM05D006702 ORTHO05D008540 8.5e-103 377.1 200 94.0
ClCG04G009300 Citrullus lanatus HOM05D006702 ORTHO05D008540 6.7e-100 367.5 203 90.1
Sed0024166 Sechium edule HOM05D006702 ORTHO05D008540 3.5e-64 248.8 199 66.3
QL07p043331 Quercus lobata HOM05D006702 ORTHO05D008540 2.2e-50 203.0 186 61.3
QL07p043496 Quercus lobata HOM05D006702 ORTHO05D008540 1.9e-49 199.9 186 60.8
Haze_20544 Corylus avellana HOM05D006702 ORTHO05D008540 1.2e-48 197.2 194 58.2
Haze_20547 Corylus avellana HOM05D006702 ORTHO05D008540 2.0e-48 196.4 187 60.4
CiPaw.10G130200 Carya illinoinensis HOM05D006702 ORTHO05D008540 3.5e-48 195.7 161 64.0
Prupe.6G232200 Prunus persica HOM05D006702 ORTHO05D008540 6.0e-48 194.9 212 54.2
Gorai.009G414600 Gossypium raimondii HOM05D006702 ORTHO05D008540 7.8e-48 194.5 191 59.2
CANSAT80G0135 Cannabis sativa HOM05D006702 ORTHO05D008540 1.0e-47 194.1 187 58.8
Gohir.A04G072000 Gossypium hirsutum HOM05D006702 ORTHO05D008540 1.7e-47 193.4 191 58.6
CiPaw.10G130000 Carya illinoinensis HOM05D006702 ORTHO05D008540 5.0e-47 191.8 151 65.6
TWI77G0937 Tripterygium wilfordii HOM05D006702 ORTHO05D008540 3.3e-46 189.1 197 54.8
FAN05G3937 Fragaria x ananassa HOM05D006702 ORTHO05D008540 2.8e-45 186.0 193 56.0
Potri.016G093000 Populus trichocarpa HOM05D006702 ORTHO05D008540 3.6e-45 185.7 216 50.9
Duzib106G0264 Durio zibethinus HOM05D006702 ORTHO05D008540 4.7e-45 185.3 173 60.7
FvH4_6g16390 Fragaria vesca HOM05D006702 ORTHO05D008540 6.2e-45 184.9 194 56.2
FAN14G1896 Fragaria x ananassa HOM05D006702 ORTHO05D008540 6.2e-45 184.9 194 56.2
RcHm_v2.0_Chr3g0470251 Rosa chinensis HOM05D006702 ORTHO05D008540 1.4e-44 183.7 183 59.6
THA.LOC104823233 Tarenaya hassleriana HOM05D006702 ORTHO05D008540 2.0e-43 179.9 168 60.7
Manes.09G067614 Manihot esculenta HOM05D006702 ORTHO05D008540 4.4e-43 178.7 186 55.9
Nitab4.5_0008928g0010 Nicotiana tabacum HOM05D006702 ORTHO05D008540 4.4e-43 178.7 142 66.9
CSS0007009 Camellia sinensis var. sinensis HOM05D006702 ORTHO05D008540 5.8e-43 178.3 139 67.6
Cc06_g04220 Coffea canephora HOM05D006702 ORTHO05D008540 7.5e-43 177.9 144 66.0
Nitab4.5_0000578g0200 Nicotiana tabacum HOM05D006702 ORTHO05D008540 1.3e-42 177.2 157 61.1
MD04G1093600 Malus domestica HOM05D006702 ORTHO05D008540 1.7e-42 176.8 193 54.4
Thecc.05G066700 Theobroma cacao HOM05D006702 ORTHO05D008540 3.7e-42 175.6 207 51.7
GSVIVG01025733001 Vitis vinifera HOM05D006702 ORTHO05D008540 1.4e-41 173.7 103 78.6
Gorai.006G163300 Gossypium raimondii HOM05D006702 ORTHO05D008540 5.4e-41 171.8 156 59.6
Gohir.D04G110501 Gossypium hirsutum HOM05D006702 ORTHO05D008540 7.0e-41 171.4 97 82.5
Gohir.D09G142300 Gossypium hirsutum HOM05D006702 ORTHO05D008540 9.2e-41 171.0 156 59.0
PGR142G4417 Punica granatum HOM05D006702 ORTHO05D008540 2.1e-40 169.9 144 63.2
Gohir.A09G146600 Gossypium hirsutum HOM05D006702 ORTHO05D008540 3.5e-40 169.1 141 63.1
CAN.G900.34 Capsicum annuum HOM05D006702 ORTHO05D008540 1.3e-39 167.2 142 61.3
Duzib128G1950 Durio zibethinus HOM05D006702 ORTHO05D008540 2.3e-39 166.4 90 86.7
Actinidia32493 Actinidia chinensis HOM05D006702 ORTHO05D008540 3.9e-39 165.6 142 63.4
MSTRG.10321 Avicennia marina HOM05D006702 ORTHO05D008540 5.1e-39 165.2 172 55.2
Lalb_Chr06g0171741 Lupinus albus HOM05D006702 ORTHO05D008540 8.6e-39 164.5 186 53.2
Cpa.g.sc54.80 Carica papaya HOM05D006702 ORTHO05D008540 1.5e-38 163.7 157 58.0
Migut.L01703 Erythranthe guttata HOM05D006702 ORTHO05D008540 1.5e-38 163.7 140 65.0
Lj5g0016847 Lotus japonicus HOM05D006702 ORTHO05D008540 1.5e-38 163.7 167 55.1
Eucgr.K02933 Eucalyptus grandis HOM05D006702 ORTHO05D008540 1.9e-38 163.3 212 50.0
Phvul.007G219250 Phaseolus vulgaris HOM05D006702 ORTHO05D008540 1.9e-38 163.3 122 68.0
Ciclev10012549m.g Citrus clementina HOM05D006702 ORTHO05D008540 5.6e-38 161.8 172 55.2
C03p01460 Brassica napus HOM05D006702 ORTHO05D008540 7.3e-38 161.4 143 62.2
SGA_v2.0_scaffold224G42945 Striga asiatica HOM05D006702 ORTHO05D008540 7.3e-38 161.4 183 54.1
Carub.0006s0219 Capsella rubella HOM05D006702 ORTHO05D008540 9.5e-38 161.0 146 62.3
Oeu045060.1 Olea europaea HOM05D006702 ORTHO05D008540 9.5e-38 161.0 143 62.9
BcaB01g05844 Brassica carinata HOM05D006702 ORTHO05D008540 1.2e-37 160.6 143 62.9
Atru.chr8.1809 Acer truncatum HOM05D006702 ORTHO05D008540 2.1e-37 159.8 146 61.6
ECA233G1636 Erigeron canadensis HOM05D006702 ORTHO05D008540 2.1e-37 159.8 110 71.8
TWI53G0904 Tripterygium wilfordii HOM05D006702 ORTHO05D008540 2.1e-37 159.8 103 71.8
BolC3t12702H Brassica oleracea HOM05D006702 ORTHO05D008540 3.6e-37 159.1 137 64.2
Nn2g13794 Nelumbo nucifera HOM05D006702 ORTHO05D008540 6.2e-37 158.3 162 57.4
Nn2g13797 Nelumbo nucifera HOM05D006702 ORTHO05D008540 6.2e-37 158.3 162 57.4
Sp6g39370 Schrenkiella parvula HOM05D006702 ORTHO05D008540 8.1e-37 157.9 144 60.4
Sc02g0001610 Simmondsia chinensis HOM05D006702 ORTHO05D008540 8.1e-37 157.9 126 63.5
PGSC0003DMG400003886 Solanum tuberosum HOM05D006702 ORTHO05D008540 1.1e-36 157.5 114 69.3
Sabra16G0098200 Salix brachista HOM05D006702 ORTHO05D008540 1.4e-36 157.1 91 82.4
VMungo0720G0934 Vigna mungo HOM05D006702 ORTHO05D008540 1.4e-36 157.1 93 78.5
Sopen09g002990 Solanum pennellii HOM05D006702 ORTHO05D008540 2.3e-36 156.4 162 57.4
AT5G03370 Arabidopsis thaliana HOM05D006702 ORTHO05D008540 5.2e-36 155.2 161 57.1
Aa31LG1G21770 Aethionema arabicum HOM05D006702 ORTHO05D008540 6.8e-36 154.8 140 59.3
BraA03t09496Z Brassica rapa HOM05D006702 ORTHO05D008540 8.9e-36 154.5 137 61.3
AL6G12700 Arabidopsis lyrata HOM05D006702 ORTHO05D008540 1.2e-35 154.1 136 60.3
A03p01140 Brassica napus HOM05D000070 ORTHO05D001255 1.2e-35 154.1 138 63.8
TAR369G0293 Trochodendron aralioides HOM05D006702 ORTHO05D008540 1.5e-35 153.7 89 83.1
TPR.G11275 Trifolium pratense HOM05D006702 ORTHO05D008540 2.6e-35 152.9 129 60.5
Medtr1g063240 Medicago truncatula HOM05D006702 ORTHO05D008540 3.4e-35 152.5 122 63.9
Solyc09g008190.3 Solanum lycopersicum HOM05D006702 ORTHO05D008540 3.4e-35 152.5 207 49.8
Aqoxy2G01772 Aquilegia oxysepala HOM05D006702 ORTHO05D008540 7.5e-35 151.4 82 85.4
Glyma.13G142500 Glycine max HOM05D006702 ORTHO05D008540 1.3e-34 150.6 101 75.2
Thhalv10003274m.g Eutrema salsugineum HOM05D006702 ORTHO05D008540 2.2e-34 149.8 115 67.8
CiPaw.09G172500 Carya illinoinensis HOM05D006702 ORTHO05D008540 8.3e-34 147.9 99 71.7
PSO339G3061 Papaver somniferum HOM05D006702 ORTHO05D008540 8.3e-34 147.9 147 55.8
Lj2P122T8 Lonicera japonica HOM05D006702 ORTHO05D008540 1.1e-33 147.5 89 79.8
ATR0171G014 Amborella trichopoda HOM05D006702 ORTHO05D008540 1.4e-33 147.1 87 78.2
EL10Ac7g16628 Beta vulgaris HOM05D006702 ORTHO05D008540 1.4e-33 147.1 92 73.9
Psat6g074160 Pisum sativum HOM05D006702 ORTHO05D008540 1.4e-33 147.1 134 59.7
CDE05G1201 Ceratophyllum demersum HOM05D006702 ORTHO05D008540 1.9e-33 146.7 96 75.0
CARHR209960 Cardamine hirsuta HOM05D006702 ORTHO05D008540 5.4e-33 145.2 157 55.4
Ca_11502_v3 Cicer arietinum L. HOM05D006702 ORTHO05D008540 9.2e-33 144.4 160 51.2
DCAR_020817 Daucus carota HOM05D006702 ORTHO05D008540 1.2e-32 144.1 91 73.6
AUR62040349 Chenopodium quinoa HOM05D006702 ORTHO05D008540 2.7e-32 142.9 89 75.3
Lsat_1_v5_gn_6_25081 Lactuca sativa HOM05D006702 ORTHO05D008540 4.6e-32 142.1 137 56.9
Thhalv10014711m.g Eutrema salsugineum HOM05D006702 ORTHO05D008540 6.0e-32 141.7 93 71.0
Thhalv10029095m.g Eutrema salsugineum HOM05D006702 ORTHO05D008540 7.8e-32 141.4 89 73.0
Lalb_Chr24g0398871 Lupinus albus HOM05D006702 ORTHO05D008540 3.0e-31 139.4 98 68.4
AUR62042500 Chenopodium quinoa HOM05D006702 ORTHO05D008540 5.1e-31 138.7 104 66.3
Hma1.2p1_0205F.1_g087030 Hydrangea macrophylla HOM05D006702 ORTHO05D008540 4.3e-30 135.6 133 57.9
Nitab4.5_0008928g0020 Nicotiana tabacum HOM05D006702 ORTHO05D008540 6.8e-28 128.3 85 71.8
CAN.G900.33 Capsicum annuum HOM05D006702 ORTHO05D008540 1.2e-27 127.5 85 71.8
DCAR_014995 Daucus carota HOM05D006702 ORTHO05D008540 1.2e-27 127.5 95 65.3
Peaxi162Scf01139g00005 Petunia axillaris HOM05D006702 ORTHO05D008540 1.2e-27 127.5 88 68.2
CARHR118060 Cardamine hirsuta HOM05D006702 ORTHO05D008540 1.5e-27 127.1 89 66.3
Hund25533 Selenicereus undatus HOM05D006702 ORTHO05D008540 4.4e-27 125.6 130 57.7
arahy.Tifrunner.gnm1.ann1.C2LQEN Arachis hypogaea HOM05D006702 ORTHO05D008540 2.2e-26 123.2 75 78.7
arahy.Tifrunner.gnm1.ann1.NQ6TBI Arachis hypogaea HOM05D006702 ORTHO05D008540 2.2e-26 123.2 75 78.7
Potri.006G124966 Populus trichocarpa HOM05D006702 ORTHO05D008540 3.8e-26 122.5 110 59.1
Zm00001eb380050 Zea mays HOM05D006702 ORTHO05D008540 3.2e-25 119.4 116 56.9
SEGI_37807 Sequoiadendron giganteum HOM05D006702 ORTHO05D008540 1.6e-24 117.1 89 62.9
unitig_0.g683 Utricularia gibba HOM05D006702 ORTHO05D008540 3.0e-23 112.8 109 59.6
AagrBONN_evm.TU.Sc2ySwM_368.2290 Anthoceros agrestis HOM05D006702 ORTHO05D008540 8.7e-23 111.3 92 60.9
Mapoly0013s0202 Marchantia polymorpha HOM05D006702 ORTHO05D008540 1.1e-22 110.9 92 55.4
Os06g0264700 Oryza sativa ssp. japonica HOM05D006702 ORTHO05D008540 5.6e-22 108.6 106 59.4
AagrBONN_evm.TU.Sc2ySwM_362.139 Anthoceros agrestis HOM05D006702 ORTHO05D008540 1.8e-20 103.6 89 53.9
SMO137G0384 Selaginella moellendorffii HOM05D006702 ORTHO05D008540 2.4e-20 103.2 87 55.2
Pp3c18_4750 Physcomitrium patens HOM05D006702 ORTHO05D008540 1.2e-19 100.9 89 55.1
Zm00001eb380040 Zea mays HOM05D006702 ORTHO05D008540 1.2e-19 100.9 111 55.0
Pp3c1_15300 Physcomitrium patens HOM05D006702 ORTHO05D008540 9.9e-19 97.8 97 46.4
FAN02G1423 Fragaria x ananassa HOM05D006702 ORTHO05D008540 2.1e-16 90.1 126 49.2
FAN05G1090 Fragaria x ananassa HOM05D006702 ORTHO05D008540 2.1e-16 90.1 126 49.2
MSTRG.19178 Avicennia marina HOM05D006702 ORTHO05D008540 3.6e-13 79.3 140 42.1
Pp3c5_16270 Physcomitrium patens HOM05D006702 ORTHO05D008540 4.8e-13 79.0 96 39.6
CDE05G1088 Ceratophyllum demersum HOM05D006702 ORTHO05D008540 2.6e-11 73.2 41 82.9
Sabra06G0098700 Salix brachista HOM05D000002 ORTHO05D000047 3.2e-09 66.2 55 63.6


User provided reference genes

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